Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80825013-81962491

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr15 11 63428581 to 81939647 18511066 QTL leishmaniasis resistance 15
Ltxs3 11 77683047 to 80855532 3172485 QTL lethal factor toxin susceptibility 3
4930507D10Rik 11 80850381 to 80858300 7919 - antisense lncRNA gene RIKEN cDNA 4930507D10 gene
D11Bhm169 11 80855289 to 80855532 243 DNA segment DNA segment, Chr 11, Boehm 169
Tssr109550 11 80858210 to 80858213 3 - TSS region transcription start site region 109550
Tssr109551 11 80858277 to 80858287 10 - TSS region transcription start site region 109551
Tssr109552 11 80858290 to 80858304 14 - TSS region transcription start site region 109552
Tssr109553 11 80858312 to 80858321 9 - TSS region transcription start site region 109553
Tssr103553 11 80858358 to 80858367 9 + TSS region transcription start site region 103553
Tssr103554 11 80858384 to 80858394 10 + TSS region transcription start site region 103554
Spaca3 11 80858389 to 80867814 9425 + protein coding gene sperm acrosome associated 3
Tssr103555 11 80858399 to 80858428 29 + TSS region transcription start site region 103555
D11Bhm128 11 80860056 to 80860152 96 DNA segment DNA segment, Chr 11, Boehm 128
Asic2 11 80880163 to 81968396 1088233 - protein coding gene acid-sensing (proton-gated) ion channel 2
Tssr3602 11 80978031 to 80978034 3 + TSS region transcription start site region 3602
Gm11416 11 81048115 to 81048768 653 + pseudogene predicted gene 11416
Gm11417 11 81072403 to 81083358 10955 + antisense lncRNA gene predicted gene 11417
Tssr109554 11 81075752 to 81075753 1 - TSS region transcription start site region 109554
Cpgi3391 11 81151588 to 81154151 2563 CpG island CpG island 3391
Tssr109555 11 81153603 to 81153642 39 - TSS region transcription start site region 109555
Tssr109556 11 81153645 to 81153662 17 - TSS region transcription start site region 109556
Tssr109557 11 81153705 to 81153719 14 - TSS region transcription start site region 109557
Gm42084 11 81243905 to 81252614 8709 - lncRNA gene predicted gene, 42084
D11Mit319 11 81261692 to 81261796 104 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 319
4930527B05Rik 11 81385013 to 81402491 17478 + antisense lncRNA gene RIKEN cDNA 4930527B05 gene
Cpgi3392 11 81572630 to 81573186 556 CpG island CpG island 3392
1700071K01Rik 11 81572655 to 81573473 818 - pseudogene RIKEN cDNA 1700071K01 gene
Cpgi3393 11 81573450 to 81573651 201 CpG island CpG island 3393
Tssr109558 11 81573516 to 81573542 26 - TSS region transcription start site region 109558
Tssr103556 11 81587353 to 81587364 11 + TSS region transcription start site region 103556
Gm11418 11 81587361 to 81593478 6117 + antisense lncRNA gene predicted gene 11418
Tssr109559 11 81593114 to 81593118 4 - TSS region transcription start site region 109559
D11Bhm129 11 81663480 to 81663695 215 DNA segment DNA segment, Chr 11, Boehm 129
D11Bhm30 11 81670807 to 81671002 195 DNA segment DNA segment, Chr 11, Boehm 30
D11Bhm131 11 81674905 to 81675012 107 DNA segment DNA segment, Chr 11, Boehm 131
Tssr3603 11 81675965 to 81675968 3 + TSS region transcription start site region 3603
D11Bhm132 11 81709358 to 81709523 165 DNA segment DNA segment, Chr 11, Boehm 132
D11Bhm133 11 81732748 to 81732893 145 DNA segment DNA segment, Chr 11, Boehm 133
D11Bhm134 11 81743632 to 81743741 109 DNA segment DNA segment, Chr 11, Boehm 134
D11Bhm135 11 81750818 to 81750953 135 DNA segment DNA segment, Chr 11, Boehm 135
D11Mit93 11 81764112 to 81764312 200 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 93
D11Bhm171 11 81775220 to 81775372 152 DNA segment DNA segment, Chr 11, Boehm 171
D11Mit33 11 81775249 to 81775376 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 33
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
D11Bhm172 11 81777430 to 81777535 105 DNA segment DNA segment, Chr 11, Boehm 172
D11Bhm174 11 81817221 to 81817359 138 DNA segment DNA segment, Chr 11, Boehm 174
D11Bhm136 11 81817934 to 81818026 92 DNA segment DNA segment, Chr 11, Boehm 136
D11Mit68.1 11 81818450 to 81818564 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 68.1
D11Mit68 11 81818482 to 81818705 223 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 68
D11Bhm175 11 81826445 to 81826659 214 DNA segment DNA segment, Chr 11, Boehm 175
D11Bhm173 11 81848954 to 81849193 239 DNA segment DNA segment, Chr 11, Boehm 173
Tssr109560 11 81858723 to 81858728 5 - TSS region transcription start site region 109560
5530401A14Rik 11 81860677 to 81894582 33905 + protein coding gene RIKEN cDNA 5530401A14 gene
D11Bhm176 11 81861315 to 81861500 185 DNA segment DNA segment, Chr 11, Boehm 176
Tssr109561 11 81867698 to 81867709 11 - TSS region transcription start site region 109561
Gm46254 11 81869054 to 81910498 41444 - lncRNA gene predicted gene, 46254
D11Bhm137 11 81873527 to 81873588 61 DNA segment DNA segment, Chr 11, Boehm 137
Tssr109562 11 81901934 to 81901938 4 - TSS region transcription start site region 109562
Ltpr6 11 81939510 to 81939647 137 QTL Leishmania tropica response 6
Ltpr6b 11 81939510 to 81939647 137 QTL Leishmania tropica response 6b
Ltpr6a 11 81939510 to 81939647 137 QTL Leishmania tropica response 6a
D11Mit37 11 81939510 to 81939647 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 37