Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78502097-78822261

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vtn 11 78499120 to 78502325 3205 + protein coding gene vitronectin
Tssr103321 11 78502173 to 78502194 21 + TSS region transcription start site region 103321
Tssr103322 11 78503498 to 78503503 5 + TSS region transcription start site region 103322
Sebox 11 78503513 to 78505081 1568 + protein coding gene SEBOX homeobox
Tmem199 11 78507055 to 78512168 5113 - protein coding gene transmembrane protein 199
Cpgi3353 11 78511822 to 78512772 950 CpG island CpG island 3353
Tssr109403 11 78512105 to 78512148 43 - TSS region transcription start site region 109403
Tssr103323 11 78512228 to 78512237 9 + TSS region transcription start site region 103323
Tssr103324 11 78512243 to 78512296 53 + TSS region transcription start site region 103324
Poldip2 11 78512296 to 78522736 10440 + protein coding gene polymerase (DNA-directed), delta interacting protein 2
Tssr103325 11 78512301 to 78512312 11 + TSS region transcription start site region 103325
D11Seg38 11 78513921 to 78514002 81 DNA segment DNA segment, Chr 11, Segre 38
D11Seg33 11 78514723 to 78514919 196 DNA segment DNA segment, Chr 11, Segre 33
Tnfaip1 11 78522850 to 78536260 13410 - protein coding gene tumor necrosis factor, alpha-induced protein 1 (endothelial)
D11Bhm59 11 78523712 to 78523911 199 DNA segment DNA segment, Chr 11, Boehm 59
D11Seg36 11 78525379 to 78525492 113 DNA segment DNA segment, Chr 11, Segre 36
D11Bhm60 11 78527076 to 78527199 123 DNA segment DNA segment, Chr 11, Boehm 60
Cpgi3354 11 78535705 to 78536864 1159 CpG island CpG island 3354
Tssr109404 11 78536107 to 78536215 108 - TSS region transcription start site region 109404
Tssr109405 11 78536216 to 78536227 11 - TSS region transcription start site region 109405
Tssr109406 11 78536235 to 78536248 13 - TSS region transcription start site region 109406
Tssr103326 11 78536355 to 78536368 13 + TSS region transcription start site region 103326
Tssr103327 11 78536393 to 78536492 99 + TSS region transcription start site region 103327
Ift20 11 78536436 to 78541473 5037 + protein coding gene intraflagellar transport 20
Tssr103328 11 78536499 to 78536514 15 + TSS region transcription start site region 103328
Tssr103329 11 78536530 to 78536541 11 + TSS region transcription start site region 103329
Tssr109407 11 78541470 to 78541474 4 - TSS region transcription start site region 109407
Tmem97 11 78541817 to 78550735 8918 - protein coding gene transmembrane protein 97
D11Bhm61 11 78543180 to 78543377 197 DNA segment DNA segment, Chr 11, Boehm 61
D11Seg37 11 78543508 to 78543608 100 DNA segment DNA segment, Chr 11, Segre 37
Cpgi3355 11 78550319 to 78551125 806 CpG island CpG island 3355
Tssr109408 11 78550674 to 78550749 75 - TSS region transcription start site region 109408
Tssr109409 11 78550758 to 78550771 13 - TSS region transcription start site region 109409
Tssr109410 11 78550801 to 78550812 11 - TSS region transcription start site region 109410
Tssr103330 11 78550921 to 78550960 39 + TSS region transcription start site region 103330
D11Bhm157 11 78561174 to 78561305 131 DNA segment DNA segment, Chr 11, Boehm 157
D11Mit353 11 78561209 to 78561299 90 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 353
D11Bhm181e 11 78561319 to 78561600 281 - pseudogene DNA segment, Chr 11, Boehm 181, expressed
Gm22947 11 78561645 to 78561735 90 - snoRNA gene predicted gene, 22947
Nlk 11 78567168 to 78697373 130205 - protein coding gene nemo like kinase
D2Abb1e 11 78567228 to 78567440 212 DNA segment DNA segment, Chr 2, Abbott 1 expressed
D11Bhm62 11 78569243 to 78569458 215 DNA segment DNA segment, Chr 11, Boehm 62
Gm17235 11 78576237 to 78577352 1115 + pseudogene predicted gene 17235
D11Seg41 11 78581087 to 78581208 121 DNA segment DNA segment, Chr 11, Segre 41
Gm11196 11 78585161 to 78585555 394 - pseudogene predicted gene 11196
D11Bhm63 11 78603691 to 78603775 84 DNA segment DNA segment, Chr 11, Boehm 63
Tssr109411 11 78608169 to 78608173 4 - TSS region transcription start site region 109411
5830445D09Rik 11 78615534 to 78616561 1027 unclassified gene RIKEN cDNA 5830445D09 gene
D11Bhm64 11 78616366 to 78616442 76 DNA segment DNA segment, Chr 11, Boehm 64
D11Bhm65 11 78628139 to 78628300 161 DNA segment DNA segment, Chr 11, Boehm 65
D11Seg42 11 78632677 to 78633441 764 DNA segment DNA segment, Chr 11, Segre 42
D11Bhm66 11 78648656 to 78648714 58 DNA segment DNA segment, Chr 11, Boehm 66
Tssr3589 11 78649149 to 78649151 2 - TSS region transcription start site region 3589
D11Bhm67 11 78649380 to 78649478 98 DNA segment DNA segment, Chr 11, Boehm 67
Tssr109412 11 78652682 to 78652685 3 - TSS region transcription start site region 109412
Tssr109413 11 78657065 to 78657069 4 - TSS region transcription start site region 109413
D11Seg43 11 78662097 to 78662261 164 DNA segment DNA segment, Chr 11, Segre 43
D11Bhm68 11 78662133 to 78662251 118 DNA segment DNA segment, Chr 11, Boehm 68
Tssr103331 11 78676619 to 78676624 5 + TSS region transcription start site region 103331
D11Ertd80e 11 78685077 to 78685306 229 DNA segment DNA segment, Chr 11, ERATO Doi 80, expressed
Tssr109414 11 78690009 to 78690013 4 - TSS region transcription start site region 109414
Tssr109415 11 78694217 to 78694221 4 - TSS region transcription start site region 109415
D11Bhm69 11 78695584 to 78695792 208 DNA segment DNA segment, Chr 11, Boehm 69
Cpgi3356 11 78695947 to 78696119 172 CpG island CpG island 3356
Tssr109416 11 78696204 to 78696224 20 - TSS region transcription start site region 109416
Tssr109417 11 78696496 to 78696541 45 - TSS region transcription start site region 109417
Cpgi3357 11 78696926 to 78697643 717 CpG island CpG island 3357
Tssr109418 11 78697283 to 78697290 7 - TSS region transcription start site region 109418
Tssr109419 11 78697370 to 78697475 105 - TSS region transcription start site region 109419
Tssr109420 11 78697585 to 78697605 20 - TSS region transcription start site region 109420
Cpgi3358 11 78700159 to 78700468 309 CpG island CpG island 3358
Gm11197 11 78708738 to 78709761 1023 - pseudogene predicted gene 11197
D11Bhm70 11 78709064 to 78709187 123 DNA segment DNA segment, Chr 11, Boehm 70
D11Bhm71 11 78716984 to 78717036 52 DNA segment DNA segment, Chr 11, Boehm 71
D11Bhm158 11 78724510 to 78724609 99 DNA segment DNA segment, Chr 11, Boehm 158
Ccnq 11 78750506 to 78751729 1223 - protein coding gene cyclin Q
Cpgi3359 11 78751327 to 78752084 757 CpG island CpG island 3359
Tssr109421 11 78751656 to 78751711 55 - TSS region transcription start site region 109421
Gm23840 11 78754426 to 78754522 96 - miRNA gene predicted gene, 23840
D11Bhm159 11 78758149 to 78758291 142 DNA segment DNA segment, Chr 11, Boehm 159
D11Mit117 11 78770210 to 78770319 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 117
D11Bhm72 11 78771280 to 78771385 105 DNA segment DNA segment, Chr 11, Boehm 72
Tssr3590 11 78772812 to 78772817 5 + TSS region transcription start site region 3590
D11Bhm73 11 78772893 to 78773103 210 DNA segment DNA segment, Chr 11, Boehm 73
D11Bhm74 11 78778210 to 78778427 217 DNA segment DNA segment, Chr 11, Boehm 74
D11Bhm76 11 78808262 to 78808592 330 DNA segment DNA segment, Chr 11, Boehm 76
D11Bhm77 11 78820263 to 78820542 279 DNA segment DNA segment, Chr 11, Boehm 77