Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:77892372-78193092

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pipox 11 77880614 to 77893872 13258 - protein coding gene pipecolic acid oxidase
Tssr109362 11 77893007 to 77893023 16 - TSS region transcription start site region 109362
D11Bhm41 11 77893316 to 77893482 166 DNA segment DNA segment, Chr 11, Boehm 41
Tssr109363 11 77893780 to 77893838 58 - TSS region transcription start site region 109363
Tssr109364 11 77893843 to 77893854 11 - TSS region transcription start site region 109364
Tssr109365 11 77893855 to 77893856 1 - TSS region transcription start site region 109365
Tssr109366 11 77893859 to 77893870 11 - TSS region transcription start site region 109366
Gm29979 11 77896026 to 77907238 11212 + lncRNA gene predicted gene, 29979
D11Bhm42 11 77897982 to 77898101 119 DNA segment DNA segment, Chr 11, Boehm 42
Gm11190 11 77912127 to 77929288 17161 - lincRNA gene predicted gene 11190
Cpgi3323 11 77914671 to 77914942 271 CpG island CpG island 3323
Tssr109367 11 77923370 to 77923387 17 - TSS region transcription start site region 109367
Cpgi3324 11 77930530 to 77932329 1799 CpG island CpG island 3324
Sez6 11 77930839 to 77979052 48213 + protein coding gene seizure related gene 6
Tssr103201 11 77930872 to 77930934 62 + TSS region transcription start site region 103201
D11Bhm43 11 77938210 to 77938457 247 DNA segment DNA segment, Chr 11, Boehm 43
Tssr103202 11 77953431 to 77953442 11 + TSS region transcription start site region 103202
Tssr103203 11 77953467 to 77953479 12 + TSS region transcription start site region 103203
Tssr103204 11 77953508 to 77953523 15 + TSS region transcription start site region 103204
Tssr109368 11 77953690 to 77953704 14 - TSS region transcription start site region 109368
Tssr103205 11 77953853 to 77953863 10 + TSS region transcription start site region 103205
D11Bhm152 11 77961254 to 77961507 253 DNA segment DNA segment, Chr 11, Boehm 152
D11Bhm44 11 77971613 to 77971687 74 DNA segment DNA segment, Chr 11, Boehm 44
D11Bhm153 11 77975813 to 77975984 171 DNA segment DNA segment, Chr 11, Boehm 153
Tssr103206 11 77977749 to 77977757 8 + TSS region transcription start site region 103206
Tssr103207 11 77982159 to 77982162 3 + TSS region transcription start site region 103207
Cpgi3325 11 77982253 to 77984892 2639 CpG island CpG island 3325
Tssr103208 11 77982640 to 77982651 11 + TSS region transcription start site region 103208
Tssr103209 11 77982710 to 77982823 113 + TSS region transcription start site region 103209
Phf12 11 77982754 to 78030539 47785 + protein coding gene PHD finger protein 12
Tssr103210 11 77982825 to 77982842 17 + TSS region transcription start site region 103210
Tssr103211 11 77982877 to 77982898 21 + TSS region transcription start site region 103211
D11Bhm45 11 77983984 to 77984086 102 DNA segment DNA segment, Chr 11, Boehm 45
Tssr103212 11 77985753 to 77985758 5 + TSS region transcription start site region 103212
D11Bhm46 11 78025593 to 78025708 115 DNA segment DNA segment, Chr 11, Boehm 46
Dhrs13os 11 78030012 to 78032665 2653 - antisense lncRNA gene dehydrogenase/reductase (SDR family) member 13, opposite strand
Cpgi3326 11 78031889 to 78033067 1178 CpG island CpG island 3326
Tssr103213 11 78032274 to 78032310 36 + TSS region transcription start site region 103213
Dhrs13 11 78032286 to 78037866 5580 + protein coding gene dehydrogenase/reductase (SDR family) member 13
Tssr103214 11 78032312 to 78032343 31 + TSS region transcription start site region 103214
Tssr103215 11 78032346 to 78032366 20 + TSS region transcription start site region 103215
Cpgi3327 11 78037714 to 78038473 759 CpG island CpG island 3327
Tssr103216 11 78037910 to 78037922 12 + TSS region transcription start site region 103216
Flot2 11 78037931 to 78060434 22503 + protein coding gene flotillin 2
Tssr103217 11 78037935 to 78037955 20 + TSS region transcription start site region 103217
Tssr103218 11 78037959 to 78038042 83 + TSS region transcription start site region 103218
9230118H08Rik 11 78042372 to 78043092 720 unclassified gene RIKEN cDNA 9230118H08 gene
Tssr103219 11 78069954 to 78069982 28 + TSS region transcription start site region 103219
Tssr103220 11 78071913 to 78071916 3 + TSS region transcription start site region 103220
Tssr103221 11 78072642 to 78072658 16 + TSS region transcription start site region 103221
Mirc12 11 78073005 to 78073241 236 complex/cluster/region microRNA cluster 12, including Mir144 through Mir451a
Mir144 11 78073005 to 78073070 65 + miRNA gene microRNA 144
Mir451b 11 78073170 to 78073241 71 - miRNA gene microRNA 451b
Mir451a 11 78073170 to 78073241 71 + miRNA gene microRNA 451a
Tssr103222 11 78073224 to 78073237 13 + TSS region transcription start site region 103222
Eral1 11 78073376 to 78080383 7007 - protein coding gene Era (G-protein)-like 1 (E. coli)
Tssr109369 11 78073745 to 78073754 9 - TSS region transcription start site region 109369
Cpgi3328 11 78079986 to 78080574 588 CpG island CpG island 3328
Tssr109370 11 78080360 to 78080387 27 - TSS region transcription start site region 109370
D11Seg1 11 78087165 to 78087261 96 DNA segment DNA segment, Chr 11, Segre 1
Cpgi3329 11 78094496 to 78095163 667 CpG island CpG island 3329
Fam222b 11 78094660 to 78156700 62040 + protein coding gene family with sequence similarity 222, member B
Tssr103223 11 78094667 to 78094678 11 + TSS region transcription start site region 103223
Tssr103224 11 78094682 to 78094696 14 + TSS region transcription start site region 103224
Tssr103225 11 78094726 to 78094737 11 + TSS region transcription start site region 103225
Tssr103226 11 78100272 to 78100276 4 + TSS region transcription start site region 103226
Tssr109371 11 78100848 to 78100861 13 - TSS region transcription start site region 109371
Tssr3585 11 78100885 to 78100897 12 - TSS region transcription start site region 3585
D11Seg2 11 78114174 to 78114354 180 DNA segment DNA segment, Chr 11, Segre 2
Cpgi3330 11 78115203 to 78115865 662 CpG island CpG island 3330
Tssr103227 11 78115565 to 78115601 36 + TSS region transcription start site region 103227
D11Bhm47 11 78120900 to 78121018 118 DNA segment DNA segment, Chr 11, Boehm 47
D11Seg3 11 78134950 to 78135112 162 DNA segment DNA segment, Chr 11, Segre 3
D11Seg4 11 78144095 to 78144316 221 DNA segment DNA segment, Chr 11, Segre 4
Gm12571 11 78149196 to 78149438 242 - pseudogene predicted gene 12571
Tssr3586 11 78149460 to 78149485 25 - TSS region transcription start site region 3586
D11Seg24 11 78152988 to 78153129 141 DNA segment DNA segment, Chr 11, Segre 24
Traf4 11 78158499 to 78165589 7090 - protein coding gene TNF receptor associated factor 4
Tssr109372 11 78160910 to 78160929 19 - TSS region transcription start site region 109372
Cpgi3331 11 78164336 to 78166071 1735 CpG island CpG island 3331
D11Seg5 11 78164384 to 78164581 197 DNA segment DNA segment, Chr 11, Segre 5
Tssr109373 11 78165521 to 78165551 30 - TSS region transcription start site region 109373
Tssr103228 11 78165633 to 78165660 27 + TSS region transcription start site region 103228
Tssr103229 11 78165665 to 78165687 22 + TSS region transcription start site region 103229
Nek8 11 78166106 to 78176675 10569 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 8
Tssr109374 11 78166771 to 78166807 36 - TSS region transcription start site region 109374
Cpgi3332 11 78169285 to 78169483 198 CpG island CpG island 3332
D11Seg6 11 78171232 to 78171409 177 DNA segment DNA segment, Chr 11, Segre 6
Cpgi3333 11 78176430 to 78177299 869 CpG island CpG island 3333
Tssr109375 11 78176619 to 78176660 41 - TSS region transcription start site region 109375
Tlcd1 11 78176716 to 78180820 4104 + protein coding gene TLC domain containing 1
Tssr103230 11 78176735 to 78176761 26 + TSS region transcription start site region 103230
Tssr109376 11 78176964 to 78176978 14 - TSS region transcription start site region 109376
Tssr103231 11 78177229 to 78177235 6 + TSS region transcription start site region 103231
Cpgi3334 11 78177800 to 78179401 1601 CpG island CpG island 3334
Tssr103232 11 78178105 to 78178147 42 + TSS region transcription start site region 103232
Tssr109377 11 78178523 to 78178596 73 - TSS region transcription start site region 109377
Tssr103233 11 78178676 to 78178695 19 + TSS region transcription start site region 103233
Tssr103234 11 78178703 to 78178772 69 + TSS region transcription start site region 103234
Mir7653 11 78178827 to 78178887 60 + miRNA gene microRNA 7653
Tssr103235 11 78178958 to 78178986 28 + TSS region transcription start site region 103235
Tssr103236 11 78178989 to 78179002 13 + TSS region transcription start site region 103236
Rpl23a 11 78180935 to 78183584 2649 - protein coding gene ribosomal protein L23A
Snord42a 11 78181302 to 78181346 44 - snoRNA gene small nucleolar RNA, C/D box 42A
Snord4a 11 78181687 to 78181756 69 - snoRNA gene small nucleolar RNA, C/D box 4A
Snord42b 11 78183059 to 78183113 54 - snoRNA gene small nucleolar RNA, C/D box 42B
Cpgi3335 11 78183139 to 78183568 429 CpG island CpG island 3335
Tssr109378 11 78183172 to 78183216 44 - TSS region transcription start site region 109378
Tssr109379 11 78183551 to 78183574 23 - TSS region transcription start site region 109379
Cpgi3336 11 78188236 to 78189667 1431 CpG island CpG island 3336
Tssr103237 11 78188422 to 78188447 25 + TSS region transcription start site region 103237
Rab34 11 78188430 to 78192193 3763 + protein coding gene RAB34, member RAS oncogene family
Tssr103238 11 78188452 to 78188483 31 + TSS region transcription start site region 103238
Tssr103239 11 78188737 to 78188787 50 + TSS region transcription start site region 103239
Tssr103240 11 78188806 to 78188835 29 + TSS region transcription start site region 103240
Tssr103241 11 78189079 to 78189101 22 + TSS region transcription start site region 103241
Tssr103242 11 78189111 to 78189126 15 + TSS region transcription start site region 103242
Tssr109380 11 78189379 to 78189402 23 - TSS region transcription start site region 109380
Tssr103243 11 78189596 to 78189608 12 + TSS region transcription start site region 103243
Tssr109381 11 78190130 to 78190142 12 - TSS region transcription start site region 109381
D11Seg7 11 78190420 to 78190555 135 DNA segment DNA segment, Chr 11, Segre 7