Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:76854628-77445525

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
Gm40200 11 76857490 to 76868897 11407 + lncRNA gene predicted gene, 40200
Tssr103108 11 76891109 to 76891130 21 + TSS region transcription start site region 103108
Tssr103109 11 76891132 to 76891152 20 + TSS region transcription start site region 103109
Tssr103110 11 76891192 to 76891203 11 + TSS region transcription start site region 103110
D11Mit372 11 76891763 to 76891900 137 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-372
D11Mit299 11 76895615 to 76895739 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 299
Tssr3580 11 76902020 to 76902037 17 + TSS region transcription start site region 3580
Tssr103111 11 76902152 to 76902167 15 + TSS region transcription start site region 103111
Tmigd1 11 76902159 to 76916587 14428 + protein coding gene transmembrane and immunoglobulin domain containing 1
Tssr103112 11 76902174 to 76902180 6 + TSS region transcription start site region 103112
Tssr103113 11 76902182 to 76902185 3 + TSS region transcription start site region 103113
Tssr3581 11 76904466 to 76904469 3 + TSS region transcription start site region 3581
Tssr103114 11 76904484 to 76904503 19 + TSS region transcription start site region 103114
Tssr103115 11 76904513 to 76904569 56 + TSS region transcription start site region 103115
D11Mit244 11 76909874 to 76909963 89 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 244
Tssr103116 11 76916870 to 76916874 4 + TSS region transcription start site region 103116
D11Mit116 11 76936825 to 76936959 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 116
Cpgi3299 11 76945403 to 76946124 721 CpG island CpG island 3299
Blmh 11 76945656 to 76987389 41733 + protein coding gene bleomycin hydrolase
Tssr103117 11 76945660 to 76945671 11 + TSS region transcription start site region 103117
Tssr103118 11 76945702 to 76945713 11 + TSS region transcription start site region 103118
Tssr103119 11 76945719 to 76945791 72 + TSS region transcription start site region 103119
Tssr103120 11 76945807 to 76945816 9 + TSS region transcription start site region 103120
D11Mit245 11 76963784 to 76963931 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 245
Gm22611 11 76974086 to 76974235 149 + snRNA gene predicted gene, 22611
Cpgi3300 11 76997140 to 76997667 527 CpG island CpG island 3300
Cpgi3301 11 76998170 to 76999084 914 CpG island CpG island 3301
Tssr103121 11 76998595 to 76998600 5 + TSS region transcription start site region 103121
Slc6a4 11 76998603 to 77032340 33737 + protein coding gene solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Gm12343 11 77008914 to 77009873 959 - antisense lncRNA gene predicted gene 12343
Tssr109318 11 77009168 to 77009183 15 - TSS region transcription start site region 109318
Tssr103122 11 77009251 to 77009262 11 + TSS region transcription start site region 103122
Tssr103123 11 77009265 to 77009280 15 + TSS region transcription start site region 103123
Nsrp1 11 77044292 to 77078435 34143 - protein coding gene nuclear speckle regulatory protein 1
Tssr109319 11 77046242 to 77046254 12 - TSS region transcription start site region 109319
Tssr109320 11 77046467 to 77046485 18 - TSS region transcription start site region 109320
Gm22772 11 77052947 to 77053067 120 + snoRNA gene predicted gene, 22772
D11Mit280 11 77053489 to 77053598 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 280
Cpgi3302 11 77077968 to 77078769 801 CpG island CpG island 3302
Mir423 11 77078064 to 77078172 108 - miRNA gene microRNA 423
Tssr109321 11 77078404 to 77078442 38 - TSS region transcription start site region 109321
Tssr103124 11 77078476 to 77078505 29 + TSS region transcription start site region 103124
Tssr3582 11 77078508 to 77078528 20 + TSS region transcription start site region 3582
Tssr3583 11 77078568 to 77078580 12 + TSS region transcription start site region 3583
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344
Gm12345 11 77149628 to 77150525 897 + pseudogene predicted gene 12345
Gm45027 11 77200125 to 77200819 694 - lincRNA gene predicted gene 45027
Tssr109322 11 77200817 to 77200821 4 - TSS region transcription start site region 109322
Tssr109323 11 77200924 to 77200944 20 - TSS region transcription start site region 109323
Tssr109324 11 77200948 to 77200955 7 - TSS region transcription start site region 109324
Tssr3584 11 77200960 to 77200963 3 - TSS region transcription start site region 3584
Tssr109325 11 77200973 to 77200989 16 - TSS region transcription start site region 109325
Tssr109326 11 77200999 to 77201004 5 - TSS region transcription start site region 109326
6330571C24Rik 11 77211976 to 77213205 1229 lncRNA gene RIKEN cDNA 6330571C24 gene
Cpgi3303 11 77215693 to 77217040 1347 CpG island CpG island 3303
Tssr103125 11 77216171 to 77216178 7 + TSS region transcription start site region 103125
Tssr103126 11 77216180 to 77216279 99 + TSS region transcription start site region 103126
Ssh2 11 77216287 to 77460220 243933 + protein coding gene slingshot protein phosphatase 2
Tssr103127 11 77235477 to 77235481 4 + TSS region transcription start site region 103127
Gm24989 11 77244928 to 77245015 87 - snoRNA gene predicted gene, 24989
Tssr103128 11 77293438 to 77293439 1 + TSS region transcription start site region 103128
Gm12346 11 77293444 to 77295898 2454 + pseudogene predicted gene 12346
Tssr103129 11 77293995 to 77293999 4 + TSS region transcription start site region 103129
Tssr103130 11 77294035 to 77294081 46 + TSS region transcription start site region 103130
Tssr103131 11 77340057 to 77340061 4 + TSS region transcription start site region 103131
Cpgi3304 11 77347993 to 77348743 750 CpG island CpG island 3304
Tssr103132 11 77348259 to 77348269 10 + TSS region transcription start site region 103132
Tssr103133 11 77348272 to 77348292 20 + TSS region transcription start site region 103133
Tssr103134 11 77349268 to 77349279 11 + TSS region transcription start site region 103134
Tssr109327 11 77386301 to 77386315 14 - TSS region transcription start site region 109327
Gm30976 11 77398276 to 77406786 8510 - pseudogene predicted gene, 30976