Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78720399-78940403

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Bhm158 11 78724510 to 78724609 99 DNA segment DNA segment, Chr 11, Boehm 158
Ccnq 11 78750506 to 78751729 1223 - protein coding gene cyclin Q
Cpgi3359 11 78751327 to 78752084 757 CpG island CpG island 3359
Tssr109421 11 78751656 to 78751711 55 - TSS region transcription start site region 109421
Gm23840 11 78754426 to 78754522 96 - miRNA gene predicted gene, 23840
D11Bhm159 11 78758149 to 78758291 142 DNA segment DNA segment, Chr 11, Boehm 159
D11Mit117 11 78770210 to 78770319 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 117
D11Bhm72 11 78771280 to 78771385 105 DNA segment DNA segment, Chr 11, Boehm 72
Tssr3590 11 78772812 to 78772817 5 + TSS region transcription start site region 3590
D11Bhm73 11 78772893 to 78773103 210 DNA segment DNA segment, Chr 11, Boehm 73
D11Bhm74 11 78778210 to 78778427 217 DNA segment DNA segment, Chr 11, Boehm 74
D11Bhm76 11 78808262 to 78808592 330 DNA segment DNA segment, Chr 11, Boehm 76
D11Bhm77 11 78820263 to 78820542 279 DNA segment DNA segment, Chr 11, Boehm 77
D11Bhm78 11 78823344 to 78823566 222 DNA segment DNA segment, Chr 11, Boehm 78
Gm23219 11 78824387 to 78824473 86 + snRNA gene predicted gene, 23219
D11Bhm79 11 78824488 to 78824578 90 DNA segment DNA segment, Chr 11, Boehm 79
Cpgi3360 11 78826429 to 78827004 575 CpG island CpG island 3360
Tssr103332 11 78826575 to 78826618 43 + TSS region transcription start site region 103332
Lyrm9 11 78826595 to 78843899 17304 + protein coding gene LYR motif containing 9
Tssr103333 11 78830399 to 78830403 4 + TSS region transcription start site region 103333
Gm18950 11 78876539 to 78877167 628 - pseudogene predicted gene, 18950
D11Mit246a 11 78877287 to 78877392 105 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 246a
D11Mit246b 11 78878445 to 78878546 101 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 246b
D11Bhm80 11 78884603 to 78884785 182 DNA segment DNA segment, Chr 11, Boehm 80
D11Bhm81 11 78884935 to 78885098 163 DNA segment DNA segment, Chr 11, Boehm 81
Tssr103334 11 78885423 to 78885428 5 + TSS region transcription start site region 103334
Gm19741 11 78890369 to 78894712 4343 - pseudogene predicted gene, 19741
D11Bhm160 11 78919435 to 78919606 171 DNA segment DNA segment, Chr 11, Boehm 160
D11Mit144 11 78919466 to 78919608 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 144
Nos2 11 78920787 to 78960232 39445 + protein coding gene nitric oxide synthase 2, inducible
Tssr103335 11 78920819 to 78920834 15 + TSS region transcription start site region 103335
Tssr103336 11 78922217 to 78922306 89 + TSS region transcription start site region 103336
Tssr103337 11 78922322 to 78922339 17 + TSS region transcription start site region 103337
Tssr103338 11 78924210 to 78924217 7 + TSS region transcription start site region 103338
Cpgi3361 11 78924878 to 78925606 728 CpG island CpG island 3361
Tssr103339 11 78925174 to 78925197 23 + TSS region transcription start site region 103339
Tssr103340 11 78926093 to 78926105 12 + TSS region transcription start site region 103340
Tssr103341 11 78926549 to 78926574 25 + TSS region transcription start site region 103341
Tssr103342 11 78927402 to 78927412 10 + TSS region transcription start site region 103342
Tssr103343 11 78928590 to 78928599 9 + TSS region transcription start site region 103343
Tssr103344 11 78928600 to 78928619 19 + TSS region transcription start site region 103344
Tssr103345 11 78929746 to 78929770 24 + TSS region transcription start site region 103345
Tssr103346 11 78929776 to 78929788 12 + TSS region transcription start site region 103346
Tssr103347 11 78929820 to 78929832 12 + TSS region transcription start site region 103347
Tssr103348 11 78929835 to 78929845 10 + TSS region transcription start site region 103348
Tssr103349 11 78931593 to 78931601 8 + TSS region transcription start site region 103349
Tssr103350 11 78931610 to 78931627 17 + TSS region transcription start site region 103350
Tssr103351 11 78931648 to 78931657 9 + TSS region transcription start site region 103351
Tssr103352 11 78931664 to 78931679 15 + TSS region transcription start site region 103352
D11Bhm163 11 78934575 to 78934674 99 DNA segment DNA segment, Chr 11, Boehm 163
Tssr103353 11 78935350 to 78935357 7 + TSS region transcription start site region 103353
Tssr103354 11 78935362 to 78935366 4 + TSS region transcription start site region 103354
Tssr103355 11 78935394 to 78935419 25 + TSS region transcription start site region 103355
Tssr109422 11 78935403 to 78935432 29 - TSS region transcription start site region 109422
Tssr103356 11 78935422 to 78935433 11 + TSS region transcription start site region 103356
Tssr103357 11 78935464 to 78935476 12 + TSS region transcription start site region 103357
Tssr109423 11 78935466 to 78935477 11 - TSS region transcription start site region 109423
Tssr103358 11 78936399 to 78936423 24 + TSS region transcription start site region 103358
Tssr103359 11 78936429 to 78936464 35 + TSS region transcription start site region 103359
Tssr109424 11 78936432 to 78936472 40 - TSS region transcription start site region 109424
Tssr103360 11 78936491 to 78936499 8 + TSS region transcription start site region 103360
D11Bhm161 11 78937256 to 78937383 127 DNA segment DNA segment, Chr 11, Boehm 161
Tssr103361 11 78937557 to 78937572 15 + TSS region transcription start site region 103361
Tssr103362 11 78937808 to 78937852 44 + TSS region transcription start site region 103362
Tssr103363 11 78937888 to 78937898 10 + TSS region transcription start site region 103363
Tssr103364 11 78938183 to 78938191 8 + TSS region transcription start site region 103364
Tssr103365 11 78940001 to 78940016 15 + TSS region transcription start site region 103365
Tssr103366 11 78940042 to 78940061 19 + TSS region transcription start site region 103366
Tssr103367 11 78940248 to 78940262 14 + TSS region transcription start site region 103367
Tssr103368 11 78940263 to 78940276 13 + TSS region transcription start site region 103368
Tssr103369 11 78940306 to 78940315 9 + TSS region transcription start site region 103369
Tssr103370 11 78940346 to 78940355 9 + TSS region transcription start site region 103370