Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:76988489-77118598

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21 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3300 11 76997140 to 76997667 527 CpG island CpG island 3300
Cpgi3301 11 76998170 to 76999084 914 CpG island CpG island 3301
Tssr103121 11 76998595 to 76998600 5 + TSS region transcription start site region 103121
Slc6a4 11 76998603 to 77032340 33737 + protein coding gene solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Gm12343 11 77008914 to 77009873 959 - antisense lncRNA gene predicted gene 12343
Tssr109318 11 77009168 to 77009183 15 - TSS region transcription start site region 109318
Tssr103122 11 77009251 to 77009262 11 + TSS region transcription start site region 103122
Tssr103123 11 77009265 to 77009280 15 + TSS region transcription start site region 103123
Nsrp1 11 77044292 to 77078435 34143 - protein coding gene nuclear speckle regulatory protein 1
Tssr109319 11 77046242 to 77046254 12 - TSS region transcription start site region 109319
Tssr109320 11 77046467 to 77046485 18 - TSS region transcription start site region 109320
Gm22772 11 77052947 to 77053067 120 + snoRNA gene predicted gene, 22772
D11Mit280 11 77053489 to 77053598 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 280
Cpgi3302 11 77077968 to 77078769 801 CpG island CpG island 3302
Mir423 11 77078064 to 77078172 108 - miRNA gene microRNA 423
Tssr109321 11 77078404 to 77078442 38 - TSS region transcription start site region 109321
Tssr103124 11 77078476 to 77078505 29 + TSS region transcription start site region 103124
Tssr3582 11 77078508 to 77078528 20 + TSS region transcription start site region 3582
Tssr3583 11 77078568 to 77078580 12 + TSS region transcription start site region 3583
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344