Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78247330-78722754

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218 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdf2 11 78245746 to 78255496 9750 + protein coding gene stromal cell derived factor 2
D11Seg12 11 78247901 to 78248123 222 DNA segment DNA segment, Chr 11, Segre 12
Gm18686 11 78249949 to 78250560 611 - pseudogene predicted gene, 18686
D11Seg13 11 78256782 to 78256960 178 DNA segment DNA segment, Chr 11, Segre 13
Cpgi3340 11 78261161 to 78262409 1248 CpG island CpG island 3340
Tssr103256 11 78261717 to 78261803 86 + TSS region transcription start site region 103256
2610507B11Rik 11 78261752 to 78290623 28871 + protein coding gene RIKEN cDNA 2610507B11 gene
Tssr103257 11 78262477 to 78262480 3 + TSS region transcription start site region 103257
Tssr103258 11 78262776 to 78262800 24 + TSS region transcription start site region 103258
Tssr103259 11 78263397 to 78263418 21 + TSS region transcription start site region 103259
Tssr103260 11 78266382 to 78266396 14 + TSS region transcription start site region 103260
D11Bhm48 11 78266504 to 78266657 153 DNA segment DNA segment, Chr 11, Boehm 48
Tssr103261 11 78266935 to 78266952 17 + TSS region transcription start site region 103261
Tssr3587 11 78268092 to 78268136 44 + TSS region transcription start site region 3587
D11Seg14 11 78276791 to 78276946 155 DNA segment DNA segment, Chr 11, Segre 14
Gm11192 11 78278738 to 78279066 328 - antisense lncRNA gene predicted gene 11192
Rskr 11 78290841 to 78296805 5964 + protein coding gene ribosomal protein S6 kinase related
Tssr103262 11 78290869 to 78290884 15 + TSS region transcription start site region 103262
Gm3948 11 78292848 to 78293956 1108 - lncRNA gene predicted gene 3948
Tssr103263 11 78297329 to 78297333 4 + TSS region transcription start site region 103263
Tssr109387 11 78298483 to 78298488 5 - TSS region transcription start site region 109387
D11Seg15 11 78299903 to 78300051 148 DNA segment DNA segment, Chr 11, Segre 15
Cpgi3341 11 78301329 to 78301974 645 CpG island CpG island 3341
Tssr109388 11 78301470 to 78301478 8 - TSS region transcription start site region 109388
Tssr109389 11 78301484 to 78301530 46 - TSS region transcription start site region 109389
Spag5 11 78301529 to 78322457 20928 + protein coding gene sperm associated antigen 5
Tssr103264 11 78301579 to 78301606 27 + TSS region transcription start site region 103264
Tssr103265 11 78301610 to 78301634 24 + TSS region transcription start site region 103265
D11Bhm49 11 78302631 to 78302873 242 DNA segment DNA segment, Chr 11, Boehm 49
D11Bhm50 11 78313658 to 78313840 182 DNA segment DNA segment, Chr 11, Boehm 50
Tssr103266 11 78315060 to 78315076 16 + TSS region transcription start site region 103266
D11Seg16 11 78319316 to 78319487 171 DNA segment DNA segment, Chr 11, Segre 16
Tssr103267 11 78322965 to 78322996 31 + TSS region transcription start site region 103267
Tssr103268 11 78323068 to 78323080 12 + TSS region transcription start site region 103268
Aldoc 11 78323073 to 78327781 4708 + protein coding gene aldolase C, fructose-bisphosphate
Tssr103269 11 78323087 to 78323112 25 + TSS region transcription start site region 103269
Tssr103270 11 78323120 to 78323145 25 + TSS region transcription start site region 103270
Tssr103271 11 78323151 to 78323166 15 + TSS region transcription start site region 103271
Tssr103272 11 78324225 to 78324236 11 + TSS region transcription start site region 103272
Tssr103273 11 78324253 to 78324272 19 + TSS region transcription start site region 103273
Tssr103274 11 78324287 to 78324301 14 + TSS region transcription start site region 103274
Tssr103275 11 78324303 to 78324395 92 + TSS region transcription start site region 103275
Tssr103276 11 78324404 to 78324415 11 + TSS region transcription start site region 103276
Tssr103277 11 78324466 to 78324479 13 + TSS region transcription start site region 103277
Tssr103278 11 78324636 to 78324648 12 + TSS region transcription start site region 103278
Tssr103279 11 78324673 to 78324689 16 + TSS region transcription start site region 103279
Tssr103280 11 78324713 to 78324762 49 + TSS region transcription start site region 103280
Tssr103281 11 78324891 to 78324930 39 + TSS region transcription start site region 103281
Tssr103282 11 78325933 to 78325943 10 + TSS region transcription start site region 103282
Tssr103283 11 78326304 to 78326332 28 + TSS region transcription start site region 103283
D11Seg17 11 78326341 to 78326495 154 DNA segment DNA segment, Chr 11, Segre 17
Cpgi3342 11 78328156 to 78329004 848 CpG island CpG island 3342
Pigs 11 78328422 to 78342776 14354 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class S
Tssr103284 11 78328425 to 78328472 47 + TSS region transcription start site region 103284
D11Bhm51 11 78336516 to 78336634 118 DNA segment DNA segment, Chr 11, Boehm 51
Tssr103285 11 78337811 to 78337829 18 + TSS region transcription start site region 103285
Tssr103286 11 78341837 to 78341886 49 + TSS region transcription start site region 103286
Cpgi3343 11 78343334 to 78344306 972 CpG island CpG island 3343
Tssr103287 11 78343437 to 78343444 7 + TSS region transcription start site region 103287
Tssr103288 11 78343475 to 78343526 51 + TSS region transcription start site region 103288
Unc119 11 78343495 to 78349164 5669 + protein coding gene unc-119 lipid binding chaperone
Tssr103289 11 78343530 to 78343541 11 + TSS region transcription start site region 103289
Tssr103290 11 78344533 to 78344536 3 + TSS region transcription start site region 103290
D11Seg21 11 78344963 to 78345095 132 DNA segment DNA segment, Chr 11, Segre 21
Tssr103291 11 78346683 to 78346709 26 + TSS region transcription start site region 103291
Tssr103292 11 78348170 to 78348200 30 + TSS region transcription start site region 103292
D11Bhm52 11 78353355 to 78353636 281 DNA segment DNA segment, Chr 11, Boehm 52
Foxn1 11 78357577 to 78386558 28981 - protein coding gene forkhead box N1
D11Seg20 11 78357760 to 78357929 169 DNA segment DNA segment, Chr 11, Segre 20
Cpgi3344 11 78358411 to 78359017 606 CpG island CpG island 3344
Tssr103293 11 78360730 to 78360777 47 + TSS region transcription start site region 103293
D11Seg19 11 78361473 to 78361608 135 DNA segment DNA segment, Chr 11, Segre 19
Gm30367 11 78372883 to 78376582 3699 + lncRNA gene predicted gene, 30367
Tssr109390 11 78379034 to 78379040 6 - TSS region transcription start site region 109390
D11Seg23 11 78384240 to 78384551 311 DNA segment DNA segment, Chr 11, Segre 23
Tssr109391 11 78386394 to 78386413 19 - TSS region transcription start site region 109391
Tssr109392 11 78386569 to 78386598 29 - TSS region transcription start site region 109392
Tssr109393 11 78386693 to 78386709 16 - TSS region transcription start site region 109393
Tssr103294 11 78394478 to 78394489 11 + TSS region transcription start site region 103294
Slc13a2os 11 78394485 to 78405657 11172 + antisense lncRNA gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand
Tssr103295 11 78394493 to 78394505 12 + TSS region transcription start site region 103295
Slc13a2 11 78397276 to 78422277 25001 - protein coding gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
Cpgi3345 11 78397394 to 78397715 321 CpG island CpG island 3345
Tssr109394 11 78400818 to 78400829 11 - TSS region transcription start site region 109394
Tssr3588 11 78401383 to 78401384 1 + TSS region transcription start site region 3588
Tssr109395 11 78404574 to 78404583 9 - TSS region transcription start site region 109395
Tssr109396 11 78404586 to 78404607 21 - TSS region transcription start site region 109396
Tssr109397 11 78404622 to 78404636 14 - TSS region transcription start site region 109397
Tssr103296 11 78404700 to 78404732 32 + TSS region transcription start site region 103296
D11Bhm54 11 78417497 to 78417754 257 DNA segment DNA segment, Chr 11, Boehm 54
D11Seg25 11 78417546 to 78417719 173 DNA segment DNA segment, Chr 11, Segre 25
D11Seg26 11 78419393 to 78419559 166 DNA segment DNA segment, Chr 11, Segre 26
Tssr109398 11 78422223 to 78422240 17 - TSS region transcription start site region 109398
Cpgi3346 11 78436012 to 78436189 177 CpG island CpG island 3346
Tssr109399 11 78437291 to 78437292 1 - TSS region transcription start site region 109399
D11Bhm55 11 78440991 to 78441051 60 DNA segment DNA segment, Chr 11, Boehm 55
Gm11195 11 78444107 to 78444901 794 + lincRNA gene predicted gene 11195
D11Seg29 11 78445871 to 78446036 165 DNA segment DNA segment, Chr 11, Segre 29
D11Bhm56 11 78445880 to 78446083 203 DNA segment DNA segment, Chr 11, Boehm 56
D11Seg28 11 78463835 to 78463965 130 DNA segment DNA segment, Chr 11, Segre 28
Cpgi3347 11 78465515 to 78466211 696 CpG island CpG island 3347
Tssr103297 11 78465583 to 78465596 13 + TSS region transcription start site region 103297
Tssr103298 11 78465667 to 78465689 22 + TSS region transcription start site region 103298
Tssr103299 11 78465697 to 78465735 38 + TSS region transcription start site region 103299
Slc46a1 11 78465701 to 78471945 6244 + protein coding gene solute carrier family 46, member 1
D11Seg30 11 78467723 to 78467871 148 DNA segment DNA segment, Chr 11, Segre 30
D11Bhm154 11 78472269 to 78472390 121 DNA segment DNA segment, Chr 11, Boehm 154
D11Bhm155 11 78472274 to 78472371 97 DNA segment DNA segment, Chr 11, Boehm 155
Sarm1 11 78472330 to 78497754 25424 - protein coding gene sterile alpha and HEAT/Armadillo motif containing 1
D11Seg32 11 78481161 to 78481340 179 DNA segment DNA segment, Chr 11, Segre 32
D11Bhm156 11 78481223 to 78481322 99 DNA segment DNA segment, Chr 11, Boehm 156
D11Bhm57 11 78482150 to 78482322 172 DNA segment DNA segment, Chr 11, Boehm 57
Cpgi3348 11 78483149 to 78483340 191 CpG island CpG island 3348
D11Bhm58 11 78485079 to 78485266 187 DNA segment DNA segment, Chr 11, Boehm 58
Cpgi3349 11 78487219 to 78488272 1053 CpG island CpG island 3349
Cpgi3350 11 78490412 to 78491341 929 CpG island CpG island 3350
Cpgi3351 11 78496898 to 78498058 1160 CpG island CpG island 3351
Tssr109400 11 78497525 to 78497539 14 - TSS region transcription start site region 109400
D11Seg34 11 78497568 to 78497690 122 DNA segment DNA segment, Chr 11, Segre 34
Tssr109401 11 78497693 to 78497730 37 - TSS region transcription start site region 109401
Tssr109402 11 78497734 to 78497793 59 - TSS region transcription start site region 109402
Tssr103300 11 78499009 to 78499022 13 + TSS region transcription start site region 103300
Tssr103301 11 78499036 to 78499041 5 + TSS region transcription start site region 103301
Tssr103302 11 78499043 to 78499065 22 + TSS region transcription start site region 103302
Tssr103303 11 78499066 to 78499080 14 + TSS region transcription start site region 103303
Tssr103304 11 78499087 to 78499123 36 + TSS region transcription start site region 103304
Vtn 11 78499120 to 78502325 3205 + protein coding gene vitronectin
Tssr103305 11 78499127 to 78499131 4 + TSS region transcription start site region 103305
Tssr103306 11 78499246 to 78499272 26 + TSS region transcription start site region 103306
Tssr103307 11 78499490 to 78499590 100 + TSS region transcription start site region 103307
Tssr103308 11 78499703 to 78499719 16 + TSS region transcription start site region 103308
Tssr103309 11 78499759 to 78499778 19 + TSS region transcription start site region 103309
Tssr103310 11 78499788 to 78499805 17 + TSS region transcription start site region 103310
Tssr103311 11 78499832 to 78499842 10 + TSS region transcription start site region 103311
Tssr103312 11 78499843 to 78499856 13 + TSS region transcription start site region 103312
Tssr103313 11 78499868 to 78499881 13 + TSS region transcription start site region 103313
Tssr103314 11 78500116 to 78500135 19 + TSS region transcription start site region 103314
Tssr103315 11 78500471 to 78500485 14 + TSS region transcription start site region 103315
D11Seg35 11 78500718 to 78500819 101 DNA segment DNA segment, Chr 11, Segre 35
Tssr103316 11 78501079 to 78501091 12 + TSS region transcription start site region 103316
Cpgi3352 11 78501581 to 78501989 408 CpG island CpG island 3352
Tssr103317 11 78501714 to 78501730 16 + TSS region transcription start site region 103317
Tssr103318 11 78501741 to 78501803 62 + TSS region transcription start site region 103318
Tssr103319 11 78501822 to 78501839 17 + TSS region transcription start site region 103319
Tssr103320 11 78501849 to 78501882 33 + TSS region transcription start site region 103320
Tssr103321 11 78502173 to 78502194 21 + TSS region transcription start site region 103321
Tssr103322 11 78503498 to 78503503 5 + TSS region transcription start site region 103322
Sebox 11 78503513 to 78505081 1568 + protein coding gene SEBOX homeobox
Tmem199 11 78507055 to 78512168 5113 - protein coding gene transmembrane protein 199
Cpgi3353 11 78511822 to 78512772 950 CpG island CpG island 3353
Tssr109403 11 78512105 to 78512148 43 - TSS region transcription start site region 109403
Tssr103323 11 78512228 to 78512237 9 + TSS region transcription start site region 103323
Tssr103324 11 78512243 to 78512296 53 + TSS region transcription start site region 103324
Poldip2 11 78512296 to 78522736 10440 + protein coding gene polymerase (DNA-directed), delta interacting protein 2
Tssr103325 11 78512301 to 78512312 11 + TSS region transcription start site region 103325
D11Seg38 11 78513921 to 78514002 81 DNA segment DNA segment, Chr 11, Segre 38
D11Seg33 11 78514723 to 78514919 196 DNA segment DNA segment, Chr 11, Segre 33
Tnfaip1 11 78522850 to 78536260 13410 - protein coding gene tumor necrosis factor, alpha-induced protein 1 (endothelial)
D11Bhm59 11 78523712 to 78523911 199 DNA segment DNA segment, Chr 11, Boehm 59
D11Seg36 11 78525379 to 78525492 113 DNA segment DNA segment, Chr 11, Segre 36
D11Bhm60 11 78527076 to 78527199 123 DNA segment DNA segment, Chr 11, Boehm 60
Cpgi3354 11 78535705 to 78536864 1159 CpG island CpG island 3354
Tssr109404 11 78536107 to 78536215 108 - TSS region transcription start site region 109404
Tssr109405 11 78536216 to 78536227 11 - TSS region transcription start site region 109405
Tssr109406 11 78536235 to 78536248 13 - TSS region transcription start site region 109406
Tssr103326 11 78536355 to 78536368 13 + TSS region transcription start site region 103326
Tssr103327 11 78536393 to 78536492 99 + TSS region transcription start site region 103327
Ift20 11 78536436 to 78541473 5037 + protein coding gene intraflagellar transport 20
Tssr103328 11 78536499 to 78536514 15 + TSS region transcription start site region 103328
Tssr103329 11 78536530 to 78536541 11 + TSS region transcription start site region 103329
Tssr109407 11 78541470 to 78541474 4 - TSS region transcription start site region 109407
Tmem97 11 78541817 to 78550735 8918 - protein coding gene transmembrane protein 97
D11Bhm61 11 78543180 to 78543377 197 DNA segment DNA segment, Chr 11, Boehm 61
D11Seg37 11 78543508 to 78543608 100 DNA segment DNA segment, Chr 11, Segre 37
Cpgi3355 11 78550319 to 78551125 806 CpG island CpG island 3355
Tssr109408 11 78550674 to 78550749 75 - TSS region transcription start site region 109408
Tssr109409 11 78550758 to 78550771 13 - TSS region transcription start site region 109409
Tssr109410 11 78550801 to 78550812 11 - TSS region transcription start site region 109410
Tssr103330 11 78550921 to 78550960 39 + TSS region transcription start site region 103330
D11Bhm157 11 78561174 to 78561305 131 DNA segment DNA segment, Chr 11, Boehm 157
D11Mit353 11 78561209 to 78561299 90 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 353
D11Bhm181e 11 78561319 to 78561600 281 - pseudogene DNA segment, Chr 11, Boehm 181, expressed
Gm22947 11 78561645 to 78561735 90 - snoRNA gene predicted gene, 22947
Nlk 11 78567168 to 78697373 130205 - protein coding gene nemo like kinase
D2Abb1e 11 78567228 to 78567440 212 DNA segment DNA segment, Chr 2, Abbott 1 expressed
D11Bhm62 11 78569243 to 78569458 215 DNA segment DNA segment, Chr 11, Boehm 62
Gm17235 11 78576237 to 78577352 1115 + pseudogene predicted gene 17235
D11Seg41 11 78581087 to 78581208 121 DNA segment DNA segment, Chr 11, Segre 41
Gm11196 11 78585161 to 78585555 394 - pseudogene predicted gene 11196
D11Bhm63 11 78603691 to 78603775 84 DNA segment DNA segment, Chr 11, Boehm 63
Tssr109411 11 78608169 to 78608173 4 - TSS region transcription start site region 109411
5830445D09Rik 11 78615534 to 78616561 1027 unclassified gene RIKEN cDNA 5830445D09 gene
D11Bhm64 11 78616366 to 78616442 76 DNA segment DNA segment, Chr 11, Boehm 64
D11Bhm65 11 78628139 to 78628300 161 DNA segment DNA segment, Chr 11, Boehm 65
D11Seg42 11 78632677 to 78633441 764 DNA segment DNA segment, Chr 11, Segre 42
D11Bhm66 11 78648656 to 78648714 58 DNA segment DNA segment, Chr 11, Boehm 66
Tssr3589 11 78649149 to 78649151 2 - TSS region transcription start site region 3589
D11Bhm67 11 78649380 to 78649478 98 DNA segment DNA segment, Chr 11, Boehm 67
Tssr109412 11 78652682 to 78652685 3 - TSS region transcription start site region 109412
Tssr109413 11 78657065 to 78657069 4 - TSS region transcription start site region 109413