Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78979582-79699635

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgals9 11 78962979 to 78984924 21945 - protein coding gene lectin, galactose binding, soluble 9
Tssr109452 11 78984834 to 78984923 89 - TSS region transcription start site region 109452
Tssr109453 11 78984936 to 78984943 7 - TSS region transcription start site region 109453
Tssr109454 11 78984947 to 78984957 10 - TSS region transcription start site region 109454
Tssr109455 11 78984966 to 78984972 6 - TSS region transcription start site region 109455
D11Bhm88 11 79006816 to 79006910 94 DNA segment DNA segment, Chr 11, Boehm 88
Ksr1 11 79013440 to 79146407 132967 - protein coding gene kinase suppressor of ras 1
D11Bhm89 11 79013822 to 79013996 174 DNA segment DNA segment, Chr 11, Boehm 89
Cpgi3363 11 79015912 to 79016369 457 CpG island CpG island 3363
Tssr109456 11 79023505 to 79023525 20 - TSS region transcription start site region 109456
Gm11201 11 79023597 to 79031057 7460 + antisense lncRNA gene predicted gene 11201
D11Bhm90 11 79047192 to 79047434 242 DNA segment DNA segment, Chr 11, Boehm 90
Tssr109457 11 79047483 to 79047496 13 - TSS region transcription start site region 109457
Tssr103432 11 79051331 to 79051347 16 + TSS region transcription start site region 103432
D11Bhm91 11 79054517 to 79054685 168 DNA segment DNA segment, Chr 11, Boehm 91
D11Bhm92 11 79056688 to 79057009 321 DNA segment DNA segment, Chr 11, Boehm 92
Tssr3593 11 79057606 to 79057617 11 - TSS region transcription start site region 3593
Tssr109458 11 79059794 to 79059810 16 - TSS region transcription start site region 109458
Tssr109459 11 79059815 to 79059842 27 - TSS region transcription start site region 109459
Tssr109460 11 79059843 to 79059853 10 - TSS region transcription start site region 109460
Tssr109461 11 79059872 to 79059879 7 - TSS region transcription start site region 109461
D11Bhm93 11 79063733 to 79063987 254 DNA segment DNA segment, Chr 11, Boehm 93
D11Seg44 11 79073968 to 79074076 108 DNA segment DNA segment, Chr 11, Segre 44
Tssr3594 11 79076632 to 79076636 4 - TSS region transcription start site region 3594
Tssr109462 11 79087008 to 79087012 4 - TSS region transcription start site region 109462
Tssr103433 11 79087065 to 79087066 1 + TSS region transcription start site region 103433
Tssr103434 11 79087099 to 79087135 36 + TSS region transcription start site region 103434
D11Mit96 11 79111741 to 79111895 154 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 96
Tssr109463 11 79112641 to 79112648 7 - TSS region transcription start site region 109463
D11Bhm95 11 79113860 to 79114008 148 DNA segment DNA segment, Chr 11, Boehm 95
D11Bhm96 11 79128118 to 79128168 50 DNA segment DNA segment, Chr 11, Boehm 96
D11Bhm97 11 79128216 to 79128313 97 DNA segment DNA segment, Chr 11, Boehm 97
D11Mit91 11 79134586 to 79134752 166 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 91
Tssr109464 11 79140087 to 79140091 4 - TSS region transcription start site region 109464
Cpgi3364 11 79145477 to 79146808 1331 CpG island CpG island 3364
Tssr109465 11 79146390 to 79146395 5 - TSS region transcription start site region 109465
Tssr109466 11 79146413 to 79146422 9 - TSS region transcription start site region 109466
Tssr109467 11 79146463 to 79146482 19 - TSS region transcription start site region 109467
D11Bhm98 11 79147418 to 79147734 316 DNA segment DNA segment, Chr 11, Boehm 98
D11Bhm99 11 79150342 to 79150428 86 DNA segment DNA segment, Chr 11, Boehm 99
D11Bhm100 11 79183508 to 79183697 189 DNA segment DNA segment, Chr 11, Boehm 100
Gm30413 11 79183525 to 79192358 8833 - lncRNA gene predicted gene, 30413
D11Bhm164 11 79185417 to 79185595 178 DNA segment DNA segment, Chr 11, Boehm 164
D11Bhm101 11 79193367 to 79193452 85 DNA segment DNA segment, Chr 11, Boehm 101
Gm11200 11 79212796 to 79213243 447 + pseudogene predicted gene 11200
Gm30470 11 79224685 to 79248435 23750 + lncRNA gene predicted gene, 30470
D11Bhm102 11 79229837 to 79230141 304 DNA segment DNA segment, Chr 11, Boehm 102
Wsb1 11 79239372 to 79254671 15299 - protein coding gene WD repeat and SOCS box-containing 1
Tssr109468 11 79239897 to 79239914 17 - TSS region transcription start site region 109468
Tssr109469 11 79242491 to 79242501 10 - TSS region transcription start site region 109469
Tssr109470 11 79243314 to 79243345 31 - TSS region transcription start site region 109470
Tssr109471 11 79243381 to 79243430 49 - TSS region transcription start site region 109471
Tssr109472 11 79243456 to 79243468 12 - TSS region transcription start site region 109472
Tssr3595 11 79244453 to 79244467 14 - TSS region transcription start site region 3595
D11Bhm103 11 79245060 to 79245144 84 DNA segment DNA segment, Chr 11, Boehm 103
Tssr109473 11 79250972 to 79250992 20 - TSS region transcription start site region 109473
Cpgi3365 11 79253956 to 79254971 1015 CpG island CpG island 3365
Tssr109474 11 79254663 to 79254685 22 - TSS region transcription start site region 109474
Gm44787 11 79258586 to 79273893 15307 - lincRNA gene predicted gene 44787
D11Mit34 11 79265179 to 79265327 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 34
Dautb4 11 79265179 to 79265327 148 QTL dopamine uptake transporter binding 4
D11Mit40 11 79265183 to 79265389 206 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 40
D11Mit32 11 79269241 to 79269401 160 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 32
Tssr109475 11 79273880 to 79273891 11 - TSS region transcription start site region 109475
D11Mit94 11 79274749 to 79274874 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 94
Tssr103435 11 79276580 to 79276592 12 + TSS region transcription start site region 103435
Tssr3596 11 79276780 to 79276783 3 + TSS region transcription start site region 3596
Tssr109476 11 79287572 to 79287584 12 - TSS region transcription start site region 109476
D11Bhm186 11 79288429 to 79288539 110 DNA segment DNA segment, Chr 11, Boehm 186
Gm9964 11 79296179 to 79296906 727 - protein coding gene predicted gene 9964
Gm30561 11 79305519 to 79326136 20617 + lncRNA gene predicted gene, 30561
Tssr103436 11 79306656 to 79306676 20 + TSS region transcription start site region 103436
D11Mit366 11 79314561 to 79314674 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 366
Tssr103437 11 79329587 to 79329593 6 + TSS region transcription start site region 103437
Cpgi3366 11 79339197 to 79340289 1092 CpG island CpG island 3366
Tssr109477 11 79339294 to 79339299 5 - TSS region transcription start site region 109477
Tssr103438 11 79339582 to 79339635 53 + TSS region transcription start site region 103438
Tssr3597 11 79339639 to 79339640 1 + TSS region transcription start site region 3597
Tssr103439 11 79339641 to 79339693 52 + TSS region transcription start site region 103439
Nf1 11 79339693 to 79581612 241919 + protein coding gene neurofibromin 1
Tssr103440 11 79339849 to 79339913 64 + TSS region transcription start site region 103440
D11Bhm104 11 79359961 to 79360046 85 DNA segment DNA segment, Chr 11, Boehm 104
Gm11198 11 79371257 to 79372230 973 - pseudogene predicted gene 11198
Tssr103441 11 79390339 to 79390362 23 + TSS region transcription start site region 103441
D11Bhm105 11 79403776 to 79403874 98 DNA segment DNA segment, Chr 11, Boehm 105
Tssr103442 11 79412057 to 79412105 48 + TSS region transcription start site region 103442
Tssr103443 11 79412677 to 79412681 4 + TSS region transcription start site region 103443
D11Bhm106 11 79443852 to 79443940 88 DNA segment DNA segment, Chr 11, Boehm 106
Tssr103444 11 79450934 to 79450935 1 + TSS region transcription start site region 103444
Gm11199 11 79451941 to 79452447 506 - pseudogene predicted gene 11199
AU040972 11 79481723 to 79484031 2308 - antisense lncRNA gene expressed sequence AU040972
Tssr109478 11 79482338 to 79482347 9 - TSS region transcription start site region 109478
Tssr109479 11 79482383 to 79482400 17 - TSS region transcription start site region 109479
Tssr109480 11 79483454 to 79483473 19 - TSS region transcription start site region 109480
Tssr109481 11 79483896 to 79483901 5 - TSS region transcription start site region 109481
Tssr109482 11 79484027 to 79484057 30 - TSS region transcription start site region 109482
D11Bhm107 11 79499504 to 79499622 118 DNA segment DNA segment, Chr 11, Boehm 107
Omg 11 79500982 to 79504082 3100 - protein coding gene oligodendrocyte myelin glycoprotein
Tssr109483 11 79503967 to 79503978 11 - TSS region transcription start site region 109483
Tssr109484 11 79503984 to 79504056 72 - TSS region transcription start site region 109484
Tssr109485 11 79504078 to 79504089 11 - TSS region transcription start site region 109485
Tssr103445 11 79504186 to 79504210 24 + TSS region transcription start site region 103445
Tssr103446 11 79507537 to 79507568 31 + TSS region transcription start site region 103446
Tssr103447 11 79512182 to 79512185 3 + TSS region transcription start site region 103447
Evi2 11 79513385 to 79530589 17204 - protein coding gene ecotropic viral integration site 2
D11Bhm167 11 79514572 to 79514731 159 DNA segment DNA segment, Chr 11, Boehm 167
D11Bhm166 11 79514710 to 79514921 211 DNA segment DNA segment, Chr 11, Boehm 166
Evi2b 11 79515056 to 79523762 8706 - protein coding gene ecotropic viral integration site 2b
Tssr109486 11 79515569 to 79515581 12 - TSS region transcription start site region 109486
Tssr109487 11 79515767 to 79515779 12 - TSS region transcription start site region 109487
Tssr109488 11 79515965 to 79515968 3 - TSS region transcription start site region 109488
Tssr109489 11 79516271 to 79516272 1 - TSS region transcription start site region 109489
Tssr109490 11 79516318 to 79516329 11 - TSS region transcription start site region 109490
Tssr109491 11 79516351 to 79516363 12 - TSS region transcription start site region 109491
Tssr109492 11 79516378 to 79516412 34 - TSS region transcription start site region 109492
Tssr109493 11 79516417 to 79516430 13 - TSS region transcription start site region 109493
Tssr109494 11 79516432 to 79516447 15 - TSS region transcription start site region 109494
Tssr109495 11 79516472 to 79516483 11 - TSS region transcription start site region 109495
Tssr109496 11 79516485 to 79516504 19 - TSS region transcription start site region 109496
Tssr109497 11 79516524 to 79516555 31 - TSS region transcription start site region 109497
Tssr109498 11 79516585 to 79516597 12 - TSS region transcription start site region 109498
Tssr109499 11 79516622 to 79516633 11 - TSS region transcription start site region 109499
Tssr109500 11 79516653 to 79516664 11 - TSS region transcription start site region 109500
Tssr109501 11 79516693 to 79516704 11 - TSS region transcription start site region 109501
Tssr109502 11 79516719 to 79516728 9 - TSS region transcription start site region 109502
Tssr109503 11 79516794 to 79516805 11 - TSS region transcription start site region 109503
Tssr109504 11 79518671 to 79518702 31 - TSS region transcription start site region 109504
Tssr109505 11 79518830 to 79518846 16 - TSS region transcription start site region 109505
Tssr109506 11 79519353 to 79519362 9 - TSS region transcription start site region 109506
Tssr103448 11 79520212 to 79520226 14 + TSS region transcription start site region 103448
Tssr109507 11 79523716 to 79523753 37 - TSS region transcription start site region 109507
Tssr109508 11 79523760 to 79523761 1 - TSS region transcription start site region 109508
Tssr109509 11 79524334 to 79524381 47 - TSS region transcription start site region 109509
D11Bhm165 11 79525644 to 79525912 268 DNA segment DNA segment, Chr 11, Boehm 165
Tssr109510 11 79525846 to 79525853 7 - TSS region transcription start site region 109510
Evi2a 11 79526560 to 79530609 4049 - protein coding gene ecotropic viral integration site 2a
Tssr109511 11 79527674 to 79527691 17 - TSS region transcription start site region 109511
Tssr103449 11 79528132 to 79528137 5 + TSS region transcription start site region 103449
Tssr103450 11 79528178 to 79528192 14 + TSS region transcription start site region 103450
Tssr103451 11 79528203 to 79528215 12 + TSS region transcription start site region 103451
Tssr109512 11 79530392 to 79530402 10 - TSS region transcription start site region 109512
Tssr109513 11 79530407 to 79530418 11 - TSS region transcription start site region 109513
Tssr109514 11 79530423 to 79530435 12 - TSS region transcription start site region 109514
Tssr109515 11 79530441 to 79530468 27 - TSS region transcription start site region 109515
Tssr109516 11 79530475 to 79530488 13 - TSS region transcription start site region 109516
Tssr109517 11 79530502 to 79530513 11 - TSS region transcription start site region 109517
Tssr109518 11 79530517 to 79530532 15 - TSS region transcription start site region 109518
Tssr109519 11 79530549 to 79530565 16 - TSS region transcription start site region 109519
Tssr109520 11 79530569 to 79530595 26 - TSS region transcription start site region 109520
Tssr109521 11 79530605 to 79530614 9 - TSS region transcription start site region 109521
9530078B04Rik 11 79538124 to 79539250 1126 unclassified gene RIKEN cDNA 9530078B04 gene
Tssr103452 11 79540645 to 79540654 9 + TSS region transcription start site region 103452
Tssr103453 11 79578854 to 79578858 4 + TSS region transcription start site region 103453
Tssr103454 11 79579144 to 79579154 10 + TSS region transcription start site region 103454
Cpgi3367 11 79590480 to 79592010 1530 CpG island CpG island 3367
Tssr103455 11 79591120 to 79591224 104 + TSS region transcription start site region 103455
Rab11fip4 11 79591212 to 79698023 106811 + protein coding gene RAB11 family interacting protein 4 (class II)
Gm23293 11 79595165 to 79595268 103 + snRNA gene predicted gene, 23293
Rab11fip4os1 11 79607079 to 79623163 16084 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 1
Tssr109522 11 79623120 to 79623125 5 - TSS region transcription start site region 109522
Gm25867 11 79635311 to 79635413 102 - snRNA gene predicted gene, 25867
Gm30718 11 79638637 to 79646834 8197 - lncRNA gene predicted gene, 30718
Gm24887 11 79639021 to 79639128 107 - snRNA gene predicted gene, 24887
Cpgi3368 11 79652962 to 79653404 442 CpG island CpG island 3368
Tssr103456 11 79653132 to 79653145 13 + TSS region transcription start site region 103456
Tssr103457 11 79653181 to 79653186 5 + TSS region transcription start site region 103457
Cpgi3369 11 79660320 to 79661370 1050 CpG island CpG island 3369
Tssr103458 11 79660532 to 79660561 29 + TSS region transcription start site region 103458
Tssr103459 11 79660572 to 79660618 46 + TSS region transcription start site region 103459
Tssr103460 11 79660637 to 79660648 11 + TSS region transcription start site region 103460
Tssr103461 11 79660674 to 79660690 16 + TSS region transcription start site region 103461
Tssr103462 11 79660704 to 79660727 23 + TSS region transcription start site region 103462
Tssr103463 11 79660741 to 79660752 11 + TSS region transcription start site region 103463
Rab11fip4os2 11 79670373 to 79675086 4713 - antisense lncRNA gene RAB11 family interacting protein 4 (class II), opposite strand 2
D11Bhm108 11 79671579 to 79671658 79 DNA segment DNA segment, Chr 11, Boehm 108
Tssr103464 11 79673931 to 79673944 13 + TSS region transcription start site region 103464
Tssr109523 11 79675125 to 79675130 5 - TSS region transcription start site region 109523
Tssr103465 11 79694906 to 79694910 4 + TSS region transcription start site region 103465
Lore4 11 107725646 to 79265183 -28460463 QTL loss of righting induced by ethanol 4