Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:81955783-83865803

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619 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mol4 11 36391750 to 83590530 47198780 QTL modifier of LPS-response 4
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Opfaq3 11 73846715 to 82178599 8331884 QTL open field activity QTL 3
Asic2 11 80880163 to 81968396 1088233 - protein coding gene acid-sensing (proton-gated) ion channel 2
Tssr109563 11 81968415 to 81968426 11 - TSS region transcription start site region 109563
Cpgi3394 11 81968461 to 81968938 477 CpG island CpG island 3394
D11Pas22 11 81970236 to 81970314 78 DNA segment DNA segment, Chr 11, Pasteur Institute 22
Gm31522 11 81980578 to 81986657 6079 - lincRNA gene predicted gene, 31522
Gm11419 11 81985406 to 81988769 3363 + lincRNA gene predicted gene 11419
Tssr103557 11 81985649 to 81985690 41 + TSS region transcription start site region 103557
D11Pas21 11 81988547 to 81988667 120 DNA segment DNA segment, Chr 11, Pasteur Institute 21
D11Pas20 11 81999272 to 81999429 157 DNA segment DNA segment, Chr 11, Pasteur Institute 20
D11Bhm138 11 82003325 to 82003380 55 DNA segment DNA segment, Chr 11, Boehm 138
Tssr109564 11 82006827 to 82006840 13 - TSS region transcription start site region 109564
Tssr109565 11 82006846 to 82006857 11 - TSS region transcription start site region 109565
D11Bhm139 11 82011815 to 82011897 82 DNA segment DNA segment, Chr 11, Boehm 139
Tssr103558 11 82023009 to 82023014 5 + TSS region transcription start site region 103558
Gm17268 11 82028224 to 82038562 10338 - protein coding gene predicted gene, 17268
Tssr103559 11 82035569 to 82035585 16 + TSS region transcription start site region 103559
Ccl2 11 82035577 to 82037452 1875 + protein coding gene chemokine (C-C motif) ligand 2
Tssr103560 11 82036188 to 82036190 2 + TSS region transcription start site region 103560
Tssr103561 11 82036480 to 82036498 18 + TSS region transcription start site region 103561
Tssr103562 11 82045537 to 82045558 21 + TSS region transcription start site region 103562
Tssr103563 11 82045705 to 82045721 16 + TSS region transcription start site region 103563
Ccl7 11 82045712 to 82047525 1813 + protein coding gene chemokine (C-C motif) ligand 7
Tssr103564 11 82046518 to 82046529 11 + TSS region transcription start site region 103564
Ccl11 11 82057832 to 82062955 5123 + protein coding gene chemokine (C-C motif) ligand 11
Tssr103565 11 82057845 to 82057856 11 + TSS region transcription start site region 103565
Tssr103566 11 82057885 to 82057888 3 + TSS region transcription start site region 103566
Tssr103567 11 82057914 to 82057929 15 + TSS region transcription start site region 103567
Gm38913 11 82066591 to 82071202 4611 - lncRNA gene predicted gene, 38913
D11Pas19 11 82068474 to 82068583 109 DNA segment DNA segment, Chr 11, Pasteur Institute 19
Tssr103568 11 82101818 to 82101829 11 + TSS region transcription start site region 103568
Tssr103569 11 82101836 to 82101849 13 + TSS region transcription start site region 103569
Ccl12 11 82101845 to 82103399 1554 + protein coding gene chemokine (C-C motif) ligand 12
Tssr103570 11 82115180 to 82115186 6 + TSS region transcription start site region 103570
Ccl8 11 82115185 to 82116799 1614 + protein coding gene chemokine (C-C motif) ligand 8
Tssr103571 11 82167092 to 82167114 22 + TSS region transcription start site region 103571
D11Bhm140 11 82168642 to 82168696 54 DNA segment DNA segment, Chr 11, Boehm 140
Ccl1 11 82176666 to 82179812 3146 - protein coding gene chemokine (C-C motif) ligand 1
Tssr109566 11 82179808 to 82179815 7 - TSS region transcription start site region 109566
Tssr109567 11 82179896 to 82179918 22 - TSS region transcription start site region 109567
Tssr103572 11 82180115 to 82180152 37 + TSS region transcription start site region 103572
Tssr103573 11 82215149 to 82215162 13 + TSS region transcription start site region 103573
D11Pas34 11 82236954 to 82237117 163 DNA segment DNA segment, Chr 11, Pasteur Institute 34
D11Pas37 11 82245170 to 82245254 84 DNA segment DNA segment, Chr 11, Pasteur Institute 37
D11Pas43 11 82245873 to 82246046 173 DNA segment DNA segment, Chr 11, Pasteur Institute 43
D11Pas24 11 82255656 to 82255807 151 DNA segment DNA segment, Chr 11, Pasteur Institute 24
D11Pas42 11 82260573 to 82260653 80 DNA segment DNA segment, Chr 11, Pasteur Institute 42
D11Pas38 11 82263509 to 82263801 292 DNA segment DNA segment, Chr 11, Pasteur Institute 38
D11Pas8 11 82272065 to 82272221 156 DNA segment DNA segment, Chr 11, Pasteur Institute 8
D11Pas31 11 82292234 to 82292318 84 DNA segment DNA segment, Chr 11, Pasteur Institute 31
D11Pas40 11 82293913 to 82294247 334 DNA segment DNA segment, Chr 11, Pasteur Institute 40
D11Pas44 11 82302712 to 82302808 96 DNA segment DNA segment, Chr 11, Pasteur Institute 44
D11Pas39 11 82326722 to 82327305 583 DNA segment DNA segment, Chr 11, Pasteur Institute 39
D11Pas45 11 82338951 to 82339129 178 DNA segment DNA segment, Chr 11, Pasteur Institute 45
D11Pas47 11 82354123 to 82354293 170 DNA segment DNA segment, Chr 11, Pasteur Institute 47
D11Pas46 11 82361347 to 82361536 189 DNA segment DNA segment, Chr 11, Pasteur Institute 46
D11Pas32 11 82367652 to 82367801 149 DNA segment DNA segment, Chr 11, Pasteur Institute 32
Gm38577 11 82382796 to 82387340 4544 - lincRNA gene predicted gene, 38577
Cpgi3395 11 82386773 to 82390281 3508 CpG island CpG island 3395
Tssr103574 11 82387441 to 82387502 61 + TSS region transcription start site region 103574
Tssr103575 11 82387557 to 82387568 11 + TSS region transcription start site region 103575
22.MMHAP6FLH1.seq 11 82387846 to 82387998 152 DNA segment DNA segment, 22.MMHAP6FLH1.seq
Tssr103576 11 82388894 to 82388949 55 + TSS region transcription start site region 103576
Tmem132e 11 82388900 to 82446332 57432 + protein coding gene transmembrane protein 132E
D11Pas11 11 82389311 to 82389429 118 DNA segment DNA segment, Chr 11, Pasteur Institute 11
D11Pas48 11 82424666 to 82424929 263 DNA segment DNA segment, Chr 11, Pasteur Institute 48
Cpgi3396 11 82434152 to 82435316 1164 CpG island CpG island 3396
D11Pas12 11 82434201 to 82434456 255 DNA segment DNA segment, Chr 11, Pasteur Institute 12
Tssr103577 11 82434831 to 82434833 2 + TSS region transcription start site region 103577
D11Pas49 11 82436213 to 82436442 229 DNA segment DNA segment, Chr 11, Pasteur Institute 49
D11Pas13 11 82436529 to 82437711 1182 DNA segment DNA segment, Chr 11, Pasteur Institute 13
D11Pas23 11 82436904 to 82437342 438 DNA segment DNA segment, Chr 11, Pasteur Institute 23
D11Bhm141 11 82437426 to 82437504 78 DNA segment DNA segment, Chr 11, Boehm 141
D11Pas57 11 82440125 to 82440202 77 DNA segment DNA segment, Chr 11, Pasteur Institute 57
D11Pas50 11 82443702 to 82443815 113 DNA segment DNA segment, Chr 11, Pasteur Institute 50
Cpgi3397 11 82444426 to 82445223 797 CpG island CpG island 3397
D11Pas56 11 82450775 to 82451016 241 DNA segment DNA segment, Chr 11, Pasteur Institute 56
D11Pas54 11 82472663 to 82472820 157 DNA segment DNA segment, Chr 11, Pasteur Institute 54
D11Pas55 11 82474326 to 82474464 138 DNA segment DNA segment, Chr 11, Pasteur Institute 55
D11Pas52 11 82475335 to 82475433 98 DNA segment DNA segment, Chr 11, Pasteur Institute 52
D11Pas53 11 82475617 to 82476449 832 DNA segment DNA segment, Chr 11, Pasteur Institute 53
D11Pas25 11 82514584 to 82514823 239 DNA segment DNA segment, Chr 11, Pasteur Institute 25
D11Pas58 11 82534354 to 82534568 214 DNA segment DNA segment, Chr 11, Pasteur Institute 58
D11Pas26 11 82537104 to 82537565 461 DNA segment DNA segment, Chr 11, Pasteur Institute 26
D11Pas59 11 82541430 to 82541823 393 DNA segment DNA segment, Chr 11, Pasteur Institute 59
D11Pas61 11 82545102 to 82545184 82 DNA segment DNA segment, Chr 11, Pasteur Institute 61
D11Pas60 11 82551243 to 82551332 89 DNA segment DNA segment, Chr 11, Pasteur Institute 60
D11Pas28 11 82564333 to 82564494 161 DNA segment DNA segment, Chr 11, Pasteur Institute 28
D11Pas27 11 82571631 to 82571747 116 DNA segment DNA segment, Chr 11, Pasteur Institute 27
D11Pas62 11 82581215 to 82581299 84 DNA segment DNA segment, Chr 11, Pasteur Institute 62
D11Pas63 11 82586820 to 82586899 79 DNA segment DNA segment, Chr 11, Pasteur Institute 63
Gm24612 11 82596073 to 82596179 106 - snRNA gene predicted gene, 24612
Tssr109568 11 82607184 to 82607185 1 - TSS region transcription start site region 109568
D11Pas29 11 82623868 to 82623984 116 DNA segment DNA segment, Chr 11, Pasteur Institute 29
Gm11426 11 82633353 to 82636309 2956 + lincRNA gene predicted gene 11426
D11Mit354 11 82662727 to 82662827 100 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 354
D11Pas68 11 82666751 to 82666984 233 DNA segment DNA segment, Chr 11, Pasteur Institute 68
D11Pas67 11 82679233 to 82679387 154 DNA segment DNA segment, Chr 11, Pasteur Institute 67
D11Mit66 11 82694218 to 82694372 154 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 66
D11Pas66 11 82699105 to 82699317 212 DNA segment DNA segment, Chr 11, Pasteur Institute 66
D11Pas33 11 82715005 to 82715246 241 DNA segment DNA segment, Chr 11, Pasteur Institute 33
Tssr109569 11 82715447 to 82715449 2 - TSS region transcription start site region 109569
Cct6b 11 82719250 to 82764321 45071 - protein coding gene chaperonin containing Tcp1, subunit 6b (zeta)
Gm11421 11 82725143 to 82725436 293 + pseudogene predicted gene 11421
Gm11422 11 82728000 to 82729096 1096 + pseudogene predicted gene 11422
Gm11420 11 82745804 to 82746205 401 - pseudogene predicted gene 11420
Tssr109570 11 82751494 to 82751536 42 - TSS region transcription start site region 109570
D11Mit283 11 82757436 to 82757603 167 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 283
Cpgi3398 11 82763827 to 82764980 1153 CpG island CpG island 3398
D11Pas30 11 82763861 to 82763960 99 DNA segment DNA segment, Chr 11, Pasteur Institute 30
Tssr109571 11 82763874 to 82763885 11 - TSS region transcription start site region 109571
Tssr109572 11 82764227 to 82764240 13 - TSS region transcription start site region 109572
Tssr109573 11 82764241 to 82764273 32 - TSS region transcription start site region 109573
Tssr109574 11 82764274 to 82764277 3 - TSS region transcription start site region 109574
Tssr109575 11 82764287 to 82764297 10 - TSS region transcription start site region 109575
Tssr109576 11 82764303 to 82764329 26 - TSS region transcription start site region 109576
Tssr103578 11 82764332 to 82764373 41 + TSS region transcription start site region 103578
Zfp830 11 82764345 to 82765935 1590 + protein coding gene zinc finger protein 830
Tssr109577 11 82764772 to 82764786 14 - TSS region transcription start site region 109577
Gm11423 11 82779601 to 82781042 1441 - antisense lncRNA gene predicted gene 11423
Cpgi3399 11 82780888 to 82781895 1007 CpG island CpG island 3399
Tssr109578 11 82781039 to 82781082 43 - TSS region transcription start site region 109578
Lig3 11 82781109 to 82804274 23165 + protein coding gene ligase III, DNA, ATP-dependent
Tssr103579 11 82781144 to 82781224 80 + TSS region transcription start site region 103579
Tssr103580 11 82781230 to 82781255 25 + TSS region transcription start site region 103580
Tssr103581 11 82783331 to 82783342 11 + TSS region transcription start site region 103581
Tssr103582 11 82785370 to 82785378 8 + TSS region transcription start site region 103582
Rffl 11 82803819 to 82871238 67419 - protein coding gene ring finger and FYVE like domain containing protein
Tssr109579 11 82804423 to 82804428 5 - TSS region transcription start site region 109579
Tssr109580 11 82807539 to 82807542 3 - TSS region transcription start site region 109580
Tssr103583 11 82827760 to 82827766 6 + TSS region transcription start site region 103583
Tssr109581 11 82829024 to 82829042 18 - TSS region transcription start site region 109581
D11Pas73 11 82829080 to 82829190 110 DNA segment DNA segment, Chr 11, Pasteur Institute 73
Tssr103584 11 82829121 to 82829168 47 + TSS region transcription start site region 103584
29.MMHAP71FLB5.seq 11 82831021 to 82831178 157 DNA segment DNA segment, 29.MMHAP71FLB5.seq
D11Pas70 11 82832450 to 82832600 150 DNA segment DNA segment, Chr 11, Pasteur Institute 70
Tssr109582 11 82845835 to 82845856 21 - TSS region transcription start site region 109582
Tssr109583 11 82845870 to 82845900 30 - TSS region transcription start site region 109583
Tssr109584 11 82845907 to 82845923 16 - TSS region transcription start site region 109584
A130086G11Rik 11 82857876 to 82859987 2111 unclassified gene RIKEN cDNA A130086G11 gene
D11Pas74 11 82859123 to 82859266 143 DNA segment DNA segment, Chr 11, Pasteur Institute 74
Tssr109585 11 82866142 to 82866146 4 - TSS region transcription start site region 109585
Tssr109586 11 82867349 to 82867351 2 - TSS region transcription start site region 109586
Tssr103585 11 82870410 to 82870433 23 + TSS region transcription start site region 103585
Cpgi3400 11 82870566 to 82871594 1028 CpG island CpG island 3400
Tssr109587 11 82871087 to 82871098 11 - TSS region transcription start site region 109587
Tssr109588 11 82871106 to 82871121 15 - TSS region transcription start site region 109588
Tssr109589 11 82871133 to 82871183 50 - TSS region transcription start site region 109589
Rad51d 11 82876434 to 82890614 14180 - protein coding gene RAD51 paralog D
Tssr109590 11 82889986 to 82890001 15 - TSS region transcription start site region 109590
Tssr109591 11 82890021 to 82890032 11 - TSS region transcription start site region 109591
Cpgi3401 11 82890134 to 82890748 614 CpG island CpG island 3401
Tssr109592 11 82890501 to 82890534 33 - TSS region transcription start site region 109592
Tssr109593 11 82890541 to 82890626 85 - TSS region transcription start site region 109593
Tssr103586 11 82892116 to 82892128 12 + TSS region transcription start site region 103586
Tssr3604 11 82892129 to 82892135 6 + TSS region transcription start site region 3604
Fndc8 11 82892145 to 82900737 8592 + protein coding gene fibronectin type III domain containing 8
Nle1 11 82900768 to 82908411 7643 - protein coding gene notchless homolog 1
Cpgi3402 11 82907614 to 82908625 1011 CpG island CpG island 3402
Tssr109594 11 82908230 to 82908249 19 - TSS region transcription start site region 109594
Tssr109595 11 82908360 to 82908400 40 - TSS region transcription start site region 109595
Tssr109596 11 82910783 to 82910803 20 - TSS region transcription start site region 109596
Unc45b 11 82911253 to 82943406 32153 + protein coding gene unc-45 myosin chaperone B
Tssr103587 11 82911279 to 82911294 15 + TSS region transcription start site region 103587
Tssr103588 11 82911309 to 82911331 22 + TSS region transcription start site region 103588
Unc45bos 11 82924903 to 82933382 8479 - lncRNA gene unc-45 myosin chaperone B, opposite strand
Cpgi3403 11 82926025 to 82926211 186 CpG island CpG island 3403
D11Pas77 11 82928659 to 82928749 90 DNA segment DNA segment, Chr 11, Pasteur Institute 77
Cpgi3404 11 82929993 to 82932223 2230 CpG island CpG island 3404
Cpgi3405 11 82932478 to 82933782 1304 CpG island CpG island 3405
Tssr103589 11 82933484 to 82933488 4 + TSS region transcription start site region 103589
D11Pas71 11 82939605 to 82939758 153 DNA segment DNA segment, Chr 11, Pasteur Institute 71
Slfn5os 11 82942341 to 82960681 18340 - antisense lncRNA gene schlafen 5, opposite strand
Tssr103590 11 82951346 to 82951360 14 + TSS region transcription start site region 103590
Slfn5 11 82951349 to 82964840 13491 + protein coding gene schlafen 5
Tssr103591 11 82951366 to 82951393 27 + TSS region transcription start site region 103591
Tssr103592 11 82951406 to 82951448 42 + TSS region transcription start site region 103592
Cpgi3406 11 82952050 to 82952216 166 CpG island CpG island 3406
Tssr103593 11 82952062 to 82952094 32 + TSS region transcription start site region 103593
Tssr103594 11 82952095 to 82952125 30 + TSS region transcription start site region 103594
Tssr103595 11 82954556 to 82954575 19 + TSS region transcription start site region 103595
Tssr103596 11 82956593 to 82956604 11 + TSS region transcription start site region 103596
Tssr103597 11 82956894 to 82956905 11 + TSS region transcription start site region 103597
Tssr103598 11 82956945 to 82956959 14 + TSS region transcription start site region 103598
Tssr109597 11 82960648 to 82960671 23 - TSS region transcription start site region 109597
Tssr109598 11 82960673 to 82960683 10 - TSS region transcription start site region 109598
Tssr109599 11 82960693 to 82960698 5 - TSS region transcription start site region 109599
Tssr103599 11 82960895 to 82960906 11 + TSS region transcription start site region 103599
Tssr103600 11 82961260 to 82961272 12 + TSS region transcription start site region 103600
Tssr103601 11 82961517 to 82961544 27 + TSS region transcription start site region 103601
Tssr103602 11 82961700 to 82961743 43 + TSS region transcription start site region 103602
Tssr103603 11 82961835 to 82961849 14 + TSS region transcription start site region 103603
Tssr103604 11 82962112 to 82962129 17 + TSS region transcription start site region 103604
Tssr103605 11 82962320 to 82962338 18 + TSS region transcription start site region 103605
Tssr103606 11 82962641 to 82962684 43 + TSS region transcription start site region 103606
Tssr103607 11 82962773 to 82962785 12 + TSS region transcription start site region 103607
Tssr103608 11 82962869 to 82962880 11 + TSS region transcription start site region 103608
Tssr3605 11 82962984 to 82962985 1 + TSS region transcription start site region 3605