Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:76174078-76511220

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps53 11 76046226 to 76179630 133404 - protein coding gene VPS53 GARP complex subunit
Gm46252 11 76149956 to 76174620 24664 + lncRNA gene predicted gene, 46252
Tssr109242 11 76174443 to 76174447 4 - TSS region transcription start site region 109242
Cpgi3281 11 76178942 to 76180008 1066 CpG island CpG island 3281
Tssr109243 11 76179596 to 76179649 53 - TSS region transcription start site region 109243
Tssr103078 11 76179658 to 76179696 38 + TSS region transcription start site region 103078
Cpgi3282 11 76201557 to 76202643 1086 CpG island CpG island 3282
Tssr103079 11 76202007 to 76202030 23 + TSS region transcription start site region 103079
Fam57a 11 76202026 to 76209417 7391 + protein coding gene family with sequence similarity 57, member A
Tssr103080 11 76202051 to 76202079 28 + TSS region transcription start site region 103080
Tssr103081 11 76202084 to 76202103 19 + TSS region transcription start site region 103081
Tssr109244 11 76202635 to 76202639 4 - TSS region transcription start site region 109244
D11Bhm29 11 76204892 to 76204999 107 DNA segment DNA segment, Chr 11, Boehm 29
D11Jcs10 11 76207241 to 76207424 183 DNA segment DNA segment, Chr 11, John C. Schimenti 10
Gemin4 11 76210571 to 76217572 7001 - protein coding gene gem nuclear organelle associated protein 4
Tssr103082 11 76216338 to 76216342 4 + TSS region transcription start site region 103082
Cpgi3283 11 76216938 to 76217883 945 CpG island CpG island 3283
Tssr109245 11 76217490 to 76217591 101 - TSS region transcription start site region 109245
Dbil5 11 76217613 to 76218665 1052 + protein coding gene diazepam binding inhibitor-like 5
Tssr103083 11 76217617 to 76217636 19 + TSS region transcription start site region 103083
Tssr103084 11 76217647 to 76217670 23 + TSS region transcription start site region 103084
Tssr103085 11 76217671 to 76217676 5 + TSS region transcription start site region 103085
Glod4 11 76220395 to 76243699 23304 - protein coding gene glyoxalase domain containing 4
D11Bhm31 11 76232529 to 76232657 128 DNA segment DNA segment, Chr 11, Boehm 31
D11Bhm32 11 76232550 to 76232640 90 DNA segment DNA segment, Chr 11, Boehm 32
D11Bhm148 11 76233647 to 76233742 95 DNA segment DNA segment, Chr 11, Boehm 148
Cpgi3284 11 76243056 to 76244249 1193 CpG island CpG island 3284
Tssr109246 11 76243656 to 76243685 29 - TSS region transcription start site region 109246
Tssr109247 11 76243687 to 76243704 17 - TSS region transcription start site region 109247
Tssr103086 11 76243726 to 76243776 50 + TSS region transcription start site region 103086
Mrm3 11 76243736 to 76250625 6889 + protein coding gene mitochondrial rRNA methyltransferase 3
Nxn 11 76257226 to 76399141 141915 - protein coding gene nucleoredoxin
D11Bhm34 11 76260950 to 76261060 110 DNA segment DNA segment, Chr 11, Boehm 34
Tssr103087 11 76261456 to 76261461 5 + TSS region transcription start site region 103087
Tssr103088 11 76261474 to 76261501 27 + TSS region transcription start site region 103088
Cpgi3285 11 76263015 to 76263374 359 CpG island CpG island 3285
Tssr109248 11 76263091 to 76263103 12 - TSS region transcription start site region 109248
D11Bhm35 11 76275517 to 76275633 116 DNA segment DNA segment, Chr 11, Boehm 35
Tssr109249 11 76287327 to 76287346 19 - TSS region transcription start site region 109249
Tssr109250 11 76287361 to 76287385 24 - TSS region transcription start site region 109250
D11Bhm36 11 76297364 to 76297527 163 DNA segment DNA segment, Chr 11, Boehm 36
Tssr109251 11 76304176 to 76304181 5 - TSS region transcription start site region 109251
D11Jcs11 11 76322793 to 76323041 248 DNA segment DNA segment, Chr 11, John C. Schimenti 11
C230071I02Rik 11 76339078 to 76346220 7142 unclassified gene RIKEN cDNA C230071I02 gene
Tssr109252 11 76341634 to 76341637 3 - TSS region transcription start site region 109252
Tssr109253 11 76388930 to 76388938 8 - TSS region transcription start site region 109253
Cpgi3286 11 76397820 to 76398007 187 CpG island CpG island 3286
Cpgi3287 11 76398112 to 76399481 1369 CpG island CpG island 3287
Tssr109254 11 76399063 to 76399072 9 - TSS region transcription start site region 109254
Tssr109255 11 76399078 to 76399103 25 - TSS region transcription start site region 109255
Tssr109256 11 76399107 to 76399183 76 - TSS region transcription start site region 109256
Gm40199 11 76399225 to 76404297 5072 + lncRNA gene predicted gene, 40199
Cpgi3288 11 76406646 to 76407556 910 CpG island CpG island 3288
Timm22 11 76406952 to 76416292 9340 + protein coding gene translocase of inner mitochondrial membrane 22
Tssr103089 11 76407165 to 76407201 36 + TSS region transcription start site region 103089
Abr 11 76416732 to 76577739 161007 - protein coding gene active BCR-related gene
D11Jcs13 11 76420769 to 76420938 169 DNA segment DNA segment, Chr 11, John C. Schimenti 13
Tssr109257 11 76422255 to 76422268 13 - TSS region transcription start site region 109257
Cpgi3289 11 76436881 to 76437277 396 CpG island CpG island 3289
Tssr109258 11 76437185 to 76437197 12 - TSS region transcription start site region 109258
Tssr109259 11 76437198 to 76437228 30 - TSS region transcription start site region 109259
Tssr103090 11 76454402 to 76454407 5 + TSS region transcription start site region 103090
Tssr109260 11 76468396 to 76468473 77 - TSS region transcription start site region 109260
Tssr109261 11 76468474 to 76468486 12 - TSS region transcription start site region 109261
Tssr109262 11 76479116 to 76479127 11 - TSS region transcription start site region 109262
Tssr109263 11 76479132 to 76479164 32 - TSS region transcription start site region 109263
Tssr109264 11 76479168 to 76479199 31 - TSS region transcription start site region 109264
Tssr109265 11 76479699 to 76479719 20 - TSS region transcription start site region 109265
Tssr109266 11 76479731 to 76479771 40 - TSS region transcription start site region 109266
Tssr103091 11 76493986 to 76494001 15 + TSS region transcription start site region 103091
Cpgi3290 11 76493995 to 76495520 1525 CpG island CpG island 3290
Tssr103092 11 76494027 to 76494045 18 + TSS region transcription start site region 103092
Tssr109267 11 76494395 to 76494438 43 - TSS region transcription start site region 109267
Tssr109268 11 76494494 to 76494547 53 - TSS region transcription start site region 109268
Tssr109269 11 76494597 to 76494609 12 - TSS region transcription start site region 109269
Tssr109270 11 76494622 to 76494640 18 - TSS region transcription start site region 109270
Tssr109271 11 76494643 to 76494683 40 - TSS region transcription start site region 109271
Tssr103093 11 76494720 to 76494737 17 + TSS region transcription start site region 103093
Tssr109272 11 76494860 to 76494883 23 - TSS region transcription start site region 109272
Tssr109273 11 76494895 to 76494915 20 - TSS region transcription start site region 109273
Tssr109274 11 76494950 to 76495034 84 - TSS region transcription start site region 109274
Tssr109275 11 76495290 to 76495308 18 - TSS region transcription start site region 109275
Tssr109276 11 76495364 to 76495403 39 - TSS region transcription start site region 109276
Tssr109277 11 76497772 to 76497794 22 - TSS region transcription start site region 109277
Tssr103094 11 76497999 to 76498014 15 + TSS region transcription start site region 103094
Tssr109278 11 76509208 to 76509228 20 - TSS region transcription start site region 109278
Tssr109279 11 76509231 to 76509240 9 - TSS region transcription start site region 109279
Tssr109280 11 76509257 to 76509307 50 - TSS region transcription start site region 109280
Tssr109281 11 76509338 to 76509352 14 - TSS region transcription start site region 109281
Tssr109282 11 76509421 to 76509435 14 - TSS region transcription start site region 109282