Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80760163-82088396

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr15 11 63428581 to 81939647 18511066 QTL leishmaniasis resistance 15
Ltxs3 11 77683047 to 80855532 3172485 QTL lethal factor toxin susceptibility 3
Myo1d 11 80482126 to 80780025 297899 - protein coding gene myosin ID
Cpgi3389 11 80779325 to 80780558 1233 CpG island CpG island 3389
Tssr109545 11 80779799 to 80779841 42 - TSS region transcription start site region 109545
Tssr109546 11 80779918 to 80779929 11 - TSS region transcription start site region 109546
Tssr109547 11 80779967 to 80779984 17 - TSS region transcription start site region 109547
Tssr109548 11 80779989 to 80780033 44 - TSS region transcription start site region 109548
D11Bhm125 11 80782218 to 80782372 154 DNA segment DNA segment, Chr 11, Boehm 125
D11Bhm126 11 80787232 to 80787296 64 DNA segment DNA segment, Chr 11, Boehm 126
Tssr109549 11 80789863 to 80789864 1 - TSS region transcription start site region 109549
D11Mit92 11 80804901 to 80805034 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 92
Gm31228 11 80805815 to 80815685 9870 - lncRNA gene predicted gene, 31228
Cpgi3390 11 80810003 to 80810811 808 CpG island CpG island 3390
Tssr103551 11 80810357 to 80810404 47 + TSS region transcription start site region 103551
Tmem98 11 80810415 to 80822033 11618 + protein coding gene transmembrane protein 98
Gm45953 11 80815706 to 80821184 5478 - lncRNA gene predicted gene, 45953
D11Bhm168 11 80819243 to 80819333 90 DNA segment DNA segment, Chr 11, Boehm 168
Tssr103552 11 80821232 to 80821243 11 + TSS region transcription start site region 103552
Gm11207 11 80822780 to 80823193 413 - pseudogene predicted gene 11207
D11Bhm127 11 80823210 to 80823296 86 DNA segment DNA segment, Chr 11, Boehm 127
4930507D10Rik 11 80850381 to 80858300 7919 - antisense lncRNA gene RIKEN cDNA 4930507D10 gene
D11Bhm169 11 80855289 to 80855532 243 DNA segment DNA segment, Chr 11, Boehm 169
Tssr109550 11 80858210 to 80858213 3 - TSS region transcription start site region 109550
Tssr109551 11 80858277 to 80858287 10 - TSS region transcription start site region 109551
Tssr109552 11 80858290 to 80858304 14 - TSS region transcription start site region 109552
Tssr109553 11 80858312 to 80858321 9 - TSS region transcription start site region 109553
Tssr103553 11 80858358 to 80858367 9 + TSS region transcription start site region 103553
Tssr103554 11 80858384 to 80858394 10 + TSS region transcription start site region 103554
Spaca3 11 80858389 to 80867814 9425 + protein coding gene sperm acrosome associated 3
Tssr103555 11 80858399 to 80858428 29 + TSS region transcription start site region 103555
D11Bhm128 11 80860056 to 80860152 96 DNA segment DNA segment, Chr 11, Boehm 128
Asic2 11 80880163 to 81968396 1088233 - protein coding gene acid-sensing (proton-gated) ion channel 2
Tssr3602 11 80978031 to 80978034 3 + TSS region transcription start site region 3602
Gm11416 11 81048115 to 81048768 653 + pseudogene predicted gene 11416
Gm11417 11 81072403 to 81083358 10955 + antisense lncRNA gene predicted gene 11417
Tssr109554 11 81075752 to 81075753 1 - TSS region transcription start site region 109554
Cpgi3391 11 81151588 to 81154151 2563 CpG island CpG island 3391
Tssr109555 11 81153603 to 81153642 39 - TSS region transcription start site region 109555
Tssr109556 11 81153645 to 81153662 17 - TSS region transcription start site region 109556
Tssr109557 11 81153705 to 81153719 14 - TSS region transcription start site region 109557
Gm42084 11 81243905 to 81252614 8709 - lncRNA gene predicted gene, 42084
D11Mit319 11 81261692 to 81261796 104 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 319
4930527B05Rik 11 81385013 to 81402491 17478 + antisense lncRNA gene RIKEN cDNA 4930527B05 gene
Cpgi3392 11 81572630 to 81573186 556 CpG island CpG island 3392
1700071K01Rik 11 81572655 to 81573473 818 - pseudogene RIKEN cDNA 1700071K01 gene
Cpgi3393 11 81573450 to 81573651 201 CpG island CpG island 3393
Tssr109558 11 81573516 to 81573542 26 - TSS region transcription start site region 109558
Tssr103556 11 81587353 to 81587364 11 + TSS region transcription start site region 103556
Gm11418 11 81587361 to 81593478 6117 + antisense lncRNA gene predicted gene 11418
Tssr109559 11 81593114 to 81593118 4 - TSS region transcription start site region 109559
D11Bhm129 11 81663480 to 81663695 215 DNA segment DNA segment, Chr 11, Boehm 129
D11Bhm30 11 81670807 to 81671002 195 DNA segment DNA segment, Chr 11, Boehm 30
D11Bhm131 11 81674905 to 81675012 107 DNA segment DNA segment, Chr 11, Boehm 131
Tssr3603 11 81675965 to 81675968 3 + TSS region transcription start site region 3603
D11Bhm132 11 81709358 to 81709523 165 DNA segment DNA segment, Chr 11, Boehm 132
D11Bhm133 11 81732748 to 81732893 145 DNA segment DNA segment, Chr 11, Boehm 133
D11Bhm134 11 81743632 to 81743741 109 DNA segment DNA segment, Chr 11, Boehm 134
D11Bhm135 11 81750818 to 81750953 135 DNA segment DNA segment, Chr 11, Boehm 135
D11Mit93 11 81764112 to 81764312 200 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 93
D11Bhm171 11 81775220 to 81775372 152 DNA segment DNA segment, Chr 11, Boehm 171
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
D11Mit33 11 81775249 to 81775376 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 33
D11Bhm172 11 81777430 to 81777535 105 DNA segment DNA segment, Chr 11, Boehm 172
D11Bhm174 11 81817221 to 81817359 138 DNA segment DNA segment, Chr 11, Boehm 174
D11Bhm136 11 81817934 to 81818026 92 DNA segment DNA segment, Chr 11, Boehm 136
D11Mit68.1 11 81818450 to 81818564 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 68.1
D11Mit68 11 81818482 to 81818705 223 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 68
D11Bhm175 11 81826445 to 81826659 214 DNA segment DNA segment, Chr 11, Boehm 175
D11Bhm173 11 81848954 to 81849193 239 DNA segment DNA segment, Chr 11, Boehm 173
Tssr109560 11 81858723 to 81858728 5 - TSS region transcription start site region 109560
5530401A14Rik 11 81860677 to 81894582 33905 + protein coding gene RIKEN cDNA 5530401A14 gene
D11Bhm176 11 81861315 to 81861500 185 DNA segment DNA segment, Chr 11, Boehm 176
Tssr109561 11 81867698 to 81867709 11 - TSS region transcription start site region 109561
Gm46254 11 81869054 to 81910498 41444 - lncRNA gene predicted gene, 46254
D11Bhm137 11 81873527 to 81873588 61 DNA segment DNA segment, Chr 11, Boehm 137
Tssr109562 11 81901934 to 81901938 4 - TSS region transcription start site region 109562
Ltpr6b 11 81939510 to 81939647 137 QTL Leishmania tropica response 6b
Ltpr6a 11 81939510 to 81939647 137 QTL Leishmania tropica response 6a
D11Mit37 11 81939510 to 81939647 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 37
Ltpr6 11 81939510 to 81939647 137 QTL Leishmania tropica response 6
Tssr109563 11 81968415 to 81968426 11 - TSS region transcription start site region 109563
Cpgi3394 11 81968461 to 81968938 477 CpG island CpG island 3394
D11Pas22 11 81970236 to 81970314 78 DNA segment DNA segment, Chr 11, Pasteur Institute 22
Gm31522 11 81980578 to 81986657 6079 - lincRNA gene predicted gene, 31522
Gm11419 11 81985406 to 81988769 3363 + lincRNA gene predicted gene 11419
Tssr103557 11 81985649 to 81985690 41 + TSS region transcription start site region 103557
D11Pas21 11 81988547 to 81988667 120 DNA segment DNA segment, Chr 11, Pasteur Institute 21
D11Pas20 11 81999272 to 81999429 157 DNA segment DNA segment, Chr 11, Pasteur Institute 20
D11Bhm138 11 82003325 to 82003380 55 DNA segment DNA segment, Chr 11, Boehm 138
Tssr109564 11 82006827 to 82006840 13 - TSS region transcription start site region 109564
Tssr109565 11 82006846 to 82006857 11 - TSS region transcription start site region 109565
D11Bhm139 11 82011815 to 82011897 82 DNA segment DNA segment, Chr 11, Boehm 139
Tssr103558 11 82023009 to 82023014 5 + TSS region transcription start site region 103558
Gm17268 11 82028224 to 82038562 10338 - protein coding gene predicted gene, 17268
Tssr103559 11 82035569 to 82035585 16 + TSS region transcription start site region 103559
Ccl2 11 82035577 to 82037452 1875 + protein coding gene chemokine (C-C motif) ligand 2
Tssr103560 11 82036188 to 82036190 2 + TSS region transcription start site region 103560
Tssr103561 11 82036480 to 82036498 18 + TSS region transcription start site region 103561
Tssr103562 11 82045537 to 82045558 21 + TSS region transcription start site region 103562
Tssr103563 11 82045705 to 82045721 16 + TSS region transcription start site region 103563
Ccl7 11 82045712 to 82047525 1813 + protein coding gene chemokine (C-C motif) ligand 7
Tssr103564 11 82046518 to 82046529 11 + TSS region transcription start site region 103564
Ccl11 11 82057832 to 82062955 5123 + protein coding gene chemokine (C-C motif) ligand 11
Tssr103565 11 82057845 to 82057856 11 + TSS region transcription start site region 103565
Tssr103566 11 82057885 to 82057888 3 + TSS region transcription start site region 103566
Tssr103567 11 82057914 to 82057929 15 + TSS region transcription start site region 103567
Gm38913 11 82066591 to 82071202 4611 - lncRNA gene predicted gene, 38913
D11Pas19 11 82068474 to 82068583 109 DNA segment DNA segment, Chr 11, Pasteur Institute 19