Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75794194-76252782

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hlb290 11 36391750 to 76087800 39696050 heritable phenotypic marker heart, lung and blood, 290
Doc2b 11 75768966 to 75796049 27083 - protein coding gene double C2, beta
Cpgi3277 11 75794623 to 75797007 2384 CpG island CpG island 3277
Gm12339 11 75794768 to 75825241 30473 + lncRNA gene predicted gene 12339
Tssr109226 11 75796032 to 75796037 5 - TSS region transcription start site region 109226
Tssr109227 11 75796048 to 75796081 33 - TSS region transcription start site region 109227
Rph3al 11 75830999 to 75938429 107430 - protein coding gene rabphilin 3A-like (without C2 domains)
Tssr109228 11 75847696 to 75847702 6 - TSS region transcription start site region 109228
Gm16075 11 75860969 to 75861494 525 + antisense lncRNA gene predicted gene 16075
Tssr109229 11 75906673 to 75906684 11 - TSS region transcription start site region 109229
Tssr109230 11 75906688 to 75906714 26 - TSS region transcription start site region 109230
Tssr109231 11 75925901 to 75925946 45 - TSS region transcription start site region 109231
Tssr109232 11 75926491 to 75926499 8 - TSS region transcription start site region 109232
Tssr109233 11 75937677 to 75937722 45 - TSS region transcription start site region 109233
Tssr109234 11 75937726 to 75937752 26 - TSS region transcription start site region 109234
Tssr103067 11 75960994 to 75961019 25 + TSS region transcription start site region 103067
Cpgi3278 11 75965965 to 75967354 1389 CpG island CpG island 3278
Cpgi3279 11 75999645 to 76000301 656 CpG island CpG island 3279
1700016K19Rik 11 75999912 to 76003569 3657 + protein coding gene RIKEN cDNA 1700016K19 gene
Tssr103068 11 75999928 to 75999946 18 + TSS region transcription start site region 103068
Tssr103069 11 75999952 to 75999977 25 + TSS region transcription start site region 103069
Tssr103070 11 75999980 to 75999994 14 + TSS region transcription start site region 103070
Tssr103071 11 76000006 to 76000011 5 + TSS region transcription start site region 103071
Tssr103072 11 76000016 to 76000023 7 + TSS region transcription start site region 103072
D11Bhm23 11 76010823 to 76010946 123 DNA segment DNA segment, Chr 11, Boehm 23
Tssr103073 11 76012134 to 76012135 1 + TSS region transcription start site region 103073
Tssr109235 11 76015428 to 76015445 17 - TSS region transcription start site region 109235
Tssr109236 11 76015454 to 76015467 13 - TSS region transcription start site region 109236
Rflnb 11 76019194 to 76027782 8588 - protein coding gene refilin B
D11Jcs9 11 76021500 to 76021715 215 DNA segment DNA segment, Chr 11, John C. Schimenti 9
Cpgi3280 11 76026938 to 76028393 1455 CpG island CpG island 3280
Tssr109237 11 76027726 to 76027802 76 - TSS region transcription start site region 109237
Vps53 11 76046226 to 76179630 133404 - protein coding gene VPS53 GARP complex subunit
Tssr109238 11 76069684 to 76069687 3 - TSS region transcription start site region 109238
D11Mit7 11 76087654 to 76087800 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 7
Tssr103074 11 76089430 to 76089439 9 + TSS region transcription start site region 103074
D11Mit321 11 76098373 to 76098570 197 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 321
D11Bhm25 11 76101924 to 76102198 274 DNA segment DNA segment, Chr 11, Boehm 25
Tssr109239 11 76126700 to 76126704 4 - TSS region transcription start site region 109239
Tssr103075 11 76133944 to 76133947 3 + TSS region transcription start site region 103075
Tssr103076 11 76133965 to 76133979 14 + TSS region transcription start site region 103076
Tssr103077 11 76133985 to 76133996 11 + TSS region transcription start site region 103077
Gm12340 11 76144258 to 76144719 461 + pseudogene predicted gene 12340
Gm46252 11 76149956 to 76174620 24664 + lncRNA gene predicted gene, 46252
D11Bhm27 11 76153990 to 76154137 147 DNA segment DNA segment, Chr 11, Boehm 27
Tssr109240 11 76154957 to 76154989 32 - TSS region transcription start site region 109240
Tssr109241 11 76161466 to 76161506 40 - TSS region transcription start site region 109241
D11Bhm28 11 76165031 to 76165221 190 DNA segment DNA segment, Chr 11, Boehm 28
Tssr109242 11 76174443 to 76174447 4 - TSS region transcription start site region 109242
Cpgi3281 11 76178942 to 76180008 1066 CpG island CpG island 3281
Tssr109243 11 76179596 to 76179649 53 - TSS region transcription start site region 109243
Tssr103078 11 76179658 to 76179696 38 + TSS region transcription start site region 103078
Cpgi3282 11 76201557 to 76202643 1086 CpG island CpG island 3282
Tssr103079 11 76202007 to 76202030 23 + TSS region transcription start site region 103079
Fam57a 11 76202026 to 76209417 7391 + protein coding gene family with sequence similarity 57, member A
Tssr103080 11 76202051 to 76202079 28 + TSS region transcription start site region 103080
Tssr103081 11 76202084 to 76202103 19 + TSS region transcription start site region 103081
Tssr109244 11 76202635 to 76202639 4 - TSS region transcription start site region 109244
D11Bhm29 11 76204892 to 76204999 107 DNA segment DNA segment, Chr 11, Boehm 29
D11Jcs10 11 76207241 to 76207424 183 DNA segment DNA segment, Chr 11, John C. Schimenti 10
Gemin4 11 76210571 to 76217572 7001 - protein coding gene gem nuclear organelle associated protein 4
Tssr103082 11 76216338 to 76216342 4 + TSS region transcription start site region 103082
Cpgi3283 11 76216938 to 76217883 945 CpG island CpG island 3283
Tssr109245 11 76217490 to 76217591 101 - TSS region transcription start site region 109245
Dbil5 11 76217613 to 76218665 1052 + protein coding gene diazepam binding inhibitor-like 5
Tssr103083 11 76217617 to 76217636 19 + TSS region transcription start site region 103083
Tssr103084 11 76217647 to 76217670 23 + TSS region transcription start site region 103084
Tssr103085 11 76217671 to 76217676 5 + TSS region transcription start site region 103085
Glod4 11 76220395 to 76243699 23304 - protein coding gene glyoxalase domain containing 4
D11Bhm31 11 76232529 to 76232657 128 DNA segment DNA segment, Chr 11, Boehm 31
D11Bhm32 11 76232550 to 76232640 90 DNA segment DNA segment, Chr 11, Boehm 32
D11Bhm148 11 76233647 to 76233742 95 DNA segment DNA segment, Chr 11, Boehm 148
Cpgi3284 11 76243056 to 76244249 1193 CpG island CpG island 3284
Tssr109246 11 76243656 to 76243685 29 - TSS region transcription start site region 109246
Tssr109247 11 76243687 to 76243704 17 - TSS region transcription start site region 109247
Tssr103086 11 76243726 to 76243776 50 + TSS region transcription start site region 103086
Mrm3 11 76243736 to 76250625 6889 + protein coding gene mitochondrial rRNA methyltransferase 3