Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:79598385-79861743

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab11fip4 11 79591212 to 79698023 106811 + protein coding gene RAB11 family interacting protein 4 (class II)
Rab11fip4os1 11 79607079 to 79623163 16084 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 1
Tssr109522 11 79623120 to 79623125 5 - TSS region transcription start site region 109522
Gm25867 11 79635311 to 79635413 102 - snRNA gene predicted gene, 25867
Gm30718 11 79638637 to 79646834 8197 - lncRNA gene predicted gene, 30718
Gm24887 11 79639021 to 79639128 107 - snRNA gene predicted gene, 24887
Cpgi3368 11 79652962 to 79653404 442 CpG island CpG island 3368
Tssr103456 11 79653132 to 79653145 13 + TSS region transcription start site region 103456
Tssr103457 11 79653181 to 79653186 5 + TSS region transcription start site region 103457
Cpgi3369 11 79660320 to 79661370 1050 CpG island CpG island 3369
Tssr103458 11 79660532 to 79660561 29 + TSS region transcription start site region 103458
Tssr103459 11 79660572 to 79660618 46 + TSS region transcription start site region 103459
Tssr103460 11 79660637 to 79660648 11 + TSS region transcription start site region 103460
Tssr103461 11 79660674 to 79660690 16 + TSS region transcription start site region 103461
Tssr103462 11 79660704 to 79660727 23 + TSS region transcription start site region 103462
Tssr103463 11 79660741 to 79660752 11 + TSS region transcription start site region 103463
Rab11fip4os2 11 79670373 to 79675086 4713 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 2
D11Bhm108 11 79671579 to 79671658 79 DNA segment DNA segment, Chr 11, Boehm 108
Tssr103464 11 79673931 to 79673944 13 + TSS region transcription start site region 103464
Tssr109523 11 79675125 to 79675130 5 - TSS region transcription start site region 109523
Tssr103465 11 79694906 to 79694910 4 + TSS region transcription start site region 103465
Cpgi3370 11 79703806 to 79705094 1288 CpG island CpG island 3370
B230207N12Rik 11 79703875 to 79704449 574 unclassified gene RIKEN cDNA B230207N12 gene
Tssr109524 11 79704470 to 79704517 47 - TSS region transcription start site region 109524
Gm11205 11 79704570 to 79705014 444 + lincRNA gene predicted gene 11205
n-TTcgt3 11 79704650 to 79704721 71 + tRNA gene nuclear encoded tRNA threonine 3 (anticodon CGT)
Cpgi3371 11 79710696 to 79712387 1691 CpG island CpG island 3371
Tssr103466 11 79711288 to 79711311 23 + TSS region transcription start site region 103466
Tssr103467 11 79711328 to 79711358 30 + TSS region transcription start site region 103467
Tssr103468 11 79711359 to 79711375 16 + TSS region transcription start site region 103468
Mir193a 11 79711969 to 79712034 65 + miRNA gene microRNA 193a
Tssr103469 11 79715899 to 79715903 4 + TSS region transcription start site region 103469
Mir365-2 11 79726400 to 79726511 111 + miRNA gene microRNA 365-2
Gm46253 11 79728385 to 79731743 3358 + lncRNA gene predicted gene, 46253
D11Bhm187 11 79728989 to 79729052 63 DNA segment DNA segment, Chr 11, Boehm 187
9130204K15Rik 11 79745817 to 79796728 50911 - lincRNA gene RIKEN cDNA 9130204K15 gene
D11Bhm109 11 79753710 to 79753887 177 DNA segment DNA segment, Chr 11, Boehm 109
D11Mit262 11 79765904 to 79766006 102 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 262