Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:77604667-78584678

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421 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Taok1 11 77529162 to 77607815 78653 - protein coding gene TAO kinase 1
Cpgi3316 11 77607008 to 77608246 1238 CpG island CpG island 3316
Tssr109340 11 77607600 to 77607635 35 - TSS region transcription start site region 109340
Tssr109341 11 77607812 to 77607860 48 - TSS region transcription start site region 109341
Tssr103163 11 77607954 to 77607965 11 + TSS region transcription start site region 103163
Gm12732 11 77639854 to 77640033 179 + pseudogene predicted gene 12732
Gm12733 11 77644144 to 77644910 766 - pseudogene predicted gene 12733
Gm23132 11 77658576 to 77658707 131 - snoRNA gene predicted gene, 23132
D11Bhm37 11 77658930 to 77659007 77 DNA segment DNA segment, Chr 11, Boehm 37
D11Bhm149 11 77683047 to 77683243 196 DNA segment DNA segment, Chr 11, Boehm 149
Ltxs3 11 77683047 to 80855532 3172485 QTL lethal factor toxin susceptibility 3
Eae7 11 77683047 to 99486994 21803947 QTL experimental allergic encephalomyelitis susceptibility 7
D11Bhm150 11 77683437 to 77683562 125 DNA segment DNA segment, Chr 11, Boehm 150
Tssr103164 11 77685753 to 77685782 29 + TSS region transcription start site region 103164
Cpgi3317 11 77685772 to 77687944 2172 CpG island CpG island 3317
Nufip2 11 77685835 to 77717966 32131 + protein coding gene nuclear fragile X mental retardation protein interacting protein 2
Tssr109342 11 77685978 to 77686009 31 - TSS region transcription start site region 109342
Tssr103165 11 77686132 to 77686146 14 + TSS region transcription start site region 103165
Tssr103166 11 77686161 to 77686179 18 + TSS region transcription start site region 103166
Tssr103167 11 77686229 to 77686240 11 + TSS region transcription start site region 103167
Tssr103168 11 77687251 to 77687274 23 + TSS region transcription start site region 103168
Tssr103169 11 77693576 to 77693580 4 + TSS region transcription start site region 103169
D11Bhm38 11 77707944 to 77708145 201 DNA segment DNA segment, Chr 11, Boehm 38
Tssr103170 11 77710448 to 77710451 3 + TSS region transcription start site region 103170
Tssr103171 11 77710964 to 77710975 11 + TSS region transcription start site region 103171
Tssr103172 11 77711554 to 77711567 13 + TSS region transcription start site region 103172
Tssr103173 11 77713670 to 77713674 4 + TSS region transcription start site region 103173
Tssr103174 11 77715194 to 77715198 4 + TSS region transcription start site region 103174
Cryba1 11 77718615 to 77725283 6668 - protein coding gene crystallin, beta A1
Tssr109343 11 77718659 to 77718666 7 - TSS region transcription start site region 109343
Tssr103175 11 77718726 to 77718749 23 + TSS region transcription start site region 103175
Tssr109344 11 77718737 to 77718756 19 - TSS region transcription start site region 109344
Tssr109345 11 77718768 to 77718778 10 - TSS region transcription start site region 109345
Tssr109346 11 77718781 to 77718814 33 - TSS region transcription start site region 109346
Tssr103176 11 77718796 to 77718812 16 + TSS region transcription start site region 103176
Tssr109347 11 77718849 to 77718856 7 - TSS region transcription start site region 109347
Tssr109348 11 77718889 to 77718906 17 - TSS region transcription start site region 109348
Tssr109349 11 77719510 to 77719522 12 - TSS region transcription start site region 109349
Tssr109350 11 77720935 to 77720946 11 - TSS region transcription start site region 109350
Tssr109351 11 77720995 to 77721002 7 - TSS region transcription start site region 109351
Tssr103177 11 77722605 to 77722644 39 + TSS region transcription start site region 103177
Tssr109352 11 77722637 to 77722646 9 - TSS region transcription start site region 109352
Tssr109353 11 77722662 to 77722673 11 - TSS region transcription start site region 109353
Tssr109354 11 77722677 to 77722697 20 - TSS region transcription start site region 109354
Tssr109355 11 77725281 to 77725294 13 - TSS region transcription start site region 109355
D11Bhm151 11 77726328 to 77726544 216 DNA segment DNA segment, Chr 11, Boehm 151
Tssr103178 11 77747005 to 77747007 2 + TSS region transcription start site region 103178
Gm11191 11 77747041 to 77748041 1000 + pseudogene predicted gene 11191
D11Bhm39 11 77751344 to 77751425 81 DNA segment DNA segment, Chr 11, Boehm 39
Cpgi3318 11 77762773 to 77764207 1434 CpG island CpG island 3318
Myo18a 11 77763246 to 77865980 102734 + protein coding gene myosin XVIIIA
Tssr103179 11 77763269 to 77763339 70 + TSS region transcription start site region 103179
Tssr109356 11 77764047 to 77764060 13 - TSS region transcription start site region 109356
Tssr103180 11 77765588 to 77765643 55 + TSS region transcription start site region 103180
Tssr103181 11 77765652 to 77765665 13 + TSS region transcription start site region 103181
Cpgi3319 11 77766421 to 77766967 546 CpG island CpG island 3319
Tssr103182 11 77770881 to 77770885 4 + TSS region transcription start site region 103182
Gm10277 11 77785453 to 77787747 2294 - protein coding gene predicted gene 10277
Cpgi3320 11 77793170 to 77793585 415 CpG island CpG island 3320
Tssr103183 11 77801154 to 77801166 12 + TSS region transcription start site region 103183
Tssr109357 11 77801215 to 77801250 35 - TSS region transcription start site region 109357
Tssr103184 11 77801291 to 77801321 30 + TSS region transcription start site region 103184
Tssr103185 11 77801325 to 77801355 30 + TSS region transcription start site region 103185
Tssr103186 11 77802370 to 77802397 27 + TSS region transcription start site region 103186
Tssr103187 11 77802406 to 77802422 16 + TSS region transcription start site region 103187
Tssr103188 11 77802424 to 77802435 11 + TSS region transcription start site region 103188
Tssr103189 11 77811214 to 77811227 13 + TSS region transcription start site region 103189
D11Bhm40 11 77826320 to 77826450 130 DNA segment DNA segment, Chr 11, Boehm 40
Tssr103190 11 77838005 to 77838009 4 + TSS region transcription start site region 103190
Tssr103191 11 77838047 to 77838075 28 + TSS region transcription start site region 103191
Tssr103192 11 77838082 to 77838106 24 + TSS region transcription start site region 103192
Tssr103193 11 77838119 to 77838126 7 + TSS region transcription start site region 103193
Tssr103194 11 77838127 to 77838148 21 + TSS region transcription start site region 103194
Gm36875 11 77839685 to 77840771 1086 - lncRNA gene predicted gene, 36875
Tssr103195 11 77840254 to 77840264 10 + TSS region transcription start site region 103195
Tssr103196 11 77840268 to 77840298 30 + TSS region transcription start site region 103196
Tssr103197 11 77850722 to 77850733 11 + TSS region transcription start site region 103197
Tssr103198 11 77853606 to 77853654 48 + TSS region transcription start site region 103198
Cpgi3321 11 77859322 to 77860091 769 CpG island CpG island 3321
Cpgi3322 11 77876267 to 77876501 234 CpG island CpG island 3322
Tssr103199 11 77879579 to 77879595 16 + TSS region transcription start site region 103199
Pipox 11 77880614 to 77893872 13258 - protein coding gene pipecolic acid oxidase
Tssr109358 11 77880988 to 77881028 40 - TSS region transcription start site region 109358
Tssr109359 11 77881187 to 77881193 6 - TSS region transcription start site region 109359
Tssr109360 11 77882189 to 77882237 48 - TSS region transcription start site region 109360
Gm29932 11 77884262 to 77886813 2551 + lncRNA gene predicted gene, 29932
Tssr109361 11 77884545 to 77884564 19 - TSS region transcription start site region 109361
Tssr103200 11 77884678 to 77884695 17 + TSS region transcription start site region 103200
Tssr109362 11 77893007 to 77893023 16 - TSS region transcription start site region 109362
D11Bhm41 11 77893316 to 77893482 166 DNA segment DNA segment, Chr 11, Boehm 41
Tssr109363 11 77893780 to 77893838 58 - TSS region transcription start site region 109363
Tssr109364 11 77893843 to 77893854 11 - TSS region transcription start site region 109364
Tssr109365 11 77893855 to 77893856 1 - TSS region transcription start site region 109365
Tssr109366 11 77893859 to 77893870 11 - TSS region transcription start site region 109366
Gm29979 11 77896026 to 77907238 11212 + lncRNA gene predicted gene, 29979
D11Bhm42 11 77897982 to 77898101 119 DNA segment DNA segment, Chr 11, Boehm 42
Gm11190 11 77912127 to 77929288 17161 - lincRNA gene predicted gene 11190
Cpgi3323 11 77914671 to 77914942 271 CpG island CpG island 3323
Tssr109367 11 77923370 to 77923387 17 - TSS region transcription start site region 109367
Cpgi3324 11 77930530 to 77932329 1799 CpG island CpG island 3324
Sez6 11 77930839 to 77979052 48213 + protein coding gene seizure related gene 6
Tssr103201 11 77930872 to 77930934 62 + TSS region transcription start site region 103201
D11Bhm43 11 77938210 to 77938457 247 DNA segment DNA segment, Chr 11, Boehm 43
Tssr103202 11 77953431 to 77953442 11 + TSS region transcription start site region 103202
Tssr103203 11 77953467 to 77953479 12 + TSS region transcription start site region 103203
Tssr103204 11 77953508 to 77953523 15 + TSS region transcription start site region 103204
Tssr109368 11 77953690 to 77953704 14 - TSS region transcription start site region 109368
Tssr103205 11 77953853 to 77953863 10 + TSS region transcription start site region 103205
D11Bhm152 11 77961254 to 77961507 253 DNA segment DNA segment, Chr 11, Boehm 152
D11Bhm44 11 77971613 to 77971687 74 DNA segment DNA segment, Chr 11, Boehm 44
D11Bhm153 11 77975813 to 77975984 171 DNA segment DNA segment, Chr 11, Boehm 153
Tssr103206 11 77977749 to 77977757 8 + TSS region transcription start site region 103206
Tssr103207 11 77982159 to 77982162 3 + TSS region transcription start site region 103207
Cpgi3325 11 77982253 to 77984892 2639 CpG island CpG island 3325
Tssr103208 11 77982640 to 77982651 11 + TSS region transcription start site region 103208
Tssr103209 11 77982710 to 77982823 113 + TSS region transcription start site region 103209
Phf12 11 77982754 to 78030539 47785 + protein coding gene PHD finger protein 12
Tssr103210 11 77982825 to 77982842 17 + TSS region transcription start site region 103210
Tssr103211 11 77982877 to 77982898 21 + TSS region transcription start site region 103211
D11Bhm45 11 77983984 to 77984086 102 DNA segment DNA segment, Chr 11, Boehm 45
Tssr103212 11 77985753 to 77985758 5 + TSS region transcription start site region 103212
D11Bhm46 11 78025593 to 78025708 115 DNA segment DNA segment, Chr 11, Boehm 46
Dhrs13os 11 78030012 to 78032665 2653 - antisense lncRNA gene dehydrogenase/reductase (SDR family) member 13, opposite strand
Cpgi3326 11 78031889 to 78033067 1178 CpG island CpG island 3326
Tssr103213 11 78032274 to 78032310 36 + TSS region transcription start site region 103213
Dhrs13 11 78032286 to 78037866 5580 + protein coding gene dehydrogenase/reductase (SDR family) member 13
Tssr103214 11 78032312 to 78032343 31 + TSS region transcription start site region 103214
Tssr103215 11 78032346 to 78032366 20 + TSS region transcription start site region 103215
Cpgi3327 11 78037714 to 78038473 759 CpG island CpG island 3327
Tssr103216 11 78037910 to 78037922 12 + TSS region transcription start site region 103216
Flot2 11 78037931 to 78060434 22503 + protein coding gene flotillin 2
Tssr103217 11 78037935 to 78037955 20 + TSS region transcription start site region 103217
Tssr103218 11 78037959 to 78038042 83 + TSS region transcription start site region 103218
9230118H08Rik 11 78042372 to 78043092 720 unclassified gene RIKEN cDNA 9230118H08 gene
Tssr103219 11 78069954 to 78069982 28 + TSS region transcription start site region 103219
Tssr103220 11 78071913 to 78071916 3 + TSS region transcription start site region 103220
Tssr103221 11 78072642 to 78072658 16 + TSS region transcription start site region 103221
Mirc12 11 78073005 to 78073241 236 complex/cluster/region microRNA cluster 12, including Mir144 through Mir451a
Mir144 11 78073005 to 78073070 65 + miRNA gene microRNA 144
Mir451a 11 78073170 to 78073241 71 + miRNA gene microRNA 451a
Mir451b 11 78073170 to 78073241 71 - miRNA gene microRNA 451b
Tssr103222 11 78073224 to 78073237 13 + TSS region transcription start site region 103222
Eral1 11 78073376 to 78080383 7007 - protein coding gene Era (G-protein)-like 1 (E. coli)
Tssr109369 11 78073745 to 78073754 9 - TSS region transcription start site region 109369
Cpgi3328 11 78079986 to 78080574 588 CpG island CpG island 3328
Tssr109370 11 78080360 to 78080387 27 - TSS region transcription start site region 109370
D11Seg1 11 78087165 to 78087261 96 DNA segment DNA segment, Chr 11, Segre 1
Cpgi3329 11 78094496 to 78095163 667 CpG island CpG island 3329
Fam222b 11 78094660 to 78156700 62040 + protein coding gene family with sequence similarity 222, member B
Tssr103223 11 78094667 to 78094678 11 + TSS region transcription start site region 103223
Tssr103224 11 78094682 to 78094696 14 + TSS region transcription start site region 103224
Tssr103225 11 78094726 to 78094737 11 + TSS region transcription start site region 103225
Tssr103226 11 78100272 to 78100276 4 + TSS region transcription start site region 103226
Tssr109371 11 78100848 to 78100861 13 - TSS region transcription start site region 109371
Tssr3585 11 78100885 to 78100897 12 - TSS region transcription start site region 3585
D11Seg2 11 78114174 to 78114354 180 DNA segment DNA segment, Chr 11, Segre 2
Cpgi3330 11 78115203 to 78115865 662 CpG island CpG island 3330
Tssr103227 11 78115565 to 78115601 36 + TSS region transcription start site region 103227
D11Bhm47 11 78120900 to 78121018 118 DNA segment DNA segment, Chr 11, Boehm 47
D11Seg3 11 78134950 to 78135112 162 DNA segment DNA segment, Chr 11, Segre 3
D11Seg4 11 78144095 to 78144316 221 DNA segment DNA segment, Chr 11, Segre 4
Gm12571 11 78149196 to 78149438 242 - pseudogene predicted gene 12571
Tssr3586 11 78149460 to 78149485 25 - TSS region transcription start site region 3586
D11Seg24 11 78152988 to 78153129 141 DNA segment DNA segment, Chr 11, Segre 24
Traf4 11 78158499 to 78165589 7090 - protein coding gene TNF receptor associated factor 4
Tssr109372 11 78160910 to 78160929 19 - TSS region transcription start site region 109372
Cpgi3331 11 78164336 to 78166071 1735 CpG island CpG island 3331
D11Seg5 11 78164384 to 78164581 197 DNA segment DNA segment, Chr 11, Segre 5
Tssr109373 11 78165521 to 78165551 30 - TSS region transcription start site region 109373
Tssr103228 11 78165633 to 78165660 27 + TSS region transcription start site region 103228
Tssr103229 11 78165665 to 78165687 22 + TSS region transcription start site region 103229
Nek8 11 78166106 to 78176675 10569 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 8
Tssr109374 11 78166771 to 78166807 36 - TSS region transcription start site region 109374
Cpgi3332 11 78169285 to 78169483 198 CpG island CpG island 3332
D11Seg6 11 78171232 to 78171409 177 DNA segment DNA segment, Chr 11, Segre 6
Cpgi3333 11 78176430 to 78177299 869 CpG island CpG island 3333
Tssr109375 11 78176619 to 78176660 41 - TSS region transcription start site region 109375
Tlcd1 11 78176716 to 78180820 4104 + protein coding gene TLC domain containing 1
Tssr103230 11 78176735 to 78176761 26 + TSS region transcription start site region 103230
Tssr109376 11 78176964 to 78176978 14 - TSS region transcription start site region 109376
Tssr103231 11 78177229 to 78177235 6 + TSS region transcription start site region 103231
Cpgi3334 11 78177800 to 78179401 1601 CpG island CpG island 3334
Tssr103232 11 78178105 to 78178147 42 + TSS region transcription start site region 103232
Tssr109377 11 78178523 to 78178596 73 - TSS region transcription start site region 109377
Tssr103233 11 78178676 to 78178695 19 + TSS region transcription start site region 103233
Tssr103234 11 78178703 to 78178772 69 + TSS region transcription start site region 103234
Mir7653 11 78178827 to 78178887 60 + miRNA gene microRNA 7653
Tssr103235 11 78178958 to 78178986 28 + TSS region transcription start site region 103235
Tssr103236 11 78178989 to 78179002 13 + TSS region transcription start site region 103236
Rpl23a 11 78180935 to 78183584 2649 - protein coding gene ribosomal protein L23A
Snord42a 11 78181302 to 78181346 44 - snoRNA gene small nucleolar RNA, C/D box 42A
Snord4a 11 78181687 to 78181756 69 - snoRNA gene small nucleolar RNA, C/D box 4A
Snord42b 11 78183059 to 78183113 54 - snoRNA gene small nucleolar RNA, C/D box 42B
Cpgi3335 11 78183139 to 78183568 429 CpG island CpG island 3335
Tssr109378 11 78183172 to 78183216 44 - TSS region transcription start site region 109378
Tssr109379 11 78183551 to 78183574 23 - TSS region transcription start site region 109379
Cpgi3336 11 78188236 to 78189667 1431 CpG island CpG island 3336
Tssr103237 11 78188422 to 78188447 25 + TSS region transcription start site region 103237
Rab34 11 78188430 to 78192193 3763 + protein coding gene RAB34, member RAS oncogene family
Tssr103238 11 78188452 to 78188483 31 + TSS region transcription start site region 103238