Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:82546494-82956536

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Pas60 11 82551243 to 82551332 89 DNA segment DNA segment, Chr 11, Pasteur Institute 60
D11Pas28 11 82564333 to 82564494 161 DNA segment DNA segment, Chr 11, Pasteur Institute 28
D11Pas27 11 82571631 to 82571747 116 DNA segment DNA segment, Chr 11, Pasteur Institute 27
D11Pas62 11 82581215 to 82581299 84 DNA segment DNA segment, Chr 11, Pasteur Institute 62
D11Pas63 11 82586820 to 82586899 79 DNA segment DNA segment, Chr 11, Pasteur Institute 63
Gm24612 11 82596073 to 82596179 106 - snRNA gene predicted gene, 24612
Tssr109568 11 82607184 to 82607185 1 - TSS region transcription start site region 109568
D11Pas29 11 82623868 to 82623984 116 DNA segment DNA segment, Chr 11, Pasteur Institute 29
Gm11426 11 82633353 to 82636309 2956 + lincRNA gene predicted gene 11426
D11Mit354 11 82662727 to 82662827 100 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 354
D11Pas68 11 82666751 to 82666984 233 DNA segment DNA segment, Chr 11, Pasteur Institute 68
D11Pas67 11 82679233 to 82679387 154 DNA segment DNA segment, Chr 11, Pasteur Institute 67
D11Mit66 11 82694218 to 82694372 154 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 66
D11Pas66 11 82699105 to 82699317 212 DNA segment DNA segment, Chr 11, Pasteur Institute 66
D11Pas33 11 82715005 to 82715246 241 DNA segment DNA segment, Chr 11, Pasteur Institute 33
Tssr109569 11 82715447 to 82715449 2 - TSS region transcription start site region 109569
Cct6b 11 82719250 to 82764321 45071 - protein coding gene chaperonin containing Tcp1, subunit 6b (zeta)
Gm11421 11 82725143 to 82725436 293 + pseudogene predicted gene 11421
Gm11422 11 82728000 to 82729096 1096 + pseudogene predicted gene 11422
Gm11420 11 82745804 to 82746205 401 - pseudogene predicted gene 11420
Tssr109570 11 82751494 to 82751536 42 - TSS region transcription start site region 109570
D11Mit283 11 82757436 to 82757603 167 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 283
Cpgi3398 11 82763827 to 82764980 1153 CpG island CpG island 3398
D11Pas30 11 82763861 to 82763960 99 DNA segment DNA segment, Chr 11, Pasteur Institute 30
Tssr109571 11 82763874 to 82763885 11 - TSS region transcription start site region 109571
Tssr109572 11 82764227 to 82764240 13 - TSS region transcription start site region 109572
Tssr109573 11 82764241 to 82764273 32 - TSS region transcription start site region 109573
Tssr109574 11 82764274 to 82764277 3 - TSS region transcription start site region 109574
Tssr109575 11 82764287 to 82764297 10 - TSS region transcription start site region 109575
Tssr109576 11 82764303 to 82764329 26 - TSS region transcription start site region 109576
Tssr103578 11 82764332 to 82764373 41 + TSS region transcription start site region 103578
Zfp830 11 82764345 to 82765935 1590 + protein coding gene zinc finger protein 830
Tssr109577 11 82764772 to 82764786 14 - TSS region transcription start site region 109577
Gm11423 11 82779601 to 82781042 1441 - antisense lncRNA gene predicted gene 11423
Cpgi3399 11 82780888 to 82781895 1007 CpG island CpG island 3399
Tssr109578 11 82781039 to 82781082 43 - TSS region transcription start site region 109578
Lig3 11 82781109 to 82804274 23165 + protein coding gene ligase III, DNA, ATP-dependent
Tssr103579 11 82781144 to 82781224 80 + TSS region transcription start site region 103579
Tssr103580 11 82781230 to 82781255 25 + TSS region transcription start site region 103580
Tssr103581 11 82783331 to 82783342 11 + TSS region transcription start site region 103581
Tssr103582 11 82785370 to 82785378 8 + TSS region transcription start site region 103582
Rffl 11 82803819 to 82871238 67419 - protein coding gene ring finger and FYVE like domain containing protein
Tssr109579 11 82804423 to 82804428 5 - TSS region transcription start site region 109579
Tssr109580 11 82807539 to 82807542 3 - TSS region transcription start site region 109580
Tssr103583 11 82827760 to 82827766 6 + TSS region transcription start site region 103583
Tssr109581 11 82829024 to 82829042 18 - TSS region transcription start site region 109581
D11Pas73 11 82829080 to 82829190 110 DNA segment DNA segment, Chr 11, Pasteur Institute 73
Tssr103584 11 82829121 to 82829168 47 + TSS region transcription start site region 103584
29.MMHAP71FLB5.seq 11 82831021 to 82831178 157 DNA segment DNA segment, 29.MMHAP71FLB5.seq
D11Pas70 11 82832450 to 82832600 150 DNA segment DNA segment, Chr 11, Pasteur Institute 70
Tssr109582 11 82845835 to 82845856 21 - TSS region transcription start site region 109582
Tssr109583 11 82845870 to 82845900 30 - TSS region transcription start site region 109583
Tssr109584 11 82845907 to 82845923 16 - TSS region transcription start site region 109584
A130086G11Rik 11 82857876 to 82859987 2111 unclassified gene RIKEN cDNA A130086G11 gene
D11Pas74 11 82859123 to 82859266 143 DNA segment DNA segment, Chr 11, Pasteur Institute 74
Tssr109585 11 82866142 to 82866146 4 - TSS region transcription start site region 109585
Tssr109586 11 82867349 to 82867351 2 - TSS region transcription start site region 109586
Tssr103585 11 82870410 to 82870433 23 + TSS region transcription start site region 103585
Cpgi3400 11 82870566 to 82871594 1028 CpG island CpG island 3400
Tssr109587 11 82871087 to 82871098 11 - TSS region transcription start site region 109587
Tssr109588 11 82871106 to 82871121 15 - TSS region transcription start site region 109588
Tssr109589 11 82871133 to 82871183 50 - TSS region transcription start site region 109589
Rad51d 11 82876434 to 82890614 14180 - protein coding gene RAD51 paralog D
Tssr109590 11 82889986 to 82890001 15 - TSS region transcription start site region 109590
Tssr109591 11 82890021 to 82890032 11 - TSS region transcription start site region 109591
Cpgi3401 11 82890134 to 82890748 614 CpG island CpG island 3401
Tssr109592 11 82890501 to 82890534 33 - TSS region transcription start site region 109592
Tssr109593 11 82890541 to 82890626 85 - TSS region transcription start site region 109593
Tssr103586 11 82892116 to 82892128 12 + TSS region transcription start site region 103586
Tssr3604 11 82892129 to 82892135 6 + TSS region transcription start site region 3604
Fndc8 11 82892145 to 82900737 8592 + protein coding gene fibronectin type III domain containing 8
Nle1 11 82900768 to 82908411 7643 - protein coding gene notchless homolog 1
Cpgi3402 11 82907614 to 82908625 1011 CpG island CpG island 3402
Tssr109594 11 82908230 to 82908249 19 - TSS region transcription start site region 109594
Tssr109595 11 82908360 to 82908400 40 - TSS region transcription start site region 109595
Tssr109596 11 82910783 to 82910803 20 - TSS region transcription start site region 109596
Unc45b 11 82911253 to 82943406 32153 + protein coding gene unc-45 myosin chaperone B
Tssr103587 11 82911279 to 82911294 15 + TSS region transcription start site region 103587
Tssr103588 11 82911309 to 82911331 22 + TSS region transcription start site region 103588
Unc45bos 11 82924903 to 82933382 8479 - lncRNA gene unc-45 myosin chaperone B, opposite strand
Cpgi3403 11 82926025 to 82926211 186 CpG island CpG island 3403
D11Pas77 11 82928659 to 82928749 90 DNA segment DNA segment, Chr 11, Pasteur Institute 77
Cpgi3404 11 82929993 to 82932223 2230 CpG island CpG island 3404
Cpgi3405 11 82932478 to 82933782 1304 CpG island CpG island 3405
Tssr103589 11 82933484 to 82933488 4 + TSS region transcription start site region 103589
D11Pas71 11 82939605 to 82939758 153 DNA segment DNA segment, Chr 11, Pasteur Institute 71
Slfn5os 11 82942341 to 82960681 18340 - antisense lncRNA gene schlafen 5, opposite strand
Tssr103590 11 82951346 to 82951360 14 + TSS region transcription start site region 103590
Slfn5 11 82951349 to 82964840 13491 + protein coding gene schlafen 5
Tssr103591 11 82951366 to 82951393 27 + TSS region transcription start site region 103591
Tssr103592 11 82951406 to 82951448 42 + TSS region transcription start site region 103592
Cpgi3406 11 82952050 to 82952216 166 CpG island CpG island 3406
Tssr103593 11 82952062 to 82952094 32 + TSS region transcription start site region 103593
Tssr103594 11 82952095 to 82952125 30 + TSS region transcription start site region 103594
Tssr103595 11 82954556 to 82954575 19 + TSS region transcription start site region 103595