Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80193516-82953542

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338 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr15 11 63428581 to 81939647 18511066 QTL leishmaniasis resistance 15
Opfaq3 11 73846715 to 82178599 8331884 QTL open field activity QTL 3
Ltxs3 11 77683047 to 80855532 3172485 QTL lethal factor toxin susceptibility 3
Rnf135 11 80183872 to 80199753 15881 + protein coding gene ring finger protein 135
Cpgi3380 11 80208711 to 80209753 1042 CpG island CpG island 3380
Tssr103511 11 80209019 to 80209057 38 + TSS region transcription start site region 103511
Rhot1 11 80209032 to 80267907 58875 + protein coding gene ras homolog family member T1
Tssr103512 11 80209066 to 80209164 98 + TSS region transcription start site region 103512
Tssr103513 11 80209714 to 80209718 4 + TSS region transcription start site region 103513
Tssr103514 11 80209902 to 80209905 3 + TSS region transcription start site region 103514
D11Bhm115 11 80254440 to 80254526 86 DNA segment DNA segment, Chr 11, Boehm 115
D11Bhm114 11 80254476 to 80254566 90 DNA segment DNA segment, Chr 11, Boehm 114
D11Bhm116 11 80255074 to 80255144 70 DNA segment DNA segment, Chr 11, Boehm 116
D11Bhm117 11 80276658 to 80276876 218 DNA segment DNA segment, Chr 11, Boehm 117
D11Bhm118 11 80295340 to 80295565 225 DNA segment DNA segment, Chr 11, Boehm 118
Cpgi3381 11 80300441 to 80302075 1634 CpG island CpG island 3381
Tssr103515 11 80300866 to 80300889 23 + TSS region transcription start site region 103515
Rhbdl3 11 80300912 to 80355955 55043 + protein coding gene rhomboid like 3
5730455P16Rik 11 80360492 to 80378034 17542 - protein coding gene RIKEN cDNA 5730455P16 gene
D11Bhm119 11 80363759 to 80363832 73 DNA segment DNA segment, Chr 11, Boehm 119
D11Bhm120 11 80376137 to 80376218 81 DNA segment DNA segment, Chr 11, Boehm 120
Cpgi3382 11 80377576 to 80378126 550 CpG island CpG island 3382
Tssr109541 11 80377975 to 80378025 50 - TSS region transcription start site region 109541
Cpgi3383 11 80383101 to 80383778 677 CpG island CpG island 3383
Tssr109542 11 80383150 to 80383182 32 - TSS region transcription start site region 109542
Zfp207 11 80383279 to 80405733 22454 + protein coding gene zinc finger protein 207
Tssr103516 11 80383299 to 80383304 5 + TSS region transcription start site region 103516
Tssr103517 11 80383309 to 80383336 27 + TSS region transcription start site region 103517
Tssr103518 11 80383398 to 80383415 17 + TSS region transcription start site region 103518
Tssr103519 11 80384042 to 80384048 6 + TSS region transcription start site region 103519
Tssr103520 11 80386518 to 80386525 7 + TSS region transcription start site region 103520
Tssr103521 11 80389074 to 80389092 18 + TSS region transcription start site region 103521
Tssr103522 11 80389416 to 80389419 3 + TSS region transcription start site region 103522
Tssr103523 11 80391828 to 80391851 23 + TSS region transcription start site region 103523
Tssr103524 11 80391929 to 80391948 19 + TSS region transcription start site region 103524
Tssr103525 11 80394275 to 80394413 138 + TSS region transcription start site region 103525
Tssr103526 11 80395535 to 80395548 13 + TSS region transcription start site region 103526
Tssr103527 11 80399628 to 80399634 6 + TSS region transcription start site region 103527
Tssr103528 11 80403345 to 80403349 4 + TSS region transcription start site region 103528
Cpgi3384 11 80428373 to 80429435 1062 CpG island CpG island 3384
Tssr103529 11 80428598 to 80428656 58 + TSS region transcription start site region 103529
Psmd11 11 80428615 to 80473248 44633 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Tssr109543 11 80429305 to 80429313 8 - TSS region transcription start site region 109543
Tssr103530 11 80429732 to 80429743 11 + TSS region transcription start site region 103530
Tssr103531 11 80431466 to 80431476 10 + TSS region transcription start site region 103531
Tssr103532 11 80442698 to 80442703 5 + TSS region transcription start site region 103532
Tssr103533 11 80444901 to 80444905 4 + TSS region transcription start site region 103533
Tssr103534 11 80456955 to 80456981 26 + TSS region transcription start site region 103534
D11Bhm121 11 80465350 to 80465461 111 DNA segment DNA segment, Chr 11, Boehm 121
Tssr103535 11 80465501 to 80465523 22 + TSS region transcription start site region 103535
D230035N22Rik 11 80466238 to 80467905 1667 unclassified gene RIKEN cDNA D230035N22 gene
Tssr103536 11 80467856 to 80467890 34 + TSS region transcription start site region 103536
Tssr103537 11 80470818 to 80470829 11 + TSS region transcription start site region 103537
Tssr103538 11 80472380 to 80472417 37 + TSS region transcription start site region 103538
Tssr103539 11 80472611 to 80472621 10 + TSS region transcription start site region 103539
Tssr103540 11 80472659 to 80472676 17 + TSS region transcription start site region 103540
Tssr103541 11 80472683 to 80472686 3 + TSS region transcription start site region 103541
Cpgi3386 11 80476429 to 80478230 1801 CpG island CpG island 3386
Tssr103542 11 80477015 to 80477085 70 + TSS region transcription start site region 103542
Cdk5r1 11 80477046 to 80481179 4133 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Tssr103543 11 80477336 to 80477383 47 + TSS region transcription start site region 103543
Tssr103544 11 80477397 to 80477416 19 + TSS region transcription start site region 103544
Tssr103545 11 80480955 to 80480965 10 + TSS region transcription start site region 103545
Myo1d 11 80482126 to 80780025 297899 - protein coding gene myosin ID
Cpgi3387 11 80484129 to 80484365 236 CpG island CpG island 3387
Tssr103546 11 80495044 to 80495051 7 + TSS region transcription start site region 103546
Tssr3600 11 80495069 to 80495081 12 + TSS region transcription start site region 3600
Tssr3601 11 80504687 to 80504691 4 + TSS region transcription start site region 3601
Tssr109544 11 80505077 to 80505093 16 - TSS region transcription start site region 109544
Tssr103547 11 80505254 to 80505276 22 + TSS region transcription start site region 103547
Tssr103548 11 80505313 to 80505331 18 + TSS region transcription start site region 103548
C030013C21Rik 11 80507410 to 80509106 1696 - sense intronic lncRNA gene RIKEN cDNA C030013C21 gene
D11Bhm122 11 80509021 to 80509124 103 DNA segment DNA segment, Chr 11, Boehm 122
Gm31109 11 80509284 to 80511281 1997 + lncRNA gene predicted gene, 31109
Tssr103549 11 80509314 to 80509331 17 + TSS region transcription start site region 103549
Tssr103550 11 80509797 to 80509798 1 + TSS region transcription start site region 103550
D11Mit118 11 80574588 to 80574758 170 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 118
Cpgi3388 11 80603161 to 80603369 208 CpG island CpG island 3388
Gm38907 11 80617865 to 80676041 58176 + lncRNA gene predicted gene, 38907
D11Bhm123 11 80659301 to 80659490 189 DNA segment DNA segment, Chr 11, Boehm 123
Gm31042 11 80722910 to 80728012 5102 + lncRNA gene predicted gene, 31042
D11Bhm124 11 80747245 to 80747438 193 DNA segment DNA segment, Chr 11, Boehm 124
Cpgi3389 11 80779325 to 80780558 1233 CpG island CpG island 3389
Tssr109545 11 80779799 to 80779841 42 - TSS region transcription start site region 109545
Tssr109546 11 80779918 to 80779929 11 - TSS region transcription start site region 109546
Tssr109547 11 80779967 to 80779984 17 - TSS region transcription start site region 109547
Tssr109548 11 80779989 to 80780033 44 - TSS region transcription start site region 109548
D11Bhm125 11 80782218 to 80782372 154 DNA segment DNA segment, Chr 11, Boehm 125
D11Bhm126 11 80787232 to 80787296 64 DNA segment DNA segment, Chr 11, Boehm 126
Tssr109549 11 80789863 to 80789864 1 - TSS region transcription start site region 109549
D11Mit92 11 80804901 to 80805034 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 92
Gm31228 11 80805815 to 80815685 9870 - lncRNA gene predicted gene, 31228
Cpgi3390 11 80810003 to 80810811 808 CpG island CpG island 3390
Tssr103551 11 80810357 to 80810404 47 + TSS region transcription start site region 103551
Tmem98 11 80810415 to 80822033 11618 + protein coding gene transmembrane protein 98
Gm45953 11 80815706 to 80821184 5478 - lncRNA gene predicted gene, 45953
D11Bhm168 11 80819243 to 80819333 90 DNA segment DNA segment, Chr 11, Boehm 168
Tssr103552 11 80821232 to 80821243 11 + TSS region transcription start site region 103552
Gm11207 11 80822780 to 80823193 413 - pseudogene predicted gene 11207
D11Bhm127 11 80823210 to 80823296 86 DNA segment DNA segment, Chr 11, Boehm 127
4930507D10Rik 11 80850381 to 80858300 7919 - antisense lncRNA gene RIKEN cDNA 4930507D10 gene
D11Bhm169 11 80855289 to 80855532 243 DNA segment DNA segment, Chr 11, Boehm 169
Tssr109550 11 80858210 to 80858213 3 - TSS region transcription start site region 109550
Tssr109551 11 80858277 to 80858287 10 - TSS region transcription start site region 109551
Tssr109552 11 80858290 to 80858304 14 - TSS region transcription start site region 109552
Tssr109553 11 80858312 to 80858321 9 - TSS region transcription start site region 109553
Tssr103553 11 80858358 to 80858367 9 + TSS region transcription start site region 103553
Tssr103554 11 80858384 to 80858394 10 + TSS region transcription start site region 103554
Spaca3 11 80858389 to 80867814 9425 + protein coding gene sperm acrosome associated 3
Tssr103555 11 80858399 to 80858428 29 + TSS region transcription start site region 103555
D11Bhm128 11 80860056 to 80860152 96 DNA segment DNA segment, Chr 11, Boehm 128
Asic2 11 80880163 to 81968396 1088233 - protein coding gene acid-sensing (proton-gated) ion channel 2
Tssr3602 11 80978031 to 80978034 3 + TSS region transcription start site region 3602
Gm11416 11 81048115 to 81048768 653 + pseudogene predicted gene 11416
Gm11417 11 81072403 to 81083358 10955 + antisense lncRNA gene predicted gene 11417
Tssr109554 11 81075752 to 81075753 1 - TSS region transcription start site region 109554
Cpgi3391 11 81151588 to 81154151 2563 CpG island CpG island 3391
Tssr109555 11 81153603 to 81153642 39 - TSS region transcription start site region 109555
Tssr109556 11 81153645 to 81153662 17 - TSS region transcription start site region 109556
Tssr109557 11 81153705 to 81153719 14 - TSS region transcription start site region 109557
Gm42084 11 81243905 to 81252614 8709 - lncRNA gene predicted gene, 42084
D11Mit319 11 81261692 to 81261796 104 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 319
4930527B05Rik 11 81385013 to 81402491 17478 + antisense lncRNA gene RIKEN cDNA 4930527B05 gene
Cpgi3392 11 81572630 to 81573186 556 CpG island CpG island 3392
1700071K01Rik 11 81572655 to 81573473 818 - pseudogene RIKEN cDNA 1700071K01 gene
Cpgi3393 11 81573450 to 81573651 201 CpG island CpG island 3393
Tssr109558 11 81573516 to 81573542 26 - TSS region transcription start site region 109558
Tssr103556 11 81587353 to 81587364 11 + TSS region transcription start site region 103556
Gm11418 11 81587361 to 81593478 6117 + antisense lncRNA gene predicted gene 11418
Tssr109559 11 81593114 to 81593118 4 - TSS region transcription start site region 109559
D11Bhm129 11 81663480 to 81663695 215 DNA segment DNA segment, Chr 11, Boehm 129
D11Bhm30 11 81670807 to 81671002 195 DNA segment DNA segment, Chr 11, Boehm 30
D11Bhm131 11 81674905 to 81675012 107 DNA segment DNA segment, Chr 11, Boehm 131
Tssr3603 11 81675965 to 81675968 3 + TSS region transcription start site region 3603
D11Bhm132 11 81709358 to 81709523 165 DNA segment DNA segment, Chr 11, Boehm 132
D11Bhm133 11 81732748 to 81732893 145 DNA segment DNA segment, Chr 11, Boehm 133
D11Bhm134 11 81743632 to 81743741 109 DNA segment DNA segment, Chr 11, Boehm 134
D11Bhm135 11 81750818 to 81750953 135 DNA segment DNA segment, Chr 11, Boehm 135
D11Mit93 11 81764112 to 81764312 200 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 93
D11Bhm171 11 81775220 to 81775372 152 DNA segment DNA segment, Chr 11, Boehm 171
D11Mit33 11 81775249 to 81775376 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 33
Alo1 11 81775249 to 97007000 15231751 heritable phenotypic marker alopecia 1
D11Bhm172 11 81777430 to 81777535 105 DNA segment DNA segment, Chr 11, Boehm 172
D11Bhm174 11 81817221 to 81817359 138 DNA segment DNA segment, Chr 11, Boehm 174
D11Bhm136 11 81817934 to 81818026 92 DNA segment DNA segment, Chr 11, Boehm 136
D11Mit68.1 11 81818450 to 81818564 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 68.1
D11Mit68 11 81818482 to 81818705 223 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 68
D11Bhm175 11 81826445 to 81826659 214 DNA segment DNA segment, Chr 11, Boehm 175
D11Bhm173 11 81848954 to 81849193 239 DNA segment DNA segment, Chr 11, Boehm 173
Tssr109560 11 81858723 to 81858728 5 - TSS region transcription start site region 109560
5530401A14Rik 11 81860677 to 81894582 33905 + protein coding gene RIKEN cDNA 5530401A14 gene
D11Bhm176 11 81861315 to 81861500 185 DNA segment DNA segment, Chr 11, Boehm 176
Tssr109561 11 81867698 to 81867709 11 - TSS region transcription start site region 109561
Gm46254 11 81869054 to 81910498 41444 - lncRNA gene predicted gene, 46254
D11Bhm137 11 81873527 to 81873588 61 DNA segment DNA segment, Chr 11, Boehm 137
Tssr109562 11 81901934 to 81901938 4 - TSS region transcription start site region 109562
Ltpr6a 11 81939510 to 81939647 137 QTL Leishmania tropica response 6a
Ltpr6 11 81939510 to 81939647 137 QTL Leishmania tropica response 6
Ltpr6b 11 81939510 to 81939647 137 QTL Leishmania tropica response 6b
D11Mit37 11 81939510 to 81939647 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 37
Tssr109563 11 81968415 to 81968426 11 - TSS region transcription start site region 109563
Cpgi3394 11 81968461 to 81968938 477 CpG island CpG island 3394
D11Pas22 11 81970236 to 81970314 78 DNA segment DNA segment, Chr 11, Pasteur Institute 22
Gm31522 11 81980578 to 81986657 6079 - lincRNA gene predicted gene, 31522
Gm11419 11 81985406 to 81988769 3363 + lincRNA gene predicted gene 11419
Tssr103557 11 81985649 to 81985690 41 + TSS region transcription start site region 103557
D11Pas21 11 81988547 to 81988667 120 DNA segment DNA segment, Chr 11, Pasteur Institute 21
D11Pas20 11 81999272 to 81999429 157 DNA segment DNA segment, Chr 11, Pasteur Institute 20
D11Bhm138 11 82003325 to 82003380 55 DNA segment DNA segment, Chr 11, Boehm 138
Tssr109564 11 82006827 to 82006840 13 - TSS region transcription start site region 109564
Tssr109565 11 82006846 to 82006857 11 - TSS region transcription start site region 109565
D11Bhm139 11 82011815 to 82011897 82 DNA segment DNA segment, Chr 11, Boehm 139
Tssr103558 11 82023009 to 82023014 5 + TSS region transcription start site region 103558
Gm17268 11 82028224 to 82038562 10338 - protein coding gene predicted gene, 17268
Tssr103559 11 82035569 to 82035585 16 + TSS region transcription start site region 103559
Ccl2 11 82035577 to 82037452 1875 + protein coding gene chemokine (C-C motif) ligand 2
Tssr103560 11 82036188 to 82036190 2 + TSS region transcription start site region 103560
Tssr103561 11 82036480 to 82036498 18 + TSS region transcription start site region 103561
Tssr103562 11 82045537 to 82045558 21 + TSS region transcription start site region 103562
Tssr103563 11 82045705 to 82045721 16 + TSS region transcription start site region 103563
Ccl7 11 82045712 to 82047525 1813 + protein coding gene chemokine (C-C motif) ligand 7
Tssr103564 11 82046518 to 82046529 11 + TSS region transcription start site region 103564
Ccl11 11 82057832 to 82062955 5123 + protein coding gene chemokine (C-C motif) ligand 11
Tssr103565 11 82057845 to 82057856 11 + TSS region transcription start site region 103565
Tssr103566 11 82057885 to 82057888 3 + TSS region transcription start site region 103566
Tssr103567 11 82057914 to 82057929 15 + TSS region transcription start site region 103567
Gm38913 11 82066591 to 82071202 4611 - lncRNA gene predicted gene, 38913
D11Pas19 11 82068474 to 82068583 109 DNA segment DNA segment, Chr 11, Pasteur Institute 19
Tssr103568 11 82101818 to 82101829 11 + TSS region transcription start site region 103568
Tssr103569 11 82101836 to 82101849 13 + TSS region transcription start site region 103569
Ccl12 11 82101845 to 82103399 1554 + protein coding gene chemokine (C-C motif) ligand 12
Tssr103570 11 82115180 to 82115186 6 + TSS region transcription start site region 103570
Ccl8 11 82115185 to 82116799 1614 + protein coding gene chemokine (C-C motif) ligand 8
Tssr103571 11 82167092 to 82167114 22 + TSS region transcription start site region 103571
D11Bhm140 11 82168642 to 82168696 54 DNA segment DNA segment, Chr 11, Boehm 140
Ccl1 11 82176666 to 82179812 3146 - protein coding gene chemokine (C-C motif) ligand 1
Tssr109566 11 82179808 to 82179815 7 - TSS region transcription start site region 109566
Tssr109567 11 82179896 to 82179918 22 - TSS region transcription start site region 109567
Tssr103572 11 82180115 to 82180152 37 + TSS region transcription start site region 103572
Tssr103573 11 82215149 to 82215162 13 + TSS region transcription start site region 103573