Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78502076-78552199

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vtn 11 78499120 to 78502325 3205 + protein coding gene vitronectin
Tssr103321 11 78502173 to 78502194 21 + TSS region transcription start site region 103321
Tssr103322 11 78503498 to 78503503 5 + TSS region transcription start site region 103322
Sebox 11 78503513 to 78505081 1568 + protein coding gene SEBOX homeobox
Tmem199 11 78507055 to 78512168 5113 - protein coding gene transmembrane protein 199
Cpgi3353 11 78511822 to 78512772 950 CpG island CpG island 3353
Tssr109403 11 78512105 to 78512148 43 - TSS region transcription start site region 109403
Tssr103323 11 78512228 to 78512237 9 + TSS region transcription start site region 103323
Tssr103324 11 78512243 to 78512296 53 + TSS region transcription start site region 103324
Poldip2 11 78512296 to 78522736 10440 + protein coding gene polymerase (DNA-directed), delta interacting protein 2
Tssr103325 11 78512301 to 78512312 11 + TSS region transcription start site region 103325
D11Seg38 11 78513921 to 78514002 81 DNA segment DNA segment, Chr 11, Segre 38
D11Seg33 11 78514723 to 78514919 196 DNA segment DNA segment, Chr 11, Segre 33
Tnfaip1 11 78522850 to 78536260 13410 - protein coding gene tumor necrosis factor, alpha-induced protein 1 (endothelial)
D11Bhm59 11 78523712 to 78523911 199 DNA segment DNA segment, Chr 11, Boehm 59
D11Seg36 11 78525379 to 78525492 113 DNA segment DNA segment, Chr 11, Segre 36
D11Bhm60 11 78527076 to 78527199 123 DNA segment DNA segment, Chr 11, Boehm 60
Cpgi3354 11 78535705 to 78536864 1159 CpG island CpG island 3354
Tssr109404 11 78536107 to 78536215 108 - TSS region transcription start site region 109404
Tssr109405 11 78536216 to 78536227 11 - TSS region transcription start site region 109405
Tssr109406 11 78536235 to 78536248 13 - TSS region transcription start site region 109406
Tssr103326 11 78536355 to 78536368 13 + TSS region transcription start site region 103326
Tssr103327 11 78536393 to 78536492 99 + TSS region transcription start site region 103327
Ift20 11 78536436 to 78541473 5037 + protein coding gene intraflagellar transport 20
Tssr103328 11 78536499 to 78536514 15 + TSS region transcription start site region 103328
Tssr103329 11 78536530 to 78536541 11 + TSS region transcription start site region 103329
Tssr109407 11 78541470 to 78541474 4 - TSS region transcription start site region 109407
Tmem97 11 78541817 to 78550735 8918 - protein coding gene transmembrane protein 97
D11Bhm61 11 78543180 to 78543377 197 DNA segment DNA segment, Chr 11, Boehm 61
D11Seg37 11 78543508 to 78543608 100 DNA segment DNA segment, Chr 11, Segre 37
Cpgi3355 11 78550319 to 78551125 806 CpG island CpG island 3355
Tssr109408 11 78550674 to 78550749 75 - TSS region transcription start site region 109408
Tssr109409 11 78550758 to 78550771 13 - TSS region transcription start site region 109409
Tssr109410 11 78550801 to 78550812 11 - TSS region transcription start site region 109410
Tssr103330 11 78550921 to 78550960 39 + TSS region transcription start site region 103330