Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80435077-80575093

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psmd11 11 80428615 to 80473248 44633 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Tssr103532 11 80442698 to 80442703 5 + TSS region transcription start site region 103532
Tssr103533 11 80444901 to 80444905 4 + TSS region transcription start site region 103533
Tssr103534 11 80456955 to 80456981 26 + TSS region transcription start site region 103534
D11Bhm121 11 80465350 to 80465461 111 DNA segment DNA segment, Chr 11, Boehm 121
Tssr103535 11 80465501 to 80465523 22 + TSS region transcription start site region 103535
D230035N22Rik 11 80466238 to 80467905 1667 unclassified gene RIKEN cDNA D230035N22 gene
Tssr103536 11 80467856 to 80467890 34 + TSS region transcription start site region 103536
Tssr103537 11 80470818 to 80470829 11 + TSS region transcription start site region 103537
Tssr103538 11 80472380 to 80472417 37 + TSS region transcription start site region 103538
Tssr103539 11 80472611 to 80472621 10 + TSS region transcription start site region 103539
Tssr103540 11 80472659 to 80472676 17 + TSS region transcription start site region 103540
Tssr103541 11 80472683 to 80472686 3 + TSS region transcription start site region 103541
Cpgi3386 11 80476429 to 80478230 1801 CpG island CpG island 3386
Tssr103542 11 80477015 to 80477085 70 + TSS region transcription start site region 103542
Cdk5r1 11 80477046 to 80481179 4133 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Tssr103543 11 80477336 to 80477383 47 + TSS region transcription start site region 103543
Tssr103544 11 80477397 to 80477416 19 + TSS region transcription start site region 103544
Tssr103545 11 80480955 to 80480965 10 + TSS region transcription start site region 103545
Myo1d 11 80482126 to 80780025 297899 - protein coding gene myosin ID
Cpgi3387 11 80484129 to 80484365 236 CpG island CpG island 3387
Tssr103546 11 80495044 to 80495051 7 + TSS region transcription start site region 103546
Tssr3600 11 80495069 to 80495081 12 + TSS region transcription start site region 3600
Tssr3601 11 80504687 to 80504691 4 + TSS region transcription start site region 3601
Tssr109544 11 80505077 to 80505093 16 - TSS region transcription start site region 109544
Tssr103547 11 80505254 to 80505276 22 + TSS region transcription start site region 103547
Tssr103548 11 80505313 to 80505331 18 + TSS region transcription start site region 103548
C030013C21Rik 11 80507410 to 80509106 1696 - sense intronic lncRNA gene RIKEN cDNA C030013C21 gene
D11Bhm122 11 80509021 to 80509124 103 DNA segment DNA segment, Chr 11, Boehm 122
Gm31109 11 80509284 to 80511281 1997 + lncRNA gene predicted gene, 31109
Tssr103549 11 80509314 to 80509331 17 + TSS region transcription start site region 103549
Tssr103550 11 80509797 to 80509798 1 + TSS region transcription start site region 103550
D11Mit118 11 80574588 to 80574758 170 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 118