Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78054174-78174354

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Flot2 11 78037931 to 78060434 22503 + protein coding gene flotillin 2
Tssr103219 11 78069954 to 78069982 28 + TSS region transcription start site region 103219
Tssr103220 11 78071913 to 78071916 3 + TSS region transcription start site region 103220
Tssr103221 11 78072642 to 78072658 16 + TSS region transcription start site region 103221
Mir144 11 78073005 to 78073070 65 + miRNA gene microRNA 144
Mirc12 11 78073005 to 78073241 236 complex/cluster/region microRNA cluster 12, including Mir144 through Mir451a
Mir451a 11 78073170 to 78073241 71 + miRNA gene microRNA 451a
Mir451b 11 78073170 to 78073241 71 - miRNA gene microRNA 451b
Tssr103222 11 78073224 to 78073237 13 + TSS region transcription start site region 103222
Eral1 11 78073376 to 78080383 7007 - protein coding gene Era (G-protein)-like 1 (E. coli)
Tssr109369 11 78073745 to 78073754 9 - TSS region transcription start site region 109369
Cpgi3328 11 78079986 to 78080574 588 CpG island CpG island 3328
Tssr109370 11 78080360 to 78080387 27 - TSS region transcription start site region 109370
D11Seg1 11 78087165 to 78087261 96 DNA segment DNA segment, Chr 11, Segre 1
Cpgi3329 11 78094496 to 78095163 667 CpG island CpG island 3329
Fam222b 11 78094660 to 78156700 62040 + protein coding gene family with sequence similarity 222, member B
Tssr103223 11 78094667 to 78094678 11 + TSS region transcription start site region 103223
Tssr103224 11 78094682 to 78094696 14 + TSS region transcription start site region 103224
Tssr103225 11 78094726 to 78094737 11 + TSS region transcription start site region 103225
Tssr103226 11 78100272 to 78100276 4 + TSS region transcription start site region 103226
Tssr109371 11 78100848 to 78100861 13 - TSS region transcription start site region 109371
Tssr3585 11 78100885 to 78100897 12 - TSS region transcription start site region 3585
D11Seg2 11 78114174 to 78114354 180 DNA segment DNA segment, Chr 11, Segre 2
Cpgi3330 11 78115203 to 78115865 662 CpG island CpG island 3330
Tssr103227 11 78115565 to 78115601 36 + TSS region transcription start site region 103227
D11Bhm47 11 78120900 to 78121018 118 DNA segment DNA segment, Chr 11, Boehm 47
D11Seg3 11 78134950 to 78135112 162 DNA segment DNA segment, Chr 11, Segre 3
D11Seg4 11 78144095 to 78144316 221 DNA segment DNA segment, Chr 11, Segre 4
Gm12571 11 78149196 to 78149438 242 - pseudogene predicted gene 12571
Tssr3586 11 78149460 to 78149485 25 - TSS region transcription start site region 3586
D11Seg24 11 78152988 to 78153129 141 DNA segment DNA segment, Chr 11, Segre 24
Traf4 11 78158499 to 78165589 7090 - protein coding gene TNF receptor associated factor 4
Tssr109372 11 78160910 to 78160929 19 - TSS region transcription start site region 109372
Cpgi3331 11 78164336 to 78166071 1735 CpG island CpG island 3331
D11Seg5 11 78164384 to 78164581 197 DNA segment DNA segment, Chr 11, Segre 5
Tssr109373 11 78165521 to 78165551 30 - TSS region transcription start site region 109373
Tssr103228 11 78165633 to 78165660 27 + TSS region transcription start site region 103228
Tssr103229 11 78165665 to 78165687 22 + TSS region transcription start site region 103229
Nek8 11 78166106 to 78176675 10569 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 8
Tssr109374 11 78166771 to 78166807 36 - TSS region transcription start site region 109374
Cpgi3332 11 78169285 to 78169483 198 CpG island CpG island 3332
D11Seg6 11 78171232 to 78171409 177 DNA segment DNA segment, Chr 11, Segre 6