Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78157463-78307602

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Traf4 11 78158499 to 78165589 7090 - protein coding gene TNF receptor associated factor 4
Tssr109372 11 78160910 to 78160929 19 - TSS region transcription start site region 109372
Cpgi3331 11 78164336 to 78166071 1735 CpG island CpG island 3331
D11Seg5 11 78164384 to 78164581 197 DNA segment DNA segment, Chr 11, Segre 5
Tssr109373 11 78165521 to 78165551 30 - TSS region transcription start site region 109373
Tssr103228 11 78165633 to 78165660 27 + TSS region transcription start site region 103228
Tssr103229 11 78165665 to 78165687 22 + TSS region transcription start site region 103229
Nek8 11 78166106 to 78176675 10569 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 8
Tssr109374 11 78166771 to 78166807 36 - TSS region transcription start site region 109374
Cpgi3332 11 78169285 to 78169483 198 CpG island CpG island 3332
D11Seg6 11 78171232 to 78171409 177 DNA segment DNA segment, Chr 11, Segre 6
Cpgi3333 11 78176430 to 78177299 869 CpG island CpG island 3333
Tssr109375 11 78176619 to 78176660 41 - TSS region transcription start site region 109375
Tlcd1 11 78176716 to 78180820 4104 + protein coding gene TLC domain containing 1
Tssr103230 11 78176735 to 78176761 26 + TSS region transcription start site region 103230
Tssr109376 11 78176964 to 78176978 14 - TSS region transcription start site region 109376
Tssr103231 11 78177229 to 78177235 6 + TSS region transcription start site region 103231
Cpgi3334 11 78177800 to 78179401 1601 CpG island CpG island 3334
Tssr103232 11 78178105 to 78178147 42 + TSS region transcription start site region 103232
Tssr109377 11 78178523 to 78178596 73 - TSS region transcription start site region 109377
Tssr103233 11 78178676 to 78178695 19 + TSS region transcription start site region 103233
Tssr103234 11 78178703 to 78178772 69 + TSS region transcription start site region 103234
Mir7653 11 78178827 to 78178887 60 + miRNA gene microRNA 7653
Tssr103235 11 78178958 to 78178986 28 + TSS region transcription start site region 103235
Tssr103236 11 78178989 to 78179002 13 + TSS region transcription start site region 103236
Rpl23a 11 78180935 to 78183584 2649 - protein coding gene ribosomal protein L23A
Snord42a 11 78181302 to 78181346 44 - snoRNA gene small nucleolar RNA, C/D box 42A
Snord4a 11 78181687 to 78181756 69 - snoRNA gene small nucleolar RNA, C/D box 4A
Snord42b 11 78183059 to 78183113 54 - snoRNA gene small nucleolar RNA, C/D box 42B
Cpgi3335 11 78183139 to 78183568 429 CpG island CpG island 3335
Tssr109378 11 78183172 to 78183216 44 - TSS region transcription start site region 109378
Tssr109379 11 78183551 to 78183574 23 - TSS region transcription start site region 109379
Cpgi3336 11 78188236 to 78189667 1431 CpG island CpG island 3336
Tssr103237 11 78188422 to 78188447 25 + TSS region transcription start site region 103237
Rab34 11 78188430 to 78192193 3763 + protein coding gene RAB34, member RAS oncogene family
Tssr103238 11 78188452 to 78188483 31 + TSS region transcription start site region 103238
Tssr103239 11 78188737 to 78188787 50 + TSS region transcription start site region 103239
Tssr103240 11 78188806 to 78188835 29 + TSS region transcription start site region 103240
Tssr103241 11 78189079 to 78189101 22 + TSS region transcription start site region 103241
Tssr103242 11 78189111 to 78189126 15 + TSS region transcription start site region 103242
Tssr109380 11 78189379 to 78189402 23 - TSS region transcription start site region 109380
Tssr103243 11 78189596 to 78189608 12 + TSS region transcription start site region 103243
Tssr109381 11 78190130 to 78190142 12 - TSS region transcription start site region 109381
D11Seg7 11 78190420 to 78190555 135 DNA segment DNA segment, Chr 11, Segre 7
Tssr103244 11 78193363 to 78193369 6 + TSS region transcription start site region 103244
Tssr103245 11 78193379 to 78193424 45 + TSS region transcription start site region 103245
Proca1 11 78193392 to 78205763 12371 + protein coding gene protein interacting with cyclin A1
Cpgi3337 11 78194456 to 78194999 543 CpG island CpG island 3337
Tssr103246 11 78194542 to 78194563 21 + TSS region transcription start site region 103246
Tssr103247 11 78194696 to 78194707 11 + TSS region transcription start site region 103247
Tssr103248 11 78194743 to 78194756 13 + TSS region transcription start site region 103248
Tssr103249 11 78194766 to 78194794 28 + TSS region transcription start site region 103249
Tssr103250 11 78194806 to 78194821 15 + TSS region transcription start site region 103250
Cpgi3338 11 78195074 to 78195266 192 CpG island CpG island 3338
D11Seg8 11 78200014 to 78200384 370 DNA segment DNA segment, Chr 11, Segre 8
D11Seg9 11 78205045 to 78205173 128 DNA segment DNA segment, Chr 11, Segre 9
Supt6 11 78206749 to 78245738 38989 - protein coding gene suppressor of Ty 6
Tssr109382 11 78232064 to 78232079 15 - TSS region transcription start site region 109382
D11Seg11 11 78232463 to 78232602 139 DNA segment DNA segment, Chr 11, Segre 11
Tssr109383 11 78233581 to 78233599 18 - TSS region transcription start site region 109383
Tssr103251 11 78244517 to 78244549 32 + TSS region transcription start site region 103251
Tssr103252 11 78245093 to 78245115 22 + TSS region transcription start site region 103252
Cpgi3339 11 78245332 to 78246293 961 CpG island CpG island 3339
Tssr103253 11 78245510 to 78245519 9 + TSS region transcription start site region 103253
Tssr109384 11 78245674 to 78245716 42 - TSS region transcription start site region 109384
Tssr103254 11 78245743 to 78245821 78 + TSS region transcription start site region 103254
Sdf2 11 78245746 to 78255496 9750 + protein coding gene stromal cell derived factor 2
Tssr109385 11 78245942 to 78245977 35 - TSS region transcription start site region 109385
Tssr103255 11 78245983 to 78246011 28 + TSS region transcription start site region 103255
Tssr109386 11 78246168 to 78246251 83 - TSS region transcription start site region 109386
D11Seg12 11 78247901 to 78248123 222 DNA segment DNA segment, Chr 11, Segre 12
Gm18686 11 78249949 to 78250560 611 - pseudogene predicted gene, 18686
D11Seg13 11 78256782 to 78256960 178 DNA segment DNA segment, Chr 11, Segre 13
Cpgi3340 11 78261161 to 78262409 1248 CpG island CpG island 3340
Tssr103256 11 78261717 to 78261803 86 + TSS region transcription start site region 103256
2610507B11Rik 11 78261752 to 78290623 28871 + protein coding gene RIKEN cDNA 2610507B11 gene
Tssr103257 11 78262477 to 78262480 3 + TSS region transcription start site region 103257
Tssr103258 11 78262776 to 78262800 24 + TSS region transcription start site region 103258
Tssr103259 11 78263397 to 78263418 21 + TSS region transcription start site region 103259
Tssr103260 11 78266382 to 78266396 14 + TSS region transcription start site region 103260
D11Bhm48 11 78266504 to 78266657 153 DNA segment DNA segment, Chr 11, Boehm 48
Tssr103261 11 78266935 to 78266952 17 + TSS region transcription start site region 103261
Tssr3587 11 78268092 to 78268136 44 + TSS region transcription start site region 3587
D11Seg14 11 78276791 to 78276946 155 DNA segment DNA segment, Chr 11, Segre 14
Gm11192 11 78278738 to 78279066 328 - antisense lncRNA gene predicted gene 11192
Rskr 11 78290841 to 78296805 5964 + protein coding gene ribosomal protein S6 kinase related
Tssr103262 11 78290869 to 78290884 15 + TSS region transcription start site region 103262
Gm3948 11 78292848 to 78293956 1108 - lncRNA gene predicted gene 3948
Tssr103263 11 78297329 to 78297333 4 + TSS region transcription start site region 103263
Tssr109387 11 78298483 to 78298488 5 - TSS region transcription start site region 109387
D11Seg15 11 78299903 to 78300051 148 DNA segment DNA segment, Chr 11, Segre 15
Cpgi3341 11 78301329 to 78301974 645 CpG island CpG island 3341
Tssr109388 11 78301470 to 78301478 8 - TSS region transcription start site region 109388
Tssr109389 11 78301484 to 78301530 46 - TSS region transcription start site region 109389
Spag5 11 78301529 to 78322457 20928 + protein coding gene sperm associated antigen 5
Tssr103264 11 78301579 to 78301606 27 + TSS region transcription start site region 103264
Tssr103265 11 78301610 to 78301634 24 + TSS region transcription start site region 103265
D11Bhm49 11 78302631 to 78302873 242 DNA segment DNA segment, Chr 11, Boehm 49