Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:76607852-77608180

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
Tssr109300 11 76608543 to 76608546 3 - TSS region transcription start site region 109300
Tssr109301 11 76611142 to 76611146 4 - TSS region transcription start site region 109301
Gm26780 11 76614467 to 76622204 7737 + lincRNA gene predicted gene, 26780
Tssr109302 11 76617469 to 76617481 12 - TSS region transcription start site region 109302
Cpgi3292 11 76622014 to 76624057 2043 CpG island CpG island 3292
Gm18373 11 76622208 to 76623197 989 - pseudogene predicted gene, 18373
Tssr109303 11 76622215 to 76622260 45 - TSS region transcription start site region 109303
Tssr103097 11 76622315 to 76622362 47 + TSS region transcription start site region 103097
Tssr109304 11 76623296 to 76623309 13 - TSS region transcription start site region 109304
Tssr109305 11 76623312 to 76623354 42 - TSS region transcription start site region 109305
Tssr109306 11 76623511 to 76623557 46 - TSS region transcription start site region 109306
Gm46288 11 76626653 to 76659995 33342 + lncRNA gene predicted gene, 46288
Cpgi3293 11 76645975 to 76646350 375 CpG island CpG island 3293
Gm36558 11 76661893 to 76662347 454 - lncRNA gene predicted gene, 36558
Cpgi3294 11 76666230 to 76666659 429 CpG island CpG island 3294
Cpgi3295 11 76672267 to 76673524 1257 CpG island CpG island 3295
Tssr103098 11 76672456 to 76672461 5 + TSS region transcription start site region 103098
Bhlha9 11 76672470 to 76673676 1206 + protein coding gene basic helix-loop-helix family, member a9
Tssr103099 11 76679642 to 76679647 5 + TSS region transcription start site region 103099
Tssr103100 11 76679757 to 76679787 30 + TSS region transcription start site region 103100
Tssr103101 11 76679831 to 76679840 9 + TSS region transcription start site region 103101
Trarg1 11 76679873 to 76698664 18791 + protein coding gene trafficking regulator of GLUT4 (SLC2A4) 1
Tssr103102 11 76679900 to 76679903 3 + TSS region transcription start site region 103102
Tssr103103 11 76679905 to 76679922 17 + TSS region transcription start site region 103103
Tssr103104 11 76679961 to 76679990 29 + TSS region transcription start site region 103104
Tssr103105 11 76697501 to 76697505 4 + TSS region transcription start site region 103105
Cpgi3296 11 76700103 to 76700600 497 CpG island CpG island 3296
Gosr1 11 76726602 to 76763579 36977 - protein coding gene golgi SNAP receptor complex member 1
Tssr109307 11 76726907 to 76726912 5 - TSS region transcription start site region 109307
Tssr109308 11 76734726 to 76734752 26 - TSS region transcription start site region 109308
Cpgi3297 11 76763486 to 76763692 206 CpG island CpG island 3297
Tssr109309 11 76763550 to 76763582 32 - TSS region transcription start site region 109309
Cpd 11 76778424 to 76847018 68594 - protein coding gene carboxypeptidase D
Tssr109310 11 76778988 to 76779008 20 - TSS region transcription start site region 109310
Tssr109311 11 76779224 to 76779243 19 - TSS region transcription start site region 109311
Tssr109312 11 76787602 to 76787617 15 - TSS region transcription start site region 109312
Tssr109313 11 76809040 to 76809044 4 - TSS region transcription start site region 109313
Tssr109314 11 76812442 to 76812454 12 - TSS region transcription start site region 109314
Tssr109315 11 76844317 to 76844320 3 - TSS region transcription start site region 109315
Tssr103106 11 76845857 to 76845861 4 + TSS region transcription start site region 103106
Cpgi3298 11 76846032 to 76847219 1187 CpG island CpG island 3298
Tssr103107 11 76846512 to 76846528 16 + TSS region transcription start site region 103107
Tssr109316 11 76846968 to 76847045 77 - TSS region transcription start site region 109316
Tssr109317 11 76847047 to 76847052 5 - TSS region transcription start site region 109317
Gm40200 11 76857490 to 76868897 11407 + lncRNA gene predicted gene, 40200
Tssr103108 11 76891109 to 76891130 21 + TSS region transcription start site region 103108
Tssr103109 11 76891132 to 76891152 20 + TSS region transcription start site region 103109
Tssr103110 11 76891192 to 76891203 11 + TSS region transcription start site region 103110
D11Mit372 11 76891763 to 76891900 137 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-372
D11Mit299 11 76895615 to 76895739 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 299
Tssr3580 11 76902020 to 76902037 17 + TSS region transcription start site region 3580
Tssr103111 11 76902152 to 76902167 15 + TSS region transcription start site region 103111
Tmigd1 11 76902159 to 76916587 14428 + protein coding gene transmembrane and immunoglobulin domain containing 1
Tssr103112 11 76902174 to 76902180 6 + TSS region transcription start site region 103112
Tssr103113 11 76902182 to 76902185 3 + TSS region transcription start site region 103113
Tssr3581 11 76904466 to 76904469 3 + TSS region transcription start site region 3581
Tssr103114 11 76904484 to 76904503 19 + TSS region transcription start site region 103114
Tssr103115 11 76904513 to 76904569 56 + TSS region transcription start site region 103115
D11Mit244 11 76909874 to 76909963 89 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 244
Tssr103116 11 76916870 to 76916874 4 + TSS region transcription start site region 103116
D11Mit116 11 76936825 to 76936959 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 116
Cpgi3299 11 76945403 to 76946124 721 CpG island CpG island 3299
Blmh 11 76945656 to 76987389 41733 + protein coding gene bleomycin hydrolase
Tssr103117 11 76945660 to 76945671 11 + TSS region transcription start site region 103117
Tssr103118 11 76945702 to 76945713 11 + TSS region transcription start site region 103118
Tssr103119 11 76945719 to 76945791 72 + TSS region transcription start site region 103119
Tssr103120 11 76945807 to 76945816 9 + TSS region transcription start site region 103120
D11Mit245 11 76963784 to 76963931 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 245
Gm22611 11 76974086 to 76974235 149 + snRNA gene predicted gene, 22611
Cpgi3300 11 76997140 to 76997667 527 CpG island CpG island 3300
Cpgi3301 11 76998170 to 76999084 914 CpG island CpG island 3301
Tssr103121 11 76998595 to 76998600 5 + TSS region transcription start site region 103121
Slc6a4 11 76998603 to 77032340 33737 + protein coding gene solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Gm12343 11 77008914 to 77009873 959 - antisense lncRNA gene predicted gene 12343
Tssr109318 11 77009168 to 77009183 15 - TSS region transcription start site region 109318
Tssr103122 11 77009251 to 77009262 11 + TSS region transcription start site region 103122
Tssr103123 11 77009265 to 77009280 15 + TSS region transcription start site region 103123
Nsrp1 11 77044292 to 77078435 34143 - protein coding gene nuclear speckle regulatory protein 1
Tssr109319 11 77046242 to 77046254 12 - TSS region transcription start site region 109319
Tssr109320 11 77046467 to 77046485 18 - TSS region transcription start site region 109320
Gm22772 11 77052947 to 77053067 120 + snoRNA gene predicted gene, 22772
D11Mit280 11 77053489 to 77053598 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 280
Cpgi3302 11 77077968 to 77078769 801 CpG island CpG island 3302
Mir423 11 77078064 to 77078172 108 - miRNA gene microRNA 423
Tssr109321 11 77078404 to 77078442 38 - TSS region transcription start site region 109321
Tssr103124 11 77078476 to 77078505 29 + TSS region transcription start site region 103124
Tssr3582 11 77078508 to 77078528 20 + TSS region transcription start site region 3582
Tssr3583 11 77078568 to 77078580 12 + TSS region transcription start site region 3583
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344
Gm12345 11 77149628 to 77150525 897 + pseudogene predicted gene 12345
Gm45027 11 77200125 to 77200819 694 - lincRNA gene predicted gene 45027
Tssr109322 11 77200817 to 77200821 4 - TSS region transcription start site region 109322
Tssr109323 11 77200924 to 77200944 20 - TSS region transcription start site region 109323
Tssr109324 11 77200948 to 77200955 7 - TSS region transcription start site region 109324
Tssr3584 11 77200960 to 77200963 3 - TSS region transcription start site region 3584
Tssr109325 11 77200973 to 77200989 16 - TSS region transcription start site region 109325
Tssr109326 11 77200999 to 77201004 5 - TSS region transcription start site region 109326
6330571C24Rik 11 77211976 to 77213205 1229 lncRNA gene RIKEN cDNA 6330571C24 gene
Cpgi3303 11 77215693 to 77217040 1347 CpG island CpG island 3303
Tssr103125 11 77216171 to 77216178 7 + TSS region transcription start site region 103125
Tssr103126 11 77216180 to 77216279 99 + TSS region transcription start site region 103126
Ssh2 11 77216287 to 77460220 243933 + protein coding gene slingshot protein phosphatase 2
Tssr103127 11 77235477 to 77235481 4 + TSS region transcription start site region 103127
Gm24989 11 77244928 to 77245015 87 - snoRNA gene predicted gene, 24989
Tssr103128 11 77293438 to 77293439 1 + TSS region transcription start site region 103128
Gm12346 11 77293444 to 77295898 2454 + pseudogene predicted gene 12346
Tssr103129 11 77293995 to 77293999 4 + TSS region transcription start site region 103129
Tssr103130 11 77294035 to 77294081 46 + TSS region transcription start site region 103130
Tssr103131 11 77340057 to 77340061 4 + TSS region transcription start site region 103131
Cpgi3304 11 77347993 to 77348743 750 CpG island CpG island 3304
Tssr103132 11 77348259 to 77348269 10 + TSS region transcription start site region 103132
Tssr103133 11 77348272 to 77348292 20 + TSS region transcription start site region 103133
Tssr103134 11 77349268 to 77349279 11 + TSS region transcription start site region 103134
Tssr109327 11 77386301 to 77386315 14 - TSS region transcription start site region 109327
Gm30976 11 77398276 to 77406786 8510 - pseudogene predicted gene, 30976
Tssr103135 11 77456432 to 77456444 12 + TSS region transcription start site region 103135
Cpgi3305 11 77462030 to 77463221 1191 CpG island CpG island 3305
Tssr103136 11 77462325 to 77462421 96 + TSS region transcription start site region 103136
Coro6 11 77462411 to 77470484 8073 + protein coding gene coronin 6
Tssr103137 11 77462426 to 77462438 12 + TSS region transcription start site region 103137
Tssr103138 11 77462558 to 77462565 7 + TSS region transcription start site region 103138
Tssr103139 11 77462567 to 77462596 29 + TSS region transcription start site region 103139
Tssr103140 11 77462605 to 77462652 47 + TSS region transcription start site region 103140
Cpgi3306 11 77466935 to 77468108 1173 CpG island CpG island 3306
Cpgi3307 11 77469158 to 77469593 435 CpG island CpG island 3307
Tssr103141 11 77469850 to 77469864 14 + TSS region transcription start site region 103141
Tssr103142 11 77469880 to 77469889 9 + TSS region transcription start site region 103142
Tssr103143 11 77469999 to 77470016 17 + TSS region transcription start site region 103143
Ankrd13b 11 77470485 to 77489678 19193 - protein coding gene ankyrin repeat domain 13b
Cpgi3308 11 77471050 to 77472086 1036 CpG island CpG island 3308
Cpgi3309 11 77472511 to 77472920 409 CpG island CpG island 3309
Cpgi3310 11 77488885 to 77490386 1501 CpG island CpG island 3310
Tssr109328 11 77489647 to 77489654 7 - TSS region transcription start site region 109328
Tssr109329 11 77489670 to 77489687 17 - TSS region transcription start site region 109329
Tssr109330 11 77489802 to 77489809 7 - TSS region transcription start site region 109330
2210008F06Rik 11 77489854 to 77491409 1555 + lincRNA gene RIKEN cDNA 2210008F06 gene
Tssr109331 11 77489979 to 77489990 11 - TSS region transcription start site region 109331
Tssr109332 11 77490010 to 77490055 45 - TSS region transcription start site region 109332
Cpgi3311 11 77491702 to 77491985 283 CpG island CpG island 3311
Cpgi3312 11 77492684 to 77494402 1718 CpG island CpG island 3312
Tssr103144 11 77493194 to 77493213 19 + TSS region transcription start site region 103144
Tssr103145 11 77493265 to 77493302 37 + TSS region transcription start site region 103145
Tssr103146 11 77493311 to 77493335 24 + TSS region transcription start site region 103146
Tssr103147 11 77493368 to 77493394 26 + TSS region transcription start site region 103147
Tssr103148 11 77493408 to 77493487 79 + TSS region transcription start site region 103148
Git1 11 77493562 to 77507786 14224 + protein coding gene GIT ArfGAP 1
Tssr103149 11 77496333 to 77496340 7 + TSS region transcription start site region 103149
Tssr103150 11 77498184 to 77498190 6 + TSS region transcription start site region 103150
Tssr103151 11 77500887 to 77500927 40 + TSS region transcription start site region 103151
Tssr103152 11 77503800 to 77503835 35 + TSS region transcription start site region 103152
Tssr103153 11 77503856 to 77503869 13 + TSS region transcription start site region 103153
Tssr103154 11 77503876 to 77503886 10 + TSS region transcription start site region 103154
Tssr103155 11 77505548 to 77505559 11 + TSS region transcription start site region 103155
Tssr109333 11 77506703 to 77506713 10 - TSS region transcription start site region 109333
Tssr109334 11 77506785 to 77506799 14 - TSS region transcription start site region 109334
Tssr103156 11 77506922 to 77506952 30 + TSS region transcription start site region 103156
Tssr103157 11 77507158 to 77507171 13 + TSS region transcription start site region 103157
Tssr103158 11 77507310 to 77507332 22 + TSS region transcription start site region 103158
Trp53i13 11 77508099 to 77515921 7822 - protein coding gene transformation related protein 53 inducible protein 13
Cpgi3313 11 77508143 to 77508727 584 CpG island CpG island 3313
Cpgi3314 11 77512721 to 77513962 1241 CpG island CpG island 3314
Tssr109335 11 77513245 to 77513304 59 - TSS region transcription start site region 109335
Tssr109336 11 77513335 to 77513348 13 - TSS region transcription start site region 109336
Tssr103159 11 77513511 to 77513537 26 + TSS region transcription start site region 103159
Cpgi3315 11 77514502 to 77516093 1591 CpG island CpG island 3315
Tssr103160 11 77515104 to 77515128 24 + TSS region transcription start site region 103160
Abhd15 11 77515117 to 77520628 5511 + protein coding gene abhydrolase domain containing 15
Gm10392 11 77516660 to 77519198 2538 - protein coding gene predicted gene 10392
Tssr103161 11 77518566 to 77518576 10 + TSS region transcription start site region 103161
Tssr109337 11 77519186 to 77519218 32 - TSS region transcription start site region 109337
Tssr103162 11 77521183 to 77521187 4 + TSS region transcription start site region 103162
Taok1 11 77529162 to 77607815 78653 - protein coding gene TAO kinase 1
Tssr109338 11 77530274 to 77530277 3 - TSS region transcription start site region 109338
Gm12734 11 77542133 to 77543077 944 + pseudogene predicted gene 12734
Tssr109339 11 77553831 to 77553835 4 - TSS region transcription start site region 109339
Cpgi3316 11 77607008 to 77608246 1238 CpG island CpG island 3316
Tssr109340 11 77607600 to 77607635 35 - TSS region transcription start site region 109340
Tssr109341 11 77607812 to 77607860 48 - TSS region transcription start site region 109341
Tssr103163 11 77607954 to 77607965 11 + TSS region transcription start site region 103163