Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:79366359-80056375

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
Nf1 11 79339693 to 79581612 241919 + protein coding gene neurofibromin 1
Gm11198 11 79371257 to 79372230 973 - pseudogene predicted gene 11198
Tssr103441 11 79390339 to 79390362 23 + TSS region transcription start site region 103441
D11Bhm105 11 79403776 to 79403874 98 DNA segment DNA segment, Chr 11, Boehm 105
Tssr103442 11 79412057 to 79412105 48 + TSS region transcription start site region 103442
Tssr103443 11 79412677 to 79412681 4 + TSS region transcription start site region 103443
D11Bhm106 11 79443852 to 79443940 88 DNA segment DNA segment, Chr 11, Boehm 106
Tssr103444 11 79450934 to 79450935 1 + TSS region transcription start site region 103444
Gm11199 11 79451941 to 79452447 506 - pseudogene predicted gene 11199
AU040972 11 79481723 to 79484031 2308 - antisense lncRNA gene expressed sequence AU040972
Tssr109478 11 79482338 to 79482347 9 - TSS region transcription start site region 109478
Tssr109479 11 79482383 to 79482400 17 - TSS region transcription start site region 109479
Tssr109480 11 79483454 to 79483473 19 - TSS region transcription start site region 109480
Tssr109481 11 79483896 to 79483901 5 - TSS region transcription start site region 109481
Tssr109482 11 79484027 to 79484057 30 - TSS region transcription start site region 109482
D11Bhm107 11 79499504 to 79499622 118 DNA segment DNA segment, Chr 11, Boehm 107
Omg 11 79500982 to 79504082 3100 - protein coding gene oligodendrocyte myelin glycoprotein
Tssr109483 11 79503967 to 79503978 11 - TSS region transcription start site region 109483
Tssr109484 11 79503984 to 79504056 72 - TSS region transcription start site region 109484
Tssr109485 11 79504078 to 79504089 11 - TSS region transcription start site region 109485
Tssr103445 11 79504186 to 79504210 24 + TSS region transcription start site region 103445
Tssr103446 11 79507537 to 79507568 31 + TSS region transcription start site region 103446
Tssr103447 11 79512182 to 79512185 3 + TSS region transcription start site region 103447
Evi2 11 79513385 to 79530589 17204 - protein coding gene ecotropic viral integration site 2
D11Bhm167 11 79514572 to 79514731 159 DNA segment DNA segment, Chr 11, Boehm 167
D11Bhm166 11 79514710 to 79514921 211 DNA segment DNA segment, Chr 11, Boehm 166
Evi2b 11 79515056 to 79523762 8706 - protein coding gene ecotropic viral integration site 2b
Tssr109486 11 79515569 to 79515581 12 - TSS region transcription start site region 109486
Tssr109487 11 79515767 to 79515779 12 - TSS region transcription start site region 109487
Tssr109488 11 79515965 to 79515968 3 - TSS region transcription start site region 109488
Tssr109489 11 79516271 to 79516272 1 - TSS region transcription start site region 109489
Tssr109490 11 79516318 to 79516329 11 - TSS region transcription start site region 109490
Tssr109491 11 79516351 to 79516363 12 - TSS region transcription start site region 109491
Tssr109492 11 79516378 to 79516412 34 - TSS region transcription start site region 109492
Tssr109493 11 79516417 to 79516430 13 - TSS region transcription start site region 109493
Tssr109494 11 79516432 to 79516447 15 - TSS region transcription start site region 109494
Tssr109495 11 79516472 to 79516483 11 - TSS region transcription start site region 109495
Tssr109496 11 79516485 to 79516504 19 - TSS region transcription start site region 109496
Tssr109497 11 79516524 to 79516555 31 - TSS region transcription start site region 109497
Tssr109498 11 79516585 to 79516597 12 - TSS region transcription start site region 109498
Tssr109499 11 79516622 to 79516633 11 - TSS region transcription start site region 109499
Tssr109500 11 79516653 to 79516664 11 - TSS region transcription start site region 109500
Tssr109501 11 79516693 to 79516704 11 - TSS region transcription start site region 109501
Tssr109502 11 79516719 to 79516728 9 - TSS region transcription start site region 109502
Tssr109503 11 79516794 to 79516805 11 - TSS region transcription start site region 109503
Tssr109504 11 79518671 to 79518702 31 - TSS region transcription start site region 109504
Tssr109505 11 79518830 to 79518846 16 - TSS region transcription start site region 109505
Tssr109506 11 79519353 to 79519362 9 - TSS region transcription start site region 109506
Tssr103448 11 79520212 to 79520226 14 + TSS region transcription start site region 103448
Tssr109507 11 79523716 to 79523753 37 - TSS region transcription start site region 109507
Tssr109508 11 79523760 to 79523761 1 - TSS region transcription start site region 109508
Tssr109509 11 79524334 to 79524381 47 - TSS region transcription start site region 109509
D11Bhm165 11 79525644 to 79525912 268 DNA segment DNA segment, Chr 11, Boehm 165
Tssr109510 11 79525846 to 79525853 7 - TSS region transcription start site region 109510
Evi2a 11 79526560 to 79530609 4049 - protein coding gene ecotropic viral integration site 2a
Tssr109511 11 79527674 to 79527691 17 - TSS region transcription start site region 109511
Tssr103449 11 79528132 to 79528137 5 + TSS region transcription start site region 103449
Tssr103450 11 79528178 to 79528192 14 + TSS region transcription start site region 103450
Tssr103451 11 79528203 to 79528215 12 + TSS region transcription start site region 103451
Tssr109512 11 79530392 to 79530402 10 - TSS region transcription start site region 109512
Tssr109513 11 79530407 to 79530418 11 - TSS region transcription start site region 109513
Tssr109514 11 79530423 to 79530435 12 - TSS region transcription start site region 109514
Tssr109515 11 79530441 to 79530468 27 - TSS region transcription start site region 109515
Tssr109516 11 79530475 to 79530488 13 - TSS region transcription start site region 109516
Tssr109517 11 79530502 to 79530513 11 - TSS region transcription start site region 109517
Tssr109518 11 79530517 to 79530532 15 - TSS region transcription start site region 109518
Tssr109519 11 79530549 to 79530565 16 - TSS region transcription start site region 109519
Tssr109520 11 79530569 to 79530595 26 - TSS region transcription start site region 109520
Tssr109521 11 79530605 to 79530614 9 - TSS region transcription start site region 109521
9530078B04Rik 11 79538124 to 79539250 1126 unclassified gene RIKEN cDNA 9530078B04 gene
Tssr103452 11 79540645 to 79540654 9 + TSS region transcription start site region 103452
Tssr103453 11 79578854 to 79578858 4 + TSS region transcription start site region 103453
Tssr103454 11 79579144 to 79579154 10 + TSS region transcription start site region 103454
Cpgi3367 11 79590480 to 79592010 1530 CpG island CpG island 3367
Tssr103455 11 79591120 to 79591224 104 + TSS region transcription start site region 103455
Rab11fip4 11 79591212 to 79698023 106811 + protein coding gene RAB11 family interacting protein 4 (class II)
Gm23293 11 79595165 to 79595268 103 + snRNA gene predicted gene, 23293
Rab11fip4os1 11 79607079 to 79623163 16084 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 1
Tssr109522 11 79623120 to 79623125 5 - TSS region transcription start site region 109522
Gm25867 11 79635311 to 79635413 102 - snRNA gene predicted gene, 25867
Gm30718 11 79638637 to 79646834 8197 - lncRNA gene predicted gene, 30718
Gm24887 11 79639021 to 79639128 107 - snRNA gene predicted gene, 24887
Cpgi3368 11 79652962 to 79653404 442 CpG island CpG island 3368
Tssr103456 11 79653132 to 79653145 13 + TSS region transcription start site region 103456
Tssr103457 11 79653181 to 79653186 5 + TSS region transcription start site region 103457
Cpgi3369 11 79660320 to 79661370 1050 CpG island CpG island 3369
Tssr103458 11 79660532 to 79660561 29 + TSS region transcription start site region 103458
Tssr103459 11 79660572 to 79660618 46 + TSS region transcription start site region 103459
Tssr103460 11 79660637 to 79660648 11 + TSS region transcription start site region 103460
Tssr103461 11 79660674 to 79660690 16 + TSS region transcription start site region 103461
Tssr103462 11 79660704 to 79660727 23 + TSS region transcription start site region 103462
Tssr103463 11 79660741 to 79660752 11 + TSS region transcription start site region 103463
Rab11fip4os2 11 79670373 to 79675086 4713 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 2
D11Bhm108 11 79671579 to 79671658 79 DNA segment DNA segment, Chr 11, Boehm 108
Tssr103464 11 79673931 to 79673944 13 + TSS region transcription start site region 103464
Tssr109523 11 79675125 to 79675130 5 - TSS region transcription start site region 109523
Tssr103465 11 79694906 to 79694910 4 + TSS region transcription start site region 103465
Cpgi3370 11 79703806 to 79705094 1288 CpG island CpG island 3370
B230207N12Rik 11 79703875 to 79704449 574 unclassified gene RIKEN cDNA B230207N12 gene
Tssr109524 11 79704470 to 79704517 47 - TSS region transcription start site region 109524
Gm11205 11 79704570 to 79705014 444 + lincRNA gene predicted gene 11205
n-TTcgt3 11 79704650 to 79704721 71 + tRNA gene nuclear encoded tRNA threonine 3 (anticodon CGT)
Cpgi3371 11 79710696 to 79712387 1691 CpG island CpG island 3371
Tssr103466 11 79711288 to 79711311 23 + TSS region transcription start site region 103466
Tssr103467 11 79711328 to 79711358 30 + TSS region transcription start site region 103467
Tssr103468 11 79711359 to 79711375 16 + TSS region transcription start site region 103468
Mir193a 11 79711969 to 79712034 65 + miRNA gene microRNA 193a
Tssr103469 11 79715899 to 79715903 4 + TSS region transcription start site region 103469
Mir365-2 11 79726400 to 79726511 111 + miRNA gene microRNA 365-2
Gm46253 11 79728385 to 79731743 3358 + lncRNA gene predicted gene, 46253
D11Bhm187 11 79728989 to 79729052 63 DNA segment DNA segment, Chr 11, Boehm 187
9130204K15Rik 11 79745817 to 79796728 50911 - lincRNA gene RIKEN cDNA 9130204K15 gene
D11Bhm109 11 79753710 to 79753887 177 DNA segment DNA segment, Chr 11, Boehm 109
D11Mit262 11 79765904 to 79766006 102 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 262
Gm24454 11 79893584 to 79893715 131 - snoRNA gene predicted gene, 24454
Gm11203 11 79897222 to 79897962 740 + pseudogene predicted gene 11203
D11Bhm188 11 79904493 to 79904622 129 DNA segment DNA segment, Chr 11, Boehm 188
Gm11204 11 79905981 to 79906127 146 + pseudogene predicted gene 11204
D11Mit8 11 79922933 to 79923086 153 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 8
Utp6 11 79933956 to 79962387 28431 - protein coding gene UTP6 small subunit processome component
5430409L15Rik 11 79960125 to 79960518 393 unclassified gene RIKEN cDNA 5430409L15 gene
Cpgi3372 11 79962015 to 79962642 627 CpG island CpG island 3372
Tssr109525 11 79962348 to 79962373 25 - TSS region transcription start site region 109525
Tssr109526 11 79962374 to 79962398 24 - TSS region transcription start site region 109526
Tssr109527 11 79962414 to 79962425 11 - TSS region transcription start site region 109527
Tssr103470 11 79962589 to 79962611 22 + TSS region transcription start site region 103470
Gm30875 11 79972937 to 79975189 2252 + lncRNA gene predicted gene, 30875
Cpgi3373 11 79973617 to 79974637 1020 CpG island CpG island 3373
Tssr103471 11 79973672 to 79973687 15 + TSS region transcription start site region 103471
Tssr103472 11 79974202 to 79974250 48 + TSS region transcription start site region 103472
Tssr109528 11 79974456 to 79974468 12 - TSS region transcription start site region 109528
Gm10386 11 79992309 to 79992885 576 protein coding gene predicted gene 10386
Cpgi3374 11 79992438 to 79994030 1592 CpG island CpG island 3374
Tssr103473 11 79993062 to 79993122 60 + TSS region transcription start site region 103473
Suz12 11 79993106 to 80034123 41017 + protein coding gene SUZ12 polycomb repressive complex 2 subunit
Tssr103474 11 79993143 to 79993152 9 + TSS region transcription start site region 103474
Tssr103475 11 79993192 to 79993232 40 + TSS region transcription start site region 103475
D11Bhm110 11 79998463 to 79998612 149 DNA segment DNA segment, Chr 11, Boehm 110
Tssr103476 11 79999241 to 79999245 4 + TSS region transcription start site region 103476
Tssr103477 11 80012682 to 80012689 7 + TSS region transcription start site region 103477
Gm26563 11 80017354 to 80029868 12514 - lincRNA gene predicted gene, 26563
BC037438 11 80018479 to 80029877 11398 unclassified gene cDNA sequence BC037438
Crlf3 11 80046493 to 80080991 34498 - protein coding gene cytokine receptor-like factor 3
Tssr109529 11 80053312 to 80053316 4 - TSS region transcription start site region 109529
T2dm5sa 11 104611872 to 79922933 -24688939 QTL type 2 diabetes mellitus 5 in SMXA RI mice