Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:77080057-77600061

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344
Gm12345 11 77149628 to 77150525 897 + pseudogene predicted gene 12345
Gm45027 11 77200125 to 77200819 694 - lincRNA gene predicted gene 45027
Tssr109322 11 77200817 to 77200821 4 - TSS region transcription start site region 109322
Tssr109323 11 77200924 to 77200944 20 - TSS region transcription start site region 109323
Tssr109324 11 77200948 to 77200955 7 - TSS region transcription start site region 109324
Tssr3584 11 77200960 to 77200963 3 - TSS region transcription start site region 3584
Tssr109325 11 77200973 to 77200989 16 - TSS region transcription start site region 109325
Tssr109326 11 77200999 to 77201004 5 - TSS region transcription start site region 109326
6330571C24Rik 11 77211976 to 77213205 1229 lncRNA gene RIKEN cDNA 6330571C24 gene
Cpgi3303 11 77215693 to 77217040 1347 CpG island CpG island 3303
Tssr103125 11 77216171 to 77216178 7 + TSS region transcription start site region 103125
Tssr103126 11 77216180 to 77216279 99 + TSS region transcription start site region 103126
Ssh2 11 77216287 to 77460220 243933 + protein coding gene slingshot protein phosphatase 2
Tssr103127 11 77235477 to 77235481 4 + TSS region transcription start site region 103127
Gm24989 11 77244928 to 77245015 87 - snoRNA gene predicted gene, 24989
Tssr103128 11 77293438 to 77293439 1 + TSS region transcription start site region 103128
Gm12346 11 77293444 to 77295898 2454 + pseudogene predicted gene 12346
Tssr103129 11 77293995 to 77293999 4 + TSS region transcription start site region 103129
Tssr103130 11 77294035 to 77294081 46 + TSS region transcription start site region 103130
Tssr103131 11 77340057 to 77340061 4 + TSS region transcription start site region 103131
Cpgi3304 11 77347993 to 77348743 750 CpG island CpG island 3304
Tssr103132 11 77348259 to 77348269 10 + TSS region transcription start site region 103132
Tssr103133 11 77348272 to 77348292 20 + TSS region transcription start site region 103133
Tssr103134 11 77349268 to 77349279 11 + TSS region transcription start site region 103134
Tssr109327 11 77386301 to 77386315 14 - TSS region transcription start site region 109327
Gm30976 11 77398276 to 77406786 8510 - pseudogene predicted gene, 30976
Tssr103135 11 77456432 to 77456444 12 + TSS region transcription start site region 103135
Cpgi3305 11 77462030 to 77463221 1191 CpG island CpG island 3305
Tssr103136 11 77462325 to 77462421 96 + TSS region transcription start site region 103136
Coro6 11 77462411 to 77470484 8073 + protein coding gene coronin 6
Tssr103137 11 77462426 to 77462438 12 + TSS region transcription start site region 103137
Tssr103138 11 77462558 to 77462565 7 + TSS region transcription start site region 103138
Tssr103139 11 77462567 to 77462596 29 + TSS region transcription start site region 103139
Tssr103140 11 77462605 to 77462652 47 + TSS region transcription start site region 103140
Cpgi3306 11 77466935 to 77468108 1173 CpG island CpG island 3306
Cpgi3307 11 77469158 to 77469593 435 CpG island CpG island 3307
Tssr103141 11 77469850 to 77469864 14 + TSS region transcription start site region 103141
Tssr103142 11 77469880 to 77469889 9 + TSS region transcription start site region 103142
Tssr103143 11 77469999 to 77470016 17 + TSS region transcription start site region 103143
Ankrd13b 11 77470485 to 77489678 19193 - protein coding gene ankyrin repeat domain 13b
Cpgi3308 11 77471050 to 77472086 1036 CpG island CpG island 3308
Cpgi3309 11 77472511 to 77472920 409 CpG island CpG island 3309
Cpgi3310 11 77488885 to 77490386 1501 CpG island CpG island 3310
Tssr109328 11 77489647 to 77489654 7 - TSS region transcription start site region 109328
Tssr109329 11 77489670 to 77489687 17 - TSS region transcription start site region 109329
Tssr109330 11 77489802 to 77489809 7 - TSS region transcription start site region 109330
2210008F06Rik 11 77489854 to 77491409 1555 + lincRNA gene RIKEN cDNA 2210008F06 gene
Tssr109331 11 77489979 to 77489990 11 - TSS region transcription start site region 109331
Tssr109332 11 77490010 to 77490055 45 - TSS region transcription start site region 109332
Cpgi3311 11 77491702 to 77491985 283 CpG island CpG island 3311
Cpgi3312 11 77492684 to 77494402 1718 CpG island CpG island 3312
Tssr103144 11 77493194 to 77493213 19 + TSS region transcription start site region 103144
Tssr103145 11 77493265 to 77493302 37 + TSS region transcription start site region 103145
Tssr103146 11 77493311 to 77493335 24 + TSS region transcription start site region 103146
Tssr103147 11 77493368 to 77493394 26 + TSS region transcription start site region 103147
Tssr103148 11 77493408 to 77493487 79 + TSS region transcription start site region 103148
Git1 11 77493562 to 77507786 14224 + protein coding gene GIT ArfGAP 1
Tssr103149 11 77496333 to 77496340 7 + TSS region transcription start site region 103149
Tssr103150 11 77498184 to 77498190 6 + TSS region transcription start site region 103150
Tssr103151 11 77500887 to 77500927 40 + TSS region transcription start site region 103151
Tssr103152 11 77503800 to 77503835 35 + TSS region transcription start site region 103152
Tssr103153 11 77503856 to 77503869 13 + TSS region transcription start site region 103153
Tssr103154 11 77503876 to 77503886 10 + TSS region transcription start site region 103154
Tssr103155 11 77505548 to 77505559 11 + TSS region transcription start site region 103155
Tssr109333 11 77506703 to 77506713 10 - TSS region transcription start site region 109333
Tssr109334 11 77506785 to 77506799 14 - TSS region transcription start site region 109334
Tssr103156 11 77506922 to 77506952 30 + TSS region transcription start site region 103156
Tssr103157 11 77507158 to 77507171 13 + TSS region transcription start site region 103157
Tssr103158 11 77507310 to 77507332 22 + TSS region transcription start site region 103158
Trp53i13 11 77508099 to 77515921 7822 - protein coding gene transformation related protein 53 inducible protein 13
Cpgi3313 11 77508143 to 77508727 584 CpG island CpG island 3313
Cpgi3314 11 77512721 to 77513962 1241 CpG island CpG island 3314
Tssr109335 11 77513245 to 77513304 59 - TSS region transcription start site region 109335
Tssr109336 11 77513335 to 77513348 13 - TSS region transcription start site region 109336
Tssr103159 11 77513511 to 77513537 26 + TSS region transcription start site region 103159
Cpgi3315 11 77514502 to 77516093 1591 CpG island CpG island 3315
Tssr103160 11 77515104 to 77515128 24 + TSS region transcription start site region 103160
Abhd15 11 77515117 to 77520628 5511 + protein coding gene abhydrolase domain containing 15
Gm10392 11 77516660 to 77519198 2538 - protein coding gene predicted gene 10392
Tssr103161 11 77518566 to 77518576 10 + TSS region transcription start site region 103161
Tssr109337 11 77519186 to 77519218 32 - TSS region transcription start site region 109337
Tssr103162 11 77521183 to 77521187 4 + TSS region transcription start site region 103162
Taok1 11 77529162 to 77607815 78653 - protein coding gene TAO kinase 1
Tssr109338 11 77530274 to 77530277 3 - TSS region transcription start site region 109338
Gm12734 11 77542133 to 77543077 944 + pseudogene predicted gene 12734
Tssr109339 11 77553831 to 77553835 4 - TSS region transcription start site region 109339