Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:79583409-80543428

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205 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd1n 11 45275046 to 80087498 34812452 QTL non-insulin-dependent diabetes mellitus 1 in NSY
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
Cpgi3367 11 79590480 to 79592010 1530 CpG island CpG island 3367
Tssr103455 11 79591120 to 79591224 104 + TSS region transcription start site region 103455
Rab11fip4 11 79591212 to 79698023 106811 + protein coding gene RAB11 family interacting protein 4 (class II)
Gm23293 11 79595165 to 79595268 103 + snRNA gene predicted gene, 23293
Rab11fip4os1 11 79607079 to 79623163 16084 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 1
Tssr109522 11 79623120 to 79623125 5 - TSS region transcription start site region 109522
Gm25867 11 79635311 to 79635413 102 - snRNA gene predicted gene, 25867
Gm30718 11 79638637 to 79646834 8197 - lncRNA gene predicted gene, 30718
Gm24887 11 79639021 to 79639128 107 - snRNA gene predicted gene, 24887
Cpgi3368 11 79652962 to 79653404 442 CpG island CpG island 3368
Tssr103456 11 79653132 to 79653145 13 + TSS region transcription start site region 103456
Tssr103457 11 79653181 to 79653186 5 + TSS region transcription start site region 103457
Cpgi3369 11 79660320 to 79661370 1050 CpG island CpG island 3369
Tssr103458 11 79660532 to 79660561 29 + TSS region transcription start site region 103458
Tssr103459 11 79660572 to 79660618 46 + TSS region transcription start site region 103459
Tssr103460 11 79660637 to 79660648 11 + TSS region transcription start site region 103460
Tssr103461 11 79660674 to 79660690 16 + TSS region transcription start site region 103461
Tssr103462 11 79660704 to 79660727 23 + TSS region transcription start site region 103462
Tssr103463 11 79660741 to 79660752 11 + TSS region transcription start site region 103463
Rab11fip4os2 11 79670373 to 79675086 4713 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 2
D11Bhm108 11 79671579 to 79671658 79 DNA segment DNA segment, Chr 11, Boehm 108
Tssr103464 11 79673931 to 79673944 13 + TSS region transcription start site region 103464
Tssr109523 11 79675125 to 79675130 5 - TSS region transcription start site region 109523
Tssr103465 11 79694906 to 79694910 4 + TSS region transcription start site region 103465
Cpgi3370 11 79703806 to 79705094 1288 CpG island CpG island 3370
B230207N12Rik 11 79703875 to 79704449 574 unclassified gene RIKEN cDNA B230207N12 gene
Tssr109524 11 79704470 to 79704517 47 - TSS region transcription start site region 109524
Gm11205 11 79704570 to 79705014 444 + lincRNA gene predicted gene 11205
n-TTcgt3 11 79704650 to 79704721 71 + tRNA gene nuclear encoded tRNA threonine 3 (anticodon CGT)
Cpgi3371 11 79710696 to 79712387 1691 CpG island CpG island 3371
Tssr103466 11 79711288 to 79711311 23 + TSS region transcription start site region 103466
Tssr103467 11 79711328 to 79711358 30 + TSS region transcription start site region 103467
Tssr103468 11 79711359 to 79711375 16 + TSS region transcription start site region 103468
Mir193a 11 79711969 to 79712034 65 + miRNA gene microRNA 193a
Tssr103469 11 79715899 to 79715903 4 + TSS region transcription start site region 103469
Mir365-2 11 79726400 to 79726511 111 + miRNA gene microRNA 365-2
Gm46253 11 79728385 to 79731743 3358 + lncRNA gene predicted gene, 46253
D11Bhm187 11 79728989 to 79729052 63 DNA segment DNA segment, Chr 11, Boehm 187
9130204K15Rik 11 79745817 to 79796728 50911 - lincRNA gene RIKEN cDNA 9130204K15 gene
D11Bhm109 11 79753710 to 79753887 177 DNA segment DNA segment, Chr 11, Boehm 109
D11Mit262 11 79765904 to 79766006 102 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 262
Gm24454 11 79893584 to 79893715 131 - snoRNA gene predicted gene, 24454
Gm11203 11 79897222 to 79897962 740 + pseudogene predicted gene 11203
D11Bhm188 11 79904493 to 79904622 129 DNA segment DNA segment, Chr 11, Boehm 188
Gm11204 11 79905981 to 79906127 146 + pseudogene predicted gene 11204
D11Mit8 11 79922933 to 79923086 153 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 8
Utp6 11 79933956 to 79962387 28431 - protein coding gene UTP6 small subunit processome component
5430409L15Rik 11 79960125 to 79960518 393 unclassified gene RIKEN cDNA 5430409L15 gene
Cpgi3372 11 79962015 to 79962642 627 CpG island CpG island 3372
Tssr109525 11 79962348 to 79962373 25 - TSS region transcription start site region 109525
Tssr109526 11 79962374 to 79962398 24 - TSS region transcription start site region 109526
Tssr109527 11 79962414 to 79962425 11 - TSS region transcription start site region 109527
Tssr103470 11 79962589 to 79962611 22 + TSS region transcription start site region 103470
Gm30875 11 79972937 to 79975189 2252 + lncRNA gene predicted gene, 30875
Cpgi3373 11 79973617 to 79974637 1020 CpG island CpG island 3373
Tssr103471 11 79973672 to 79973687 15 + TSS region transcription start site region 103471
Tssr103472 11 79974202 to 79974250 48 + TSS region transcription start site region 103472
Tssr109528 11 79974456 to 79974468 12 - TSS region transcription start site region 109528
Gm10386 11 79992309 to 79992885 576 protein coding gene predicted gene 10386
Cpgi3374 11 79992438 to 79994030 1592 CpG island CpG island 3374
Tssr103473 11 79993062 to 79993122 60 + TSS region transcription start site region 103473
Suz12 11 79993106 to 80034123 41017 + protein coding gene SUZ12 polycomb repressive complex 2 subunit
Tssr103474 11 79993143 to 79993152 9 + TSS region transcription start site region 103474
Tssr103475 11 79993192 to 79993232 40 + TSS region transcription start site region 103475
D11Bhm110 11 79998463 to 79998612 149 DNA segment DNA segment, Chr 11, Boehm 110
Tssr103476 11 79999241 to 79999245 4 + TSS region transcription start site region 103476
Tssr103477 11 80012682 to 80012689 7 + TSS region transcription start site region 103477
Gm26563 11 80017354 to 80029868 12514 - lincRNA gene predicted gene, 26563
BC037438 11 80018479 to 80029877 11398 unclassified gene cDNA sequence BC037438
Crlf3 11 80046493 to 80080991 34498 - protein coding gene cytokine receptor-like factor 3
Tssr109529 11 80053312 to 80053316 4 - TSS region transcription start site region 109529
Tssr109530 11 80063267 to 80063290 23 - TSS region transcription start site region 109530
Tssr109531 11 80063409 to 80063428 19 - TSS region transcription start site region 109531
D11Bhm112 11 80067804 to 80067962 158 DNA segment DNA segment, Chr 11, Boehm 112
Cpgi3375 11 80080381 to 80081381 1000 CpG island CpG island 3375
Tssr109532 11 80080908 to 80080919 11 - TSS region transcription start site region 109532
Tssr109533 11 80080928 to 80081001 73 - TSS region transcription start site region 109533
Tssr109534 11 80081117 to 80081142 25 - TSS region transcription start site region 109534
Tssr109535 11 80081178 to 80081205 27 - TSS region transcription start site region 109535
D11Mit95 11 80087337 to 80087498 161 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 95
Cpgi3376 11 80089270 to 80089986 716 CpG island CpG island 3376
Tssr103478 11 80089385 to 80089417 32 + TSS region transcription start site region 103478
Atad5 11 80089400 to 80135794 46394 + protein coding gene ATPase family, AAA domain containing 5
Tssr103479 11 80089426 to 80089469 43 + TSS region transcription start site region 103479
Tssr103480 11 80136352 to 80136365 13 + TSS region transcription start site region 103480
Tssr103481 11 80136575 to 80136584 9 + TSS region transcription start site region 103481
Tefm 11 80136678 to 80142175 5497 - protein coding gene transcription elongation factor, mitochondrial
Tssr103482 11 80137953 to 80137983 30 + TSS region transcription start site region 103482
Tssr109536 11 80139942 to 80139969 27 - TSS region transcription start site region 109536
Cpgi3377 11 80141799 to 80142318 519 CpG island CpG island 3377
Tssr103483 11 80141811 to 80141855 44 + TSS region transcription start site region 103483
Tssr109537 11 80142099 to 80142112 13 - TSS region transcription start site region 109537
Tssr109538 11 80142123 to 80142162 39 - TSS region transcription start site region 109538
Tssr109539 11 80142164 to 80142177 13 - TSS region transcription start site region 109539
Tssr109540 11 80142998 to 80143013 15 - TSS region transcription start site region 109540
Cpgi3378 11 80153864 to 80154906 1042 CpG island CpG island 3378
Tssr103484 11 80154071 to 80154082 11 + TSS region transcription start site region 103484
Tssr103485 11 80154083 to 80154090 7 + TSS region transcription start site region 103485
Tssr103486 11 80154103 to 80154137 34 + TSS region transcription start site region 103486
Adap2 11 80154105 to 80178958 24853 + protein coding gene ArfGAP with dual PH domains 2
Tssr103487 11 80154555 to 80154569 14 + TSS region transcription start site region 103487
Tssr103488 11 80154596 to 80154616 20 + TSS region transcription start site region 103488
Adap2os 11 80158861 to 80177629 18768 - antisense lncRNA gene ArfGAP with dual PH domains 2, opposite strand
Tssr103489 11 80161340 to 80161353 13 + TSS region transcription start site region 103489
Tssr103490 11 80165670 to 80165679 9 + TSS region transcription start site region 103490
Tssr103491 11 80171483 to 80171488 5 + TSS region transcription start site region 103491
Tssr103492 11 80173403 to 80173423 20 + TSS region transcription start site region 103492
Tssr103493 11 80177312 to 80177319 7 + TSS region transcription start site region 103493
Tssr103494 11 80177377 to 80177381 4 + TSS region transcription start site region 103494
Tssr103495 11 80177444 to 80177448 4 + TSS region transcription start site region 103495
Tssr3598 11 80177467 to 80177491 24 + TSS region transcription start site region 3598
Tssr103496 11 80177932 to 80177943 11 + TSS region transcription start site region 103496
Tssr103497 11 80177967 to 80177993 26 + TSS region transcription start site region 103497
Tssr103498 11 80178020 to 80178045 25 + TSS region transcription start site region 103498
Tssr103499 11 80178196 to 80178227 31 + TSS region transcription start site region 103499
Tssr103500 11 80178273 to 80178284 11 + TSS region transcription start site region 103500
Tssr103501 11 80178550 to 80178567 17 + TSS region transcription start site region 103501
Tssr103502 11 80178656 to 80178665 9 + TSS region transcription start site region 103502
Tssr103503 11 80178709 to 80178724 15 + TSS region transcription start site region 103503
Tssr103504 11 80178755 to 80178761 6 + TSS region transcription start site region 103504
Tssr103505 11 80178851 to 80178858 7 + TSS region transcription start site region 103505
Tssr103506 11 80179158 to 80179174 16 + TSS region transcription start site region 103506
Tssr103507 11 80179322 to 80179335 13 + TSS region transcription start site region 103507
Tssr103508 11 80179353 to 80179368 15 + TSS region transcription start site region 103508
D11Bhm113 11 80180987 to 80181073 86 DNA segment DNA segment, Chr 11, Boehm 113
Cpgi3379 11 80183761 to 80184285 524 CpG island CpG island 3379
Tssr103509 11 80183861 to 80183882 21 + TSS region transcription start site region 103509
Rnf135 11 80183872 to 80199753 15881 + protein coding gene ring finger protein 135
Tssr103510 11 80183886 to 80183905 19 + TSS region transcription start site region 103510
Tssr3599 11 80183907 to 80183918 11 + TSS region transcription start site region 3599
Cpgi3380 11 80208711 to 80209753 1042 CpG island CpG island 3380
Tssr103511 11 80209019 to 80209057 38 + TSS region transcription start site region 103511
Rhot1 11 80209032 to 80267907 58875 + protein coding gene ras homolog family member T1
Tssr103512 11 80209066 to 80209164 98 + TSS region transcription start site region 103512
Tssr103513 11 80209714 to 80209718 4 + TSS region transcription start site region 103513
Tssr103514 11 80209902 to 80209905 3 + TSS region transcription start site region 103514
D11Bhm115 11 80254440 to 80254526 86 DNA segment DNA segment, Chr 11, Boehm 115
D11Bhm114 11 80254476 to 80254566 90 DNA segment DNA segment, Chr 11, Boehm 114
D11Bhm116 11 80255074 to 80255144 70 DNA segment DNA segment, Chr 11, Boehm 116
D11Bhm117 11 80276658 to 80276876 218 DNA segment DNA segment, Chr 11, Boehm 117
D11Bhm118 11 80295340 to 80295565 225 DNA segment DNA segment, Chr 11, Boehm 118
Cpgi3381 11 80300441 to 80302075 1634 CpG island CpG island 3381
Tssr103515 11 80300866 to 80300889 23 + TSS region transcription start site region 103515
Rhbdl3 11 80300912 to 80355955 55043 + protein coding gene rhomboid like 3
5730455P16Rik 11 80360492 to 80378034 17542 - protein coding gene RIKEN cDNA 5730455P16 gene
D11Bhm119 11 80363759 to 80363832 73 DNA segment DNA segment, Chr 11, Boehm 119
D11Bhm120 11 80376137 to 80376218 81 DNA segment DNA segment, Chr 11, Boehm 120
Cpgi3382 11 80377576 to 80378126 550 CpG island CpG island 3382
Tssr109541 11 80377975 to 80378025 50 - TSS region transcription start site region 109541
Cpgi3383 11 80383101 to 80383778 677 CpG island CpG island 3383
Tssr109542 11 80383150 to 80383182 32 - TSS region transcription start site region 109542
Zfp207 11 80383279 to 80405733 22454 + protein coding gene zinc finger protein 207
Tssr103516 11 80383299 to 80383304 5 + TSS region transcription start site region 103516
Tssr103517 11 80383309 to 80383336 27 + TSS region transcription start site region 103517
Tssr103518 11 80383398 to 80383415 17 + TSS region transcription start site region 103518
Tssr103519 11 80384042 to 80384048 6 + TSS region transcription start site region 103519
Tssr103520 11 80386518 to 80386525 7 + TSS region transcription start site region 103520
Tssr103521 11 80389074 to 80389092 18 + TSS region transcription start site region 103521
Tssr103522 11 80389416 to 80389419 3 + TSS region transcription start site region 103522
Tssr103523 11 80391828 to 80391851 23 + TSS region transcription start site region 103523
Tssr103524 11 80391929 to 80391948 19 + TSS region transcription start site region 103524
Tssr103525 11 80394275 to 80394413 138 + TSS region transcription start site region 103525
Tssr103526 11 80395535 to 80395548 13 + TSS region transcription start site region 103526
Tssr103527 11 80399628 to 80399634 6 + TSS region transcription start site region 103527
Tssr103528 11 80403345 to 80403349 4 + TSS region transcription start site region 103528
Cpgi3384 11 80428373 to 80429435 1062 CpG island CpG island 3384
Tssr103529 11 80428598 to 80428656 58 + TSS region transcription start site region 103529
Psmd11 11 80428615 to 80473248 44633 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Tssr109543 11 80429305 to 80429313 8 - TSS region transcription start site region 109543
Tssr103530 11 80429732 to 80429743 11 + TSS region transcription start site region 103530
Tssr103531 11 80431466 to 80431476 10 + TSS region transcription start site region 103531
Tssr103532 11 80442698 to 80442703 5 + TSS region transcription start site region 103532
Tssr103533 11 80444901 to 80444905 4 + TSS region transcription start site region 103533
Tssr103534 11 80456955 to 80456981 26 + TSS region transcription start site region 103534
D11Bhm121 11 80465350 to 80465461 111 DNA segment DNA segment, Chr 11, Boehm 121
Tssr103535 11 80465501 to 80465523 22 + TSS region transcription start site region 103535
D230035N22Rik 11 80466238 to 80467905 1667 unclassified gene RIKEN cDNA D230035N22 gene
Tssr103536 11 80467856 to 80467890 34 + TSS region transcription start site region 103536
Tssr103537 11 80470818 to 80470829 11 + TSS region transcription start site region 103537
Tssr103538 11 80472380 to 80472417 37 + TSS region transcription start site region 103538
Tssr103539 11 80472611 to 80472621 10 + TSS region transcription start site region 103539
Tssr103540 11 80472659 to 80472676 17 + TSS region transcription start site region 103540
Tssr103541 11 80472683 to 80472686 3 + TSS region transcription start site region 103541
Cpgi3386 11 80476429 to 80478230 1801 CpG island CpG island 3386
Tssr103542 11 80477015 to 80477085 70 + TSS region transcription start site region 103542
Cdk5r1 11 80477046 to 80481179 4133 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Tssr103543 11 80477336 to 80477383 47 + TSS region transcription start site region 103543
Tssr103544 11 80477397 to 80477416 19 + TSS region transcription start site region 103544
Tssr103545 11 80480955 to 80480965 10 + TSS region transcription start site region 103545
Myo1d 11 80482126 to 80780025 297899 - protein coding gene myosin ID
Cpgi3387 11 80484129 to 80484365 236 CpG island CpG island 3387
Tssr103546 11 80495044 to 80495051 7 + TSS region transcription start site region 103546
Tssr3600 11 80495069 to 80495081 12 + TSS region transcription start site region 3600
Tssr3601 11 80504687 to 80504691 4 + TSS region transcription start site region 3601
Tssr109544 11 80505077 to 80505093 16 - TSS region transcription start site region 109544
Tssr103547 11 80505254 to 80505276 22 + TSS region transcription start site region 103547
Tssr103548 11 80505313 to 80505331 18 + TSS region transcription start site region 103548
C030013C21Rik 11 80507410 to 80509106 1696 - sense intronic lncRNA gene RIKEN cDNA C030013C21 gene