Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:76470702-77420713

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
Abr 11 76416732 to 76577739 161007 - protein coding gene active BCR-related gene
Tssr109262 11 76479116 to 76479127 11 - TSS region transcription start site region 109262
Tssr109263 11 76479132 to 76479164 32 - TSS region transcription start site region 109263
Tssr109264 11 76479168 to 76479199 31 - TSS region transcription start site region 109264
Tssr109265 11 76479699 to 76479719 20 - TSS region transcription start site region 109265
Tssr109266 11 76479731 to 76479771 40 - TSS region transcription start site region 109266
Tssr103091 11 76493986 to 76494001 15 + TSS region transcription start site region 103091
Cpgi3290 11 76493995 to 76495520 1525 CpG island CpG island 3290
Tssr103092 11 76494027 to 76494045 18 + TSS region transcription start site region 103092
Tssr109267 11 76494395 to 76494438 43 - TSS region transcription start site region 109267
Tssr109268 11 76494494 to 76494547 53 - TSS region transcription start site region 109268
Tssr109269 11 76494597 to 76494609 12 - TSS region transcription start site region 109269
Tssr109270 11 76494622 to 76494640 18 - TSS region transcription start site region 109270
Tssr109271 11 76494643 to 76494683 40 - TSS region transcription start site region 109271
Tssr103093 11 76494720 to 76494737 17 + TSS region transcription start site region 103093
Tssr109272 11 76494860 to 76494883 23 - TSS region transcription start site region 109272
Tssr109273 11 76494895 to 76494915 20 - TSS region transcription start site region 109273
Tssr109274 11 76494950 to 76495034 84 - TSS region transcription start site region 109274
Tssr109275 11 76495290 to 76495308 18 - TSS region transcription start site region 109275
Tssr109276 11 76495364 to 76495403 39 - TSS region transcription start site region 109276
Tssr109277 11 76497772 to 76497794 22 - TSS region transcription start site region 109277
Tssr103094 11 76497999 to 76498014 15 + TSS region transcription start site region 103094
Tssr109278 11 76509208 to 76509228 20 - TSS region transcription start site region 109278
Tssr109279 11 76509231 to 76509240 9 - TSS region transcription start site region 109279
Tssr109280 11 76509257 to 76509307 50 - TSS region transcription start site region 109280
Tssr109281 11 76509338 to 76509352 14 - TSS region transcription start site region 109281
Tssr109282 11 76509421 to 76509435 14 - TSS region transcription start site region 109282
Gm12341 11 76514069 to 76514571 502 + pseudogene predicted gene 12341
Tssr109283 11 76528114 to 76528119 5 - TSS region transcription start site region 109283
Tssr109284 11 76541876 to 76541913 37 - TSS region transcription start site region 109284
Tssr103095 11 76547949 to 76547997 48 + TSS region transcription start site region 103095
Tssr109285 11 76548435 to 76548439 4 - TSS region transcription start site region 109285
Cpgi3291 11 76570836 to 76571815 979 CpG island CpG island 3291
Tssr109286 11 76571263 to 76571273 10 - TSS region transcription start site region 109286
Tssr109287 11 76571302 to 76571309 7 - TSS region transcription start site region 109287
Tssr109288 11 76571343 to 76571364 21 - TSS region transcription start site region 109288
Tssr109289 11 76571373 to 76571403 30 - TSS region transcription start site region 109289
Tssr109290 11 76571484 to 76571502 18 - TSS region transcription start site region 109290
Tssr109291 11 76571527 to 76571558 31 - TSS region transcription start site region 109291
Tssr109292 11 76571604 to 76571620 16 - TSS region transcription start site region 109292
Tssr109293 11 76571624 to 76571636 12 - TSS region transcription start site region 109293
Tssr109294 11 76577672 to 76577695 23 - TSS region transcription start site region 109294
Tssr109295 11 76577701 to 76577717 16 - TSS region transcription start site region 109295
Tssr109296 11 76578006 to 76578019 13 - TSS region transcription start site region 109296
Tssr109297 11 76578025 to 76578048 23 - TSS region transcription start site region 109297
D11Mit322 11 76579323 to 76579434 111 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 322
Tssr109298 11 76584284 to 76584288 4 - TSS region transcription start site region 109298
Tssr103096 11 76601279 to 76601283 4 + TSS region transcription start site region 103096
Rpl36-ps2 11 76601319 to 76601629 310 + pseudogene ribosomal protein L36, pseudogene 2
Tssr109299 11 76604620 to 76604639 19 - TSS region transcription start site region 109299
Tssr109300 11 76608543 to 76608546 3 - TSS region transcription start site region 109300
Tssr109301 11 76611142 to 76611146 4 - TSS region transcription start site region 109301
Gm26780 11 76614467 to 76622204 7737 + lincRNA gene predicted gene, 26780
Tssr109302 11 76617469 to 76617481 12 - TSS region transcription start site region 109302
Cpgi3292 11 76622014 to 76624057 2043 CpG island CpG island 3292
Gm18373 11 76622208 to 76623197 989 - pseudogene predicted gene, 18373
Tssr109303 11 76622215 to 76622260 45 - TSS region transcription start site region 109303
Tssr103097 11 76622315 to 76622362 47 + TSS region transcription start site region 103097
Tssr109304 11 76623296 to 76623309 13 - TSS region transcription start site region 109304
Tssr109305 11 76623312 to 76623354 42 - TSS region transcription start site region 109305
Tssr109306 11 76623511 to 76623557 46 - TSS region transcription start site region 109306
Gm46288 11 76626653 to 76659995 33342 + lncRNA gene predicted gene, 46288
Cpgi3293 11 76645975 to 76646350 375 CpG island CpG island 3293
Gm36558 11 76661893 to 76662347 454 - lncRNA gene predicted gene, 36558
Cpgi3294 11 76666230 to 76666659 429 CpG island CpG island 3294
Cpgi3295 11 76672267 to 76673524 1257 CpG island CpG island 3295
Tssr103098 11 76672456 to 76672461 5 + TSS region transcription start site region 103098
Bhlha9 11 76672470 to 76673676 1206 + protein coding gene basic helix-loop-helix family, member a9
Tssr103099 11 76679642 to 76679647 5 + TSS region transcription start site region 103099
Tssr103100 11 76679757 to 76679787 30 + TSS region transcription start site region 103100
Tssr103101 11 76679831 to 76679840 9 + TSS region transcription start site region 103101
Trarg1 11 76679873 to 76698664 18791 + protein coding gene trafficking regulator of GLUT4 (SLC2A4) 1
Tssr103102 11 76679900 to 76679903 3 + TSS region transcription start site region 103102
Tssr103103 11 76679905 to 76679922 17 + TSS region transcription start site region 103103
Tssr103104 11 76679961 to 76679990 29 + TSS region transcription start site region 103104
Tssr103105 11 76697501 to 76697505 4 + TSS region transcription start site region 103105
Cpgi3296 11 76700103 to 76700600 497 CpG island CpG island 3296
Gosr1 11 76726602 to 76763579 36977 - protein coding gene golgi SNAP receptor complex member 1
Tssr109307 11 76726907 to 76726912 5 - TSS region transcription start site region 109307
Tssr109308 11 76734726 to 76734752 26 - TSS region transcription start site region 109308
Cpgi3297 11 76763486 to 76763692 206 CpG island CpG island 3297
Tssr109309 11 76763550 to 76763582 32 - TSS region transcription start site region 109309
Cpd 11 76778424 to 76847018 68594 - protein coding gene carboxypeptidase D
Tssr109310 11 76778988 to 76779008 20 - TSS region transcription start site region 109310
Tssr109311 11 76779224 to 76779243 19 - TSS region transcription start site region 109311
Tssr109312 11 76787602 to 76787617 15 - TSS region transcription start site region 109312
Tssr109313 11 76809040 to 76809044 4 - TSS region transcription start site region 109313
Tssr109314 11 76812442 to 76812454 12 - TSS region transcription start site region 109314
Tssr109315 11 76844317 to 76844320 3 - TSS region transcription start site region 109315
Tssr103106 11 76845857 to 76845861 4 + TSS region transcription start site region 103106
Cpgi3298 11 76846032 to 76847219 1187 CpG island CpG island 3298
Tssr103107 11 76846512 to 76846528 16 + TSS region transcription start site region 103107
Tssr109316 11 76846968 to 76847045 77 - TSS region transcription start site region 109316
Tssr109317 11 76847047 to 76847052 5 - TSS region transcription start site region 109317
Gm40200 11 76857490 to 76868897 11407 + lncRNA gene predicted gene, 40200
Tssr103108 11 76891109 to 76891130 21 + TSS region transcription start site region 103108
Tssr103109 11 76891132 to 76891152 20 + TSS region transcription start site region 103109
Tssr103110 11 76891192 to 76891203 11 + TSS region transcription start site region 103110
D11Mit372 11 76891763 to 76891900 137 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-372
D11Mit299 11 76895615 to 76895739 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 299
Tssr3580 11 76902020 to 76902037 17 + TSS region transcription start site region 3580
Tssr103111 11 76902152 to 76902167 15 + TSS region transcription start site region 103111
Tmigd1 11 76902159 to 76916587 14428 + protein coding gene transmembrane and immunoglobulin domain containing 1
Tssr103112 11 76902174 to 76902180 6 + TSS region transcription start site region 103112
Tssr103113 11 76902182 to 76902185 3 + TSS region transcription start site region 103113
Tssr3581 11 76904466 to 76904469 3 + TSS region transcription start site region 3581
Tssr103114 11 76904484 to 76904503 19 + TSS region transcription start site region 103114
Tssr103115 11 76904513 to 76904569 56 + TSS region transcription start site region 103115
D11Mit244 11 76909874 to 76909963 89 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 244
Tssr103116 11 76916870 to 76916874 4 + TSS region transcription start site region 103116
D11Mit116 11 76936825 to 76936959 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 116
Cpgi3299 11 76945403 to 76946124 721 CpG island CpG island 3299
Blmh 11 76945656 to 76987389 41733 + protein coding gene bleomycin hydrolase
Tssr103117 11 76945660 to 76945671 11 + TSS region transcription start site region 103117
Tssr103118 11 76945702 to 76945713 11 + TSS region transcription start site region 103118
Tssr103119 11 76945719 to 76945791 72 + TSS region transcription start site region 103119
Tssr103120 11 76945807 to 76945816 9 + TSS region transcription start site region 103120
D11Mit245 11 76963784 to 76963931 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 245
Gm22611 11 76974086 to 76974235 149 + snRNA gene predicted gene, 22611
Cpgi3300 11 76997140 to 76997667 527 CpG island CpG island 3300
Cpgi3301 11 76998170 to 76999084 914 CpG island CpG island 3301
Tssr103121 11 76998595 to 76998600 5 + TSS region transcription start site region 103121
Slc6a4 11 76998603 to 77032340 33737 + protein coding gene solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Gm12343 11 77008914 to 77009873 959 - antisense lncRNA gene predicted gene 12343
Tssr109318 11 77009168 to 77009183 15 - TSS region transcription start site region 109318
Tssr103122 11 77009251 to 77009262 11 + TSS region transcription start site region 103122
Tssr103123 11 77009265 to 77009280 15 + TSS region transcription start site region 103123
Nsrp1 11 77044292 to 77078435 34143 - protein coding gene nuclear speckle regulatory protein 1
Tssr109319 11 77046242 to 77046254 12 - TSS region transcription start site region 109319
Tssr109320 11 77046467 to 77046485 18 - TSS region transcription start site region 109320
Gm22772 11 77052947 to 77053067 120 + snoRNA gene predicted gene, 22772
D11Mit280 11 77053489 to 77053598 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 280
Cpgi3302 11 77077968 to 77078769 801 CpG island CpG island 3302
Mir423 11 77078064 to 77078172 108 - miRNA gene microRNA 423
Tssr109321 11 77078404 to 77078442 38 - TSS region transcription start site region 109321
Tssr103124 11 77078476 to 77078505 29 + TSS region transcription start site region 103124
Tssr3582 11 77078508 to 77078528 20 + TSS region transcription start site region 3582
Tssr3583 11 77078568 to 77078580 12 + TSS region transcription start site region 3583
Efcab5 11 77089915 to 77188968 99053 - protein coding gene EF-hand calcium binding domain 5
Gm12344 11 77107852 to 77108180 328 - pseudogene predicted gene 12344
Gm12345 11 77149628 to 77150525 897 + pseudogene predicted gene 12345
Gm45027 11 77200125 to 77200819 694 - lincRNA gene predicted gene 45027
Tssr109322 11 77200817 to 77200821 4 - TSS region transcription start site region 109322
Tssr109323 11 77200924 to 77200944 20 - TSS region transcription start site region 109323
Tssr109324 11 77200948 to 77200955 7 - TSS region transcription start site region 109324
Tssr3584 11 77200960 to 77200963 3 - TSS region transcription start site region 3584
Tssr109325 11 77200973 to 77200989 16 - TSS region transcription start site region 109325
Tssr109326 11 77200999 to 77201004 5 - TSS region transcription start site region 109326
6330571C24Rik 11 77211976 to 77213205 1229 lncRNA gene RIKEN cDNA 6330571C24 gene
Cpgi3303 11 77215693 to 77217040 1347 CpG island CpG island 3303
Tssr103125 11 77216171 to 77216178 7 + TSS region transcription start site region 103125
Tssr103126 11 77216180 to 77216279 99 + TSS region transcription start site region 103126
Ssh2 11 77216287 to 77460220 243933 + protein coding gene slingshot protein phosphatase 2
Tssr103127 11 77235477 to 77235481 4 + TSS region transcription start site region 103127
Gm24989 11 77244928 to 77245015 87 - snoRNA gene predicted gene, 24989
Tssr103128 11 77293438 to 77293439 1 + TSS region transcription start site region 103128
Gm12346 11 77293444 to 77295898 2454 + pseudogene predicted gene 12346
Tssr103129 11 77293995 to 77293999 4 + TSS region transcription start site region 103129
Tssr103130 11 77294035 to 77294081 46 + TSS region transcription start site region 103130
Tssr103131 11 77340057 to 77340061 4 + TSS region transcription start site region 103131
Cpgi3304 11 77347993 to 77348743 750 CpG island CpG island 3304
Tssr103132 11 77348259 to 77348269 10 + TSS region transcription start site region 103132
Tssr103133 11 77348272 to 77348292 20 + TSS region transcription start site region 103133
Tssr103134 11 77349268 to 77349279 11 + TSS region transcription start site region 103134
Tssr109327 11 77386301 to 77386315 14 - TSS region transcription start site region 109327
Gm30976 11 77398276 to 77406786 8510 - pseudogene predicted gene, 30976