Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:82051722-82602305

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq3 11 73846715 to 82178599 8331884 QTL open field activity QTL 3
Ccl11 11 82057832 to 82062955 5123 + protein coding gene chemokine (C-C motif) ligand 11
Tssr103565 11 82057845 to 82057856 11 + TSS region transcription start site region 103565
Tssr103566 11 82057885 to 82057888 3 + TSS region transcription start site region 103566
Tssr103567 11 82057914 to 82057929 15 + TSS region transcription start site region 103567
Gm38913 11 82066591 to 82071202 4611 - lncRNA gene predicted gene, 38913
D11Pas19 11 82068474 to 82068583 109 DNA segment DNA segment, Chr 11, Pasteur Institute 19
Tssr103568 11 82101818 to 82101829 11 + TSS region transcription start site region 103568
Tssr103569 11 82101836 to 82101849 13 + TSS region transcription start site region 103569
Ccl12 11 82101845 to 82103399 1554 + protein coding gene chemokine (C-C motif) ligand 12
Tssr103570 11 82115180 to 82115186 6 + TSS region transcription start site region 103570
Ccl8 11 82115185 to 82116799 1614 + protein coding gene chemokine (C-C motif) ligand 8
Tssr103571 11 82167092 to 82167114 22 + TSS region transcription start site region 103571
D11Bhm140 11 82168642 to 82168696 54 DNA segment DNA segment, Chr 11, Boehm 140
Ccl1 11 82176666 to 82179812 3146 - protein coding gene chemokine (C-C motif) ligand 1
Tssr109566 11 82179808 to 82179815 7 - TSS region transcription start site region 109566
Tssr109567 11 82179896 to 82179918 22 - TSS region transcription start site region 109567
Tssr103572 11 82180115 to 82180152 37 + TSS region transcription start site region 103572
Tssr103573 11 82215149 to 82215162 13 + TSS region transcription start site region 103573
D11Pas34 11 82236954 to 82237117 163 DNA segment DNA segment, Chr 11, Pasteur Institute 34
D11Pas37 11 82245170 to 82245254 84 DNA segment DNA segment, Chr 11, Pasteur Institute 37
D11Pas43 11 82245873 to 82246046 173 DNA segment DNA segment, Chr 11, Pasteur Institute 43
D11Pas24 11 82255656 to 82255807 151 DNA segment DNA segment, Chr 11, Pasteur Institute 24
D11Pas42 11 82260573 to 82260653 80 DNA segment DNA segment, Chr 11, Pasteur Institute 42
D11Pas38 11 82263509 to 82263801 292 DNA segment DNA segment, Chr 11, Pasteur Institute 38
D11Pas8 11 82272065 to 82272221 156 DNA segment DNA segment, Chr 11, Pasteur Institute 8
D11Pas31 11 82292234 to 82292318 84 DNA segment DNA segment, Chr 11, Pasteur Institute 31
D11Pas40 11 82293913 to 82294247 334 DNA segment DNA segment, Chr 11, Pasteur Institute 40
D11Pas44 11 82302712 to 82302808 96 DNA segment DNA segment, Chr 11, Pasteur Institute 44
D11Pas39 11 82326722 to 82327305 583 DNA segment DNA segment, Chr 11, Pasteur Institute 39
D11Pas45 11 82338951 to 82339129 178 DNA segment DNA segment, Chr 11, Pasteur Institute 45
D11Pas47 11 82354123 to 82354293 170 DNA segment DNA segment, Chr 11, Pasteur Institute 47
D11Pas46 11 82361347 to 82361536 189 DNA segment DNA segment, Chr 11, Pasteur Institute 46
D11Pas32 11 82367652 to 82367801 149 DNA segment DNA segment, Chr 11, Pasteur Institute 32
Gm38577 11 82382796 to 82387340 4544 - lincRNA gene predicted gene, 38577
Cpgi3395 11 82386773 to 82390281 3508 CpG island CpG island 3395
Tssr103574 11 82387441 to 82387502 61 + TSS region transcription start site region 103574
Tssr103575 11 82387557 to 82387568 11 + TSS region transcription start site region 103575
22.MMHAP6FLH1.seq 11 82387846 to 82387998 152 DNA segment DNA segment, 22.MMHAP6FLH1.seq
Tssr103576 11 82388894 to 82388949 55 + TSS region transcription start site region 103576
Tmem132e 11 82388900 to 82446332 57432 + protein coding gene transmembrane protein 132E
D11Pas11 11 82389311 to 82389429 118 DNA segment DNA segment, Chr 11, Pasteur Institute 11
D11Pas48 11 82424666 to 82424929 263 DNA segment DNA segment, Chr 11, Pasteur Institute 48
Cpgi3396 11 82434152 to 82435316 1164 CpG island CpG island 3396
D11Pas12 11 82434201 to 82434456 255 DNA segment DNA segment, Chr 11, Pasteur Institute 12
Tssr103577 11 82434831 to 82434833 2 + TSS region transcription start site region 103577
D11Pas49 11 82436213 to 82436442 229 DNA segment DNA segment, Chr 11, Pasteur Institute 49
D11Pas13 11 82436529 to 82437711 1182 DNA segment DNA segment, Chr 11, Pasteur Institute 13
D11Pas23 11 82436904 to 82437342 438 DNA segment DNA segment, Chr 11, Pasteur Institute 23
D11Bhm141 11 82437426 to 82437504 78 DNA segment DNA segment, Chr 11, Boehm 141
D11Pas57 11 82440125 to 82440202 77 DNA segment DNA segment, Chr 11, Pasteur Institute 57
D11Pas50 11 82443702 to 82443815 113 DNA segment DNA segment, Chr 11, Pasteur Institute 50
Cpgi3397 11 82444426 to 82445223 797 CpG island CpG island 3397
D11Pas56 11 82450775 to 82451016 241 DNA segment DNA segment, Chr 11, Pasteur Institute 56
D11Pas54 11 82472663 to 82472820 157 DNA segment DNA segment, Chr 11, Pasteur Institute 54
D11Pas55 11 82474326 to 82474464 138 DNA segment DNA segment, Chr 11, Pasteur Institute 55
D11Pas52 11 82475335 to 82475433 98 DNA segment DNA segment, Chr 11, Pasteur Institute 52
D11Pas53 11 82475617 to 82476449 832 DNA segment DNA segment, Chr 11, Pasteur Institute 53
D11Pas25 11 82514584 to 82514823 239 DNA segment DNA segment, Chr 11, Pasteur Institute 25
D11Pas58 11 82534354 to 82534568 214 DNA segment DNA segment, Chr 11, Pasteur Institute 58
D11Pas26 11 82537104 to 82537565 461 DNA segment DNA segment, Chr 11, Pasteur Institute 26
D11Pas59 11 82541430 to 82541823 393 DNA segment DNA segment, Chr 11, Pasteur Institute 59
D11Pas61 11 82545102 to 82545184 82 DNA segment DNA segment, Chr 11, Pasteur Institute 61
D11Pas60 11 82551243 to 82551332 89 DNA segment DNA segment, Chr 11, Pasteur Institute 60
D11Pas28 11 82564333 to 82564494 161 DNA segment DNA segment, Chr 11, Pasteur Institute 28
D11Pas27 11 82571631 to 82571747 116 DNA segment DNA segment, Chr 11, Pasteur Institute 27
D11Pas62 11 82581215 to 82581299 84 DNA segment DNA segment, Chr 11, Pasteur Institute 62
D11Pas63 11 82586820 to 82586899 79 DNA segment DNA segment, Chr 11, Pasteur Institute 63
Gm24612 11 82596073 to 82596179 106 - snRNA gene predicted gene, 24612