Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80810752-81340753

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ltxs3 11 77683047 to 80855532 3172485 QTL lethal factor toxin susceptibility 3
Gm31228 11 80805815 to 80815685 9870 - lncRNA gene predicted gene, 31228
Cpgi3390 11 80810003 to 80810811 808 CpG island CpG island 3390
Tmem98 11 80810415 to 80822033 11618 + protein coding gene transmembrane protein 98
Gm45953 11 80815706 to 80821184 5478 - lncRNA gene predicted gene, 45953
D11Bhm168 11 80819243 to 80819333 90 DNA segment DNA segment, Chr 11, Boehm 168
Tssr103552 11 80821232 to 80821243 11 + TSS region transcription start site region 103552
Gm11207 11 80822780 to 80823193 413 - pseudogene predicted gene 11207
D11Bhm127 11 80823210 to 80823296 86 DNA segment DNA segment, Chr 11, Boehm 127
4930507D10Rik 11 80850381 to 80858300 7919 - antisense lncRNA gene RIKEN cDNA 4930507D10 gene
D11Bhm169 11 80855289 to 80855532 243 DNA segment DNA segment, Chr 11, Boehm 169
Tssr109550 11 80858210 to 80858213 3 - TSS region transcription start site region 109550
Tssr109551 11 80858277 to 80858287 10 - TSS region transcription start site region 109551
Tssr109552 11 80858290 to 80858304 14 - TSS region transcription start site region 109552
Tssr109553 11 80858312 to 80858321 9 - TSS region transcription start site region 109553
Tssr103553 11 80858358 to 80858367 9 + TSS region transcription start site region 103553
Tssr103554 11 80858384 to 80858394 10 + TSS region transcription start site region 103554
Spaca3 11 80858389 to 80867814 9425 + protein coding gene sperm acrosome associated 3
Tssr103555 11 80858399 to 80858428 29 + TSS region transcription start site region 103555
D11Bhm128 11 80860056 to 80860152 96 DNA segment DNA segment, Chr 11, Boehm 128
Asic2 11 80880163 to 81968396 1088233 - protein coding gene acid-sensing (proton-gated) ion channel 2
Tssr3602 11 80978031 to 80978034 3 + TSS region transcription start site region 3602
Gm11416 11 81048115 to 81048768 653 + pseudogene predicted gene 11416
Gm11417 11 81072403 to 81083358 10955 + antisense lncRNA gene predicted gene 11417
Tssr109554 11 81075752 to 81075753 1 - TSS region transcription start site region 109554
Cpgi3391 11 81151588 to 81154151 2563 CpG island CpG island 3391
Tssr109555 11 81153603 to 81153642 39 - TSS region transcription start site region 109555
Tssr109556 11 81153645 to 81153662 17 - TSS region transcription start site region 109556
Tssr109557 11 81153705 to 81153719 14 - TSS region transcription start site region 109557
Gm42084 11 81243905 to 81252614 8709 - lncRNA gene predicted gene, 42084
D11Mit319 11 81261692 to 81261796 104 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 319