Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80087698-80797703

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3376 11 80089270 to 80089986 716 CpG island CpG island 3376
Tssr103478 11 80089385 to 80089417 32 + TSS region transcription start site region 103478
Atad5 11 80089400 to 80135794 46394 + protein coding gene ATPase family, AAA domain containing 5
Tssr103479 11 80089426 to 80089469 43 + TSS region transcription start site region 103479
Tssr103480 11 80136352 to 80136365 13 + TSS region transcription start site region 103480
Tssr103481 11 80136575 to 80136584 9 + TSS region transcription start site region 103481
Tefm 11 80136678 to 80142175 5497 - protein coding gene transcription elongation factor, mitochondrial
Tssr103482 11 80137953 to 80137983 30 + TSS region transcription start site region 103482
Tssr109536 11 80139942 to 80139969 27 - TSS region transcription start site region 109536
Cpgi3377 11 80141799 to 80142318 519 CpG island CpG island 3377
Tssr103483 11 80141811 to 80141855 44 + TSS region transcription start site region 103483
Tssr109537 11 80142099 to 80142112 13 - TSS region transcription start site region 109537
Tssr109538 11 80142123 to 80142162 39 - TSS region transcription start site region 109538
Tssr109539 11 80142164 to 80142177 13 - TSS region transcription start site region 109539
Tssr109540 11 80142998 to 80143013 15 - TSS region transcription start site region 109540
Cpgi3378 11 80153864 to 80154906 1042 CpG island CpG island 3378
Tssr103484 11 80154071 to 80154082 11 + TSS region transcription start site region 103484
Tssr103485 11 80154083 to 80154090 7 + TSS region transcription start site region 103485
Tssr103486 11 80154103 to 80154137 34 + TSS region transcription start site region 103486
Adap2 11 80154105 to 80178958 24853 + protein coding gene ArfGAP with dual PH domains 2
Tssr103487 11 80154555 to 80154569 14 + TSS region transcription start site region 103487
Tssr103488 11 80154596 to 80154616 20 + TSS region transcription start site region 103488
Adap2os 11 80158861 to 80177629 18768 - antisense lncRNA gene ArfGAP with dual PH domains 2, opposite strand
Tssr103489 11 80161340 to 80161353 13 + TSS region transcription start site region 103489
Tssr103490 11 80165670 to 80165679 9 + TSS region transcription start site region 103490
Tssr103491 11 80171483 to 80171488 5 + TSS region transcription start site region 103491
Tssr103492 11 80173403 to 80173423 20 + TSS region transcription start site region 103492
Tssr103493 11 80177312 to 80177319 7 + TSS region transcription start site region 103493
Tssr103494 11 80177377 to 80177381 4 + TSS region transcription start site region 103494
Tssr103495 11 80177444 to 80177448 4 + TSS region transcription start site region 103495
Tssr3598 11 80177467 to 80177491 24 + TSS region transcription start site region 3598
Tssr103496 11 80177932 to 80177943 11 + TSS region transcription start site region 103496
Tssr103497 11 80177967 to 80177993 26 + TSS region transcription start site region 103497
Tssr103498 11 80178020 to 80178045 25 + TSS region transcription start site region 103498
Tssr103499 11 80178196 to 80178227 31 + TSS region transcription start site region 103499
Tssr103500 11 80178273 to 80178284 11 + TSS region transcription start site region 103500
Tssr103501 11 80178550 to 80178567 17 + TSS region transcription start site region 103501
Tssr103502 11 80178656 to 80178665 9 + TSS region transcription start site region 103502
Tssr103503 11 80178709 to 80178724 15 + TSS region transcription start site region 103503
Tssr103504 11 80178755 to 80178761 6 + TSS region transcription start site region 103504
Tssr103505 11 80178851 to 80178858 7 + TSS region transcription start site region 103505
Tssr103506 11 80179158 to 80179174 16 + TSS region transcription start site region 103506
Tssr103507 11 80179322 to 80179335 13 + TSS region transcription start site region 103507
Tssr103508 11 80179353 to 80179368 15 + TSS region transcription start site region 103508
D11Bhm113 11 80180987 to 80181073 86 DNA segment DNA segment, Chr 11, Boehm 113
Cpgi3379 11 80183761 to 80184285 524 CpG island CpG island 3379
Tssr103509 11 80183861 to 80183882 21 + TSS region transcription start site region 103509
Rnf135 11 80183872 to 80199753 15881 + protein coding gene ring finger protein 135
Tssr103510 11 80183886 to 80183905 19 + TSS region transcription start site region 103510
Tssr3599 11 80183907 to 80183918 11 + TSS region transcription start site region 3599
Cpgi3380 11 80208711 to 80209753 1042 CpG island CpG island 3380
Tssr103511 11 80209019 to 80209057 38 + TSS region transcription start site region 103511
Rhot1 11 80209032 to 80267907 58875 + protein coding gene ras homolog family member T1
Tssr103512 11 80209066 to 80209164 98 + TSS region transcription start site region 103512
Tssr103513 11 80209714 to 80209718 4 + TSS region transcription start site region 103513
Tssr103514 11 80209902 to 80209905 3 + TSS region transcription start site region 103514
D11Bhm115 11 80254440 to 80254526 86 DNA segment DNA segment, Chr 11, Boehm 115
D11Bhm114 11 80254476 to 80254566 90 DNA segment DNA segment, Chr 11, Boehm 114
D11Bhm116 11 80255074 to 80255144 70 DNA segment DNA segment, Chr 11, Boehm 116
D11Bhm117 11 80276658 to 80276876 218 DNA segment DNA segment, Chr 11, Boehm 117
D11Bhm118 11 80295340 to 80295565 225 DNA segment DNA segment, Chr 11, Boehm 118
Cpgi3381 11 80300441 to 80302075 1634 CpG island CpG island 3381
Tssr103515 11 80300866 to 80300889 23 + TSS region transcription start site region 103515
Rhbdl3 11 80300912 to 80355955 55043 + protein coding gene rhomboid like 3
5730455P16Rik 11 80360492 to 80378034 17542 - protein coding gene RIKEN cDNA 5730455P16 gene
D11Bhm119 11 80363759 to 80363832 73 DNA segment DNA segment, Chr 11, Boehm 119
D11Bhm120 11 80376137 to 80376218 81 DNA segment DNA segment, Chr 11, Boehm 120
Cpgi3382 11 80377576 to 80378126 550 CpG island CpG island 3382
Tssr109541 11 80377975 to 80378025 50 - TSS region transcription start site region 109541
Cpgi3383 11 80383101 to 80383778 677 CpG island CpG island 3383
Tssr109542 11 80383150 to 80383182 32 - TSS region transcription start site region 109542
Zfp207 11 80383279 to 80405733 22454 + protein coding gene zinc finger protein 207
Tssr103516 11 80383299 to 80383304 5 + TSS region transcription start site region 103516
Tssr103517 11 80383309 to 80383336 27 + TSS region transcription start site region 103517
Tssr103518 11 80383398 to 80383415 17 + TSS region transcription start site region 103518
Tssr103519 11 80384042 to 80384048 6 + TSS region transcription start site region 103519
Tssr103520 11 80386518 to 80386525 7 + TSS region transcription start site region 103520
Tssr103521 11 80389074 to 80389092 18 + TSS region transcription start site region 103521
Tssr103522 11 80389416 to 80389419 3 + TSS region transcription start site region 103522
Tssr103523 11 80391828 to 80391851 23 + TSS region transcription start site region 103523
Tssr103524 11 80391929 to 80391948 19 + TSS region transcription start site region 103524
Tssr103525 11 80394275 to 80394413 138 + TSS region transcription start site region 103525
Tssr103526 11 80395535 to 80395548 13 + TSS region transcription start site region 103526
Tssr103527 11 80399628 to 80399634 6 + TSS region transcription start site region 103527
Tssr103528 11 80403345 to 80403349 4 + TSS region transcription start site region 103528
Cpgi3384 11 80428373 to 80429435 1062 CpG island CpG island 3384
Tssr103529 11 80428598 to 80428656 58 + TSS region transcription start site region 103529
Psmd11 11 80428615 to 80473248 44633 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Tssr109543 11 80429305 to 80429313 8 - TSS region transcription start site region 109543
Tssr103530 11 80429732 to 80429743 11 + TSS region transcription start site region 103530
Tssr103531 11 80431466 to 80431476 10 + TSS region transcription start site region 103531
Tssr103532 11 80442698 to 80442703 5 + TSS region transcription start site region 103532
Tssr103533 11 80444901 to 80444905 4 + TSS region transcription start site region 103533
Tssr103534 11 80456955 to 80456981 26 + TSS region transcription start site region 103534
D11Bhm121 11 80465350 to 80465461 111 DNA segment DNA segment, Chr 11, Boehm 121
Tssr103535 11 80465501 to 80465523 22 + TSS region transcription start site region 103535
D230035N22Rik 11 80466238 to 80467905 1667 unclassified gene RIKEN cDNA D230035N22 gene
Tssr103536 11 80467856 to 80467890 34 + TSS region transcription start site region 103536
Tssr103537 11 80470818 to 80470829 11 + TSS region transcription start site region 103537
Tssr103538 11 80472380 to 80472417 37 + TSS region transcription start site region 103538
Tssr103539 11 80472611 to 80472621 10 + TSS region transcription start site region 103539
Tssr103540 11 80472659 to 80472676 17 + TSS region transcription start site region 103540
Tssr103541 11 80472683 to 80472686 3 + TSS region transcription start site region 103541
Cpgi3386 11 80476429 to 80478230 1801 CpG island CpG island 3386
Tssr103542 11 80477015 to 80477085 70 + TSS region transcription start site region 103542
Cdk5r1 11 80477046 to 80481179 4133 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Tssr103543 11 80477336 to 80477383 47 + TSS region transcription start site region 103543
Tssr103544 11 80477397 to 80477416 19 + TSS region transcription start site region 103544
Tssr103545 11 80480955 to 80480965 10 + TSS region transcription start site region 103545
Myo1d 11 80482126 to 80780025 297899 - protein coding gene myosin ID
Cpgi3387 11 80484129 to 80484365 236 CpG island CpG island 3387
Tssr103546 11 80495044 to 80495051 7 + TSS region transcription start site region 103546
Tssr3600 11 80495069 to 80495081 12 + TSS region transcription start site region 3600
Tssr3601 11 80504687 to 80504691 4 + TSS region transcription start site region 3601
Tssr109544 11 80505077 to 80505093 16 - TSS region transcription start site region 109544
Tssr103547 11 80505254 to 80505276 22 + TSS region transcription start site region 103547
Tssr103548 11 80505313 to 80505331 18 + TSS region transcription start site region 103548
C030013C21Rik 11 80507410 to 80509106 1696 - sense intronic lncRNA gene RIKEN cDNA C030013C21 gene
D11Bhm122 11 80509021 to 80509124 103 DNA segment DNA segment, Chr 11, Boehm 122
Gm31109 11 80509284 to 80511281 1997 + lncRNA gene predicted gene, 31109
Tssr103549 11 80509314 to 80509331 17 + TSS region transcription start site region 103549
Tssr103550 11 80509797 to 80509798 1 + TSS region transcription start site region 103550
D11Mit118 11 80574588 to 80574758 170 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 118
Cpgi3388 11 80603161 to 80603369 208 CpG island CpG island 3388
Gm38907 11 80617865 to 80676041 58176 + lncRNA gene predicted gene, 38907
D11Bhm123 11 80659301 to 80659490 189 DNA segment DNA segment, Chr 11, Boehm 123
Gm31042 11 80722910 to 80728012 5102 + lncRNA gene predicted gene, 31042
D11Bhm124 11 80747245 to 80747438 193 DNA segment DNA segment, Chr 11, Boehm 124
Cpgi3389 11 80779325 to 80780558 1233 CpG island CpG island 3389
Tssr109545 11 80779799 to 80779841 42 - TSS region transcription start site region 109545
Tssr109546 11 80779918 to 80779929 11 - TSS region transcription start site region 109546
Tssr109547 11 80779967 to 80779984 17 - TSS region transcription start site region 109547
Tssr109548 11 80779989 to 80780033 44 - TSS region transcription start site region 109548
D11Bhm125 11 80782218 to 80782372 154 DNA segment DNA segment, Chr 11, Boehm 125
D11Bhm126 11 80787232 to 80787296 64 DNA segment DNA segment, Chr 11, Boehm 126
Tssr109549 11 80789863 to 80789864 1 - TSS region transcription start site region 109549