Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:77029928-77460015

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc6a4 11 76998603 to 77032340 33737 + protein coding gene solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Nsrp1 11 77044292 to 77078435 34143 - protein coding gene nuclear speckle regulatory protein 1
Tssr109319 11 77046242 to 77046254 12 - TSS region transcription start site region 109319
Tssr109320 11 77046467 to 77046485 18 - TSS region transcription start site region 109320
Gm22772 11 77052947 to 77053067 120 + snoRNA gene predicted gene, 22772
D11Mit280 11 77053489 to 77053598 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 280
Cpgi3302 11 77077968 to 77078769 801 CpG island CpG island 3302
Mir423 11 77078064 to 77078172 108 - miRNA gene microRNA 423
Tssr109321 11 77078404 to 77078442 38 - TSS region transcription start site region 109321
Tssr103124 11 77078476 to 77078505 29 + TSS region transcription start site region 103124
Tssr3582 11 77078508 to 77078528 20 + TSS region transcription start site region 3582
Tssr3583 11 77078568 to 77078580 12 + TSS region transcription start site region 3583
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344
Gm12345 11 77149628 to 77150525 897 + pseudogene predicted gene 12345
Gm45027 11 77200125 to 77200819 694 - lincRNA gene predicted gene 45027
Tssr109322 11 77200817 to 77200821 4 - TSS region transcription start site region 109322
Tssr109323 11 77200924 to 77200944 20 - TSS region transcription start site region 109323
Tssr109324 11 77200948 to 77200955 7 - TSS region transcription start site region 109324
Tssr3584 11 77200960 to 77200963 3 - TSS region transcription start site region 3584
Tssr109325 11 77200973 to 77200989 16 - TSS region transcription start site region 109325
Tssr109326 11 77200999 to 77201004 5 - TSS region transcription start site region 109326
6330571C24Rik 11 77211976 to 77213205 1229 lncRNA gene RIKEN cDNA 6330571C24 gene
Cpgi3303 11 77215693 to 77217040 1347 CpG island CpG island 3303
Tssr103125 11 77216171 to 77216178 7 + TSS region transcription start site region 103125
Tssr103126 11 77216180 to 77216279 99 + TSS region transcription start site region 103126
Ssh2 11 77216287 to 77460220 243933 + protein coding gene slingshot protein phosphatase 2
Tssr103127 11 77235477 to 77235481 4 + TSS region transcription start site region 103127
Gm24989 11 77244928 to 77245015 87 - snoRNA gene predicted gene, 24989
Tssr103128 11 77293438 to 77293439 1 + TSS region transcription start site region 103128
Gm12346 11 77293444 to 77295898 2454 + pseudogene predicted gene 12346
Tssr103129 11 77293995 to 77293999 4 + TSS region transcription start site region 103129
Tssr103130 11 77294035 to 77294081 46 + TSS region transcription start site region 103130
Tssr103131 11 77340057 to 77340061 4 + TSS region transcription start site region 103131
Cpgi3304 11 77347993 to 77348743 750 CpG island CpG island 3304
Tssr103132 11 77348259 to 77348269 10 + TSS region transcription start site region 103132
Tssr103133 11 77348272 to 77348292 20 + TSS region transcription start site region 103133
Tssr103134 11 77349268 to 77349279 11 + TSS region transcription start site region 103134
Tssr109327 11 77386301 to 77386315 14 - TSS region transcription start site region 109327
Gm30976 11 77398276 to 77406786 8510 - pseudogene predicted gene, 30976
Tssr103135 11 77456432 to 77456444 12 + TSS region transcription start site region 103135