Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:77021050-77922086

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc6a4 11 76998603 to 77032340 33737 + protein coding gene solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Nsrp1 11 77044292 to 77078435 34143 - protein coding gene nuclear speckle regulatory protein 1
Tssr109319 11 77046242 to 77046254 12 - TSS region transcription start site region 109319
Tssr109320 11 77046467 to 77046485 18 - TSS region transcription start site region 109320
Gm22772 11 77052947 to 77053067 120 + snoRNA gene predicted gene, 22772
D11Mit280 11 77053489 to 77053598 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 280
Cpgi3302 11 77077968 to 77078769 801 CpG island CpG island 3302
Mir423 11 77078064 to 77078172 108 - miRNA gene microRNA 423
Tssr109321 11 77078404 to 77078442 38 - TSS region transcription start site region 109321
Tssr103124 11 77078476 to 77078505 29 + TSS region transcription start site region 103124
Tssr3582 11 77078508 to 77078528 20 + TSS region transcription start site region 3582
Tssr3583 11 77078568 to 77078580 12 + TSS region transcription start site region 3583
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344
Gm12345 11 77149628 to 77150525 897 + pseudogene predicted gene 12345
Gm45027 11 77200125 to 77200819 694 - lincRNA gene predicted gene 45027
Tssr109322 11 77200817 to 77200821 4 - TSS region transcription start site region 109322
Tssr109323 11 77200924 to 77200944 20 - TSS region transcription start site region 109323
Tssr109324 11 77200948 to 77200955 7 - TSS region transcription start site region 109324
Tssr3584 11 77200960 to 77200963 3 - TSS region transcription start site region 3584
Tssr109325 11 77200973 to 77200989 16 - TSS region transcription start site region 109325
Tssr109326 11 77200999 to 77201004 5 - TSS region transcription start site region 109326
6330571C24Rik 11 77211976 to 77213205 1229 lncRNA gene RIKEN cDNA 6330571C24 gene
Cpgi3303 11 77215693 to 77217040 1347 CpG island CpG island 3303
Tssr103125 11 77216171 to 77216178 7 + TSS region transcription start site region 103125
Tssr103126 11 77216180 to 77216279 99 + TSS region transcription start site region 103126
Ssh2 11 77216287 to 77460220 243933 + protein coding gene slingshot protein phosphatase 2
Tssr103127 11 77235477 to 77235481 4 + TSS region transcription start site region 103127
Gm24989 11 77244928 to 77245015 87 - snoRNA gene predicted gene, 24989
Tssr103128 11 77293438 to 77293439 1 + TSS region transcription start site region 103128
Gm12346 11 77293444 to 77295898 2454 + pseudogene predicted gene 12346
Tssr103129 11 77293995 to 77293999 4 + TSS region transcription start site region 103129
Tssr103130 11 77294035 to 77294081 46 + TSS region transcription start site region 103130
Tssr103131 11 77340057 to 77340061 4 + TSS region transcription start site region 103131
Cpgi3304 11 77347993 to 77348743 750 CpG island CpG island 3304
Tssr103132 11 77348259 to 77348269 10 + TSS region transcription start site region 103132
Tssr103133 11 77348272 to 77348292 20 + TSS region transcription start site region 103133
Tssr103134 11 77349268 to 77349279 11 + TSS region transcription start site region 103134
Tssr109327 11 77386301 to 77386315 14 - TSS region transcription start site region 109327
Gm30976 11 77398276 to 77406786 8510 - pseudogene predicted gene, 30976
Tssr103135 11 77456432 to 77456444 12 + TSS region transcription start site region 103135
Cpgi3305 11 77462030 to 77463221 1191 CpG island CpG island 3305
Tssr103136 11 77462325 to 77462421 96 + TSS region transcription start site region 103136
Coro6 11 77462411 to 77470484 8073 + protein coding gene coronin 6
Tssr103137 11 77462426 to 77462438 12 + TSS region transcription start site region 103137
Tssr103138 11 77462558 to 77462565 7 + TSS region transcription start site region 103138
Tssr103139 11 77462567 to 77462596 29 + TSS region transcription start site region 103139
Tssr103140 11 77462605 to 77462652 47 + TSS region transcription start site region 103140
Cpgi3306 11 77466935 to 77468108 1173 CpG island CpG island 3306
Cpgi3307 11 77469158 to 77469593 435 CpG island CpG island 3307
Tssr103141 11 77469850 to 77469864 14 + TSS region transcription start site region 103141
Tssr103142 11 77469880 to 77469889 9 + TSS region transcription start site region 103142
Tssr103143 11 77469999 to 77470016 17 + TSS region transcription start site region 103143
Ankrd13b 11 77470485 to 77489678 19193 - protein coding gene ankyrin repeat domain 13b
Cpgi3308 11 77471050 to 77472086 1036 CpG island CpG island 3308
Cpgi3309 11 77472511 to 77472920 409 CpG island CpG island 3309
Cpgi3310 11 77488885 to 77490386 1501 CpG island CpG island 3310
Tssr109328 11 77489647 to 77489654 7 - TSS region transcription start site region 109328
Tssr109329 11 77489670 to 77489687 17 - TSS region transcription start site region 109329
Tssr109330 11 77489802 to 77489809 7 - TSS region transcription start site region 109330
2210008F06Rik 11 77489854 to 77491409 1555 + lincRNA gene RIKEN cDNA 2210008F06 gene
Tssr109331 11 77489979 to 77489990 11 - TSS region transcription start site region 109331
Tssr109332 11 77490010 to 77490055 45 - TSS region transcription start site region 109332
Cpgi3311 11 77491702 to 77491985 283 CpG island CpG island 3311
Cpgi3312 11 77492684 to 77494402 1718 CpG island CpG island 3312
Tssr103144 11 77493194 to 77493213 19 + TSS region transcription start site region 103144
Tssr103145 11 77493265 to 77493302 37 + TSS region transcription start site region 103145
Tssr103146 11 77493311 to 77493335 24 + TSS region transcription start site region 103146
Tssr103147 11 77493368 to 77493394 26 + TSS region transcription start site region 103147
Tssr103148 11 77493408 to 77493487 79 + TSS region transcription start site region 103148
Git1 11 77493562 to 77507786 14224 + protein coding gene GIT ArfGAP 1
Tssr103149 11 77496333 to 77496340 7 + TSS region transcription start site region 103149
Tssr103150 11 77498184 to 77498190 6 + TSS region transcription start site region 103150
Tssr103151 11 77500887 to 77500927 40 + TSS region transcription start site region 103151
Tssr103152 11 77503800 to 77503835 35 + TSS region transcription start site region 103152
Tssr103153 11 77503856 to 77503869 13 + TSS region transcription start site region 103153
Tssr103154 11 77503876 to 77503886 10 + TSS region transcription start site region 103154
Tssr103155 11 77505548 to 77505559 11 + TSS region transcription start site region 103155
Tssr109333 11 77506703 to 77506713 10 - TSS region transcription start site region 109333
Tssr109334 11 77506785 to 77506799 14 - TSS region transcription start site region 109334
Tssr103156 11 77506922 to 77506952 30 + TSS region transcription start site region 103156
Tssr103157 11 77507158 to 77507171 13 + TSS region transcription start site region 103157
Tssr103158 11 77507310 to 77507332 22 + TSS region transcription start site region 103158
Trp53i13 11 77508099 to 77515921 7822 - protein coding gene transformation related protein 53 inducible protein 13
Cpgi3313 11 77508143 to 77508727 584 CpG island CpG island 3313
Cpgi3314 11 77512721 to 77513962 1241 CpG island CpG island 3314
Tssr109335 11 77513245 to 77513304 59 - TSS region transcription start site region 109335
Tssr109336 11 77513335 to 77513348 13 - TSS region transcription start site region 109336
Tssr103159 11 77513511 to 77513537 26 + TSS region transcription start site region 103159
Cpgi3315 11 77514502 to 77516093 1591 CpG island CpG island 3315
Tssr103160 11 77515104 to 77515128 24 + TSS region transcription start site region 103160
Abhd15 11 77515117 to 77520628 5511 + protein coding gene abhydrolase domain containing 15
Gm10392 11 77516660 to 77519198 2538 - protein coding gene predicted gene 10392
Tssr103161 11 77518566 to 77518576 10 + TSS region transcription start site region 103161
Tssr109337 11 77519186 to 77519218 32 - TSS region transcription start site region 109337
Tssr103162 11 77521183 to 77521187 4 + TSS region transcription start site region 103162
Taok1 11 77529162 to 77607815 78653 - protein coding gene TAO kinase 1
Tssr109338 11 77530274 to 77530277 3 - TSS region transcription start site region 109338
Gm12734 11 77542133 to 77543077 944 + pseudogene predicted gene 12734
Tssr109339 11 77553831 to 77553835 4 - TSS region transcription start site region 109339
Cpgi3316 11 77607008 to 77608246 1238 CpG island CpG island 3316
Tssr109340 11 77607600 to 77607635 35 - TSS region transcription start site region 109340
Tssr109341 11 77607812 to 77607860 48 - TSS region transcription start site region 109341
Tssr103163 11 77607954 to 77607965 11 + TSS region transcription start site region 103163
Gm12732 11 77639854 to 77640033 179 + pseudogene predicted gene 12732
Gm12733 11 77644144 to 77644910 766 - pseudogene predicted gene 12733
Gm23132 11 77658576 to 77658707 131 - snoRNA gene predicted gene, 23132
D11Bhm37 11 77658930 to 77659007 77 DNA segment DNA segment, Chr 11, Boehm 37
D11Bhm149 11 77683047 to 77683243 196 DNA segment DNA segment, Chr 11, Boehm 149
Eae7 11 77683047 to 99486994 21803947 QTL experimental allergic encephalomyelitis susceptibility 7
Ltxs3 11 77683047 to 80855532 3172485 QTL lethal factor toxin susceptibility 3
D11Bhm150 11 77683437 to 77683562 125 DNA segment DNA segment, Chr 11, Boehm 150
Tssr103164 11 77685753 to 77685782 29 + TSS region transcription start site region 103164
Cpgi3317 11 77685772 to 77687944 2172 CpG island CpG island 3317
Nufip2 11 77685835 to 77717966 32131 + protein coding gene nuclear fragile X mental retardation protein interacting protein 2
Tssr109342 11 77685978 to 77686009 31 - TSS region transcription start site region 109342
Tssr103165 11 77686132 to 77686146 14 + TSS region transcription start site region 103165
Tssr103166 11 77686161 to 77686179 18 + TSS region transcription start site region 103166
Tssr103167 11 77686229 to 77686240 11 + TSS region transcription start site region 103167
Tssr103168 11 77687251 to 77687274 23 + TSS region transcription start site region 103168
Tssr103169 11 77693576 to 77693580 4 + TSS region transcription start site region 103169
D11Bhm38 11 77707944 to 77708145 201 DNA segment DNA segment, Chr 11, Boehm 38
Tssr103170 11 77710448 to 77710451 3 + TSS region transcription start site region 103170
Tssr103171 11 77710964 to 77710975 11 + TSS region transcription start site region 103171
Tssr103172 11 77711554 to 77711567 13 + TSS region transcription start site region 103172
Tssr103173 11 77713670 to 77713674 4 + TSS region transcription start site region 103173
Tssr103174 11 77715194 to 77715198 4 + TSS region transcription start site region 103174
Cryba1 11 77718615 to 77725283 6668 - protein coding gene crystallin, beta A1
Tssr109343 11 77718659 to 77718666 7 - TSS region transcription start site region 109343
Tssr103175 11 77718726 to 77718749 23 + TSS region transcription start site region 103175
Tssr109344 11 77718737 to 77718756 19 - TSS region transcription start site region 109344
Tssr109345 11 77718768 to 77718778 10 - TSS region transcription start site region 109345
Tssr109346 11 77718781 to 77718814 33 - TSS region transcription start site region 109346
Tssr103176 11 77718796 to 77718812 16 + TSS region transcription start site region 103176
Tssr109347 11 77718849 to 77718856 7 - TSS region transcription start site region 109347
Tssr109348 11 77718889 to 77718906 17 - TSS region transcription start site region 109348
Tssr109349 11 77719510 to 77719522 12 - TSS region transcription start site region 109349
Tssr109350 11 77720935 to 77720946 11 - TSS region transcription start site region 109350
Tssr109351 11 77720995 to 77721002 7 - TSS region transcription start site region 109351
Tssr103177 11 77722605 to 77722644 39 + TSS region transcription start site region 103177
Tssr109352 11 77722637 to 77722646 9 - TSS region transcription start site region 109352
Tssr109353 11 77722662 to 77722673 11 - TSS region transcription start site region 109353
Tssr109354 11 77722677 to 77722697 20 - TSS region transcription start site region 109354
Tssr109355 11 77725281 to 77725294 13 - TSS region transcription start site region 109355
D11Bhm151 11 77726328 to 77726544 216 DNA segment DNA segment, Chr 11, Boehm 151
Tssr103178 11 77747005 to 77747007 2 + TSS region transcription start site region 103178
Gm11191 11 77747041 to 77748041 1000 + pseudogene predicted gene 11191
D11Bhm39 11 77751344 to 77751425 81 DNA segment DNA segment, Chr 11, Boehm 39
Cpgi3318 11 77762773 to 77764207 1434 CpG island CpG island 3318
Myo18a 11 77763246 to 77865980 102734 + protein coding gene myosin XVIIIA
Tssr103179 11 77763269 to 77763339 70 + TSS region transcription start site region 103179
Tssr109356 11 77764047 to 77764060 13 - TSS region transcription start site region 109356
Tssr103180 11 77765588 to 77765643 55 + TSS region transcription start site region 103180
Tssr103181 11 77765652 to 77765665 13 + TSS region transcription start site region 103181
Cpgi3319 11 77766421 to 77766967 546 CpG island CpG island 3319
Tssr103182 11 77770881 to 77770885 4 + TSS region transcription start site region 103182
Gm10277 11 77785453 to 77787747 2294 - protein coding gene predicted gene 10277
Cpgi3320 11 77793170 to 77793585 415 CpG island CpG island 3320
Tssr103183 11 77801154 to 77801166 12 + TSS region transcription start site region 103183
Tssr109357 11 77801215 to 77801250 35 - TSS region transcription start site region 109357
Tssr103184 11 77801291 to 77801321 30 + TSS region transcription start site region 103184
Tssr103185 11 77801325 to 77801355 30 + TSS region transcription start site region 103185
Tssr103186 11 77802370 to 77802397 27 + TSS region transcription start site region 103186
Tssr103187 11 77802406 to 77802422 16 + TSS region transcription start site region 103187
Tssr103188 11 77802424 to 77802435 11 + TSS region transcription start site region 103188
Tssr103189 11 77811214 to 77811227 13 + TSS region transcription start site region 103189
D11Bhm40 11 77826320 to 77826450 130 DNA segment DNA segment, Chr 11, Boehm 40
Tssr103190 11 77838005 to 77838009 4 + TSS region transcription start site region 103190
Tssr103191 11 77838047 to 77838075 28 + TSS region transcription start site region 103191
Tssr103192 11 77838082 to 77838106 24 + TSS region transcription start site region 103192
Tssr103193 11 77838119 to 77838126 7 + TSS region transcription start site region 103193
Tssr103194 11 77838127 to 77838148 21 + TSS region transcription start site region 103194
Gm36875 11 77839685 to 77840771 1086 - lncRNA gene predicted gene, 36875
Tssr103195 11 77840254 to 77840264 10 + TSS region transcription start site region 103195
Tssr103196 11 77840268 to 77840298 30 + TSS region transcription start site region 103196
Tssr103197 11 77850722 to 77850733 11 + TSS region transcription start site region 103197
Tssr103198 11 77853606 to 77853654 48 + TSS region transcription start site region 103198
Cpgi3321 11 77859322 to 77860091 769 CpG island CpG island 3321
Cpgi3322 11 77876267 to 77876501 234 CpG island CpG island 3322
Tssr103199 11 77879579 to 77879595 16 + TSS region transcription start site region 103199
Pipox 11 77880614 to 77893872 13258 - protein coding gene pipecolic acid oxidase
Tssr109358 11 77880988 to 77881028 40 - TSS region transcription start site region 109358
Tssr109359 11 77881187 to 77881193 6 - TSS region transcription start site region 109359
Tssr109360 11 77882189 to 77882237 48 - TSS region transcription start site region 109360
Gm29932 11 77884262 to 77886813 2551 + lncRNA gene predicted gene, 29932
Tssr109361 11 77884545 to 77884564 19 - TSS region transcription start site region 109361
Tssr103200 11 77884678 to 77884695 17 + TSS region transcription start site region 103200
Tssr109362 11 77893007 to 77893023 16 - TSS region transcription start site region 109362
D11Bhm41 11 77893316 to 77893482 166 DNA segment DNA segment, Chr 11, Boehm 41
Tssr109363 11 77893780 to 77893838 58 - TSS region transcription start site region 109363
Tssr109364 11 77893843 to 77893854 11 - TSS region transcription start site region 109364
Tssr109365 11 77893855 to 77893856 1 - TSS region transcription start site region 109365
Tssr109366 11 77893859 to 77893870 11 - TSS region transcription start site region 109366
Gm29979 11 77896026 to 77907238 11212 + lncRNA gene predicted gene, 29979
D11Bhm42 11 77897982 to 77898101 119 DNA segment DNA segment, Chr 11, Boehm 42
Gm11190 11 77912127 to 77929288 17161 - lincRNA gene predicted gene 11190
Cpgi3323 11 77914671 to 77914942 271 CpG island CpG island 3323