Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75778726-76708776

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hlb290 11 36391750 to 76087800 39696050 heritable phenotypic marker heart, lung and blood, 290
Doc2b 11 75768966 to 75796049 27083 - protein coding gene double C2, beta
D11Jcs8 11 75784856 to 75785034 178 DNA segment DNA segment, Chr 11, John C. Schimenti 8
Cpgi3277 11 75794623 to 75797007 2384 CpG island CpG island 3277
Gm12339 11 75794768 to 75825241 30473 + lncRNA gene predicted gene 12339
Tssr109226 11 75796032 to 75796037 5 - TSS region transcription start site region 109226
Tssr109227 11 75796048 to 75796081 33 - TSS region transcription start site region 109227
Rph3al 11 75830999 to 75938429 107430 - protein coding gene rabphilin 3A-like (without C2 domains)
Tssr109228 11 75847696 to 75847702 6 - TSS region transcription start site region 109228
Gm16075 11 75860969 to 75861494 525 + antisense lncRNA gene predicted gene 16075
Tssr109229 11 75906673 to 75906684 11 - TSS region transcription start site region 109229
Tssr109230 11 75906688 to 75906714 26 - TSS region transcription start site region 109230
Tssr109231 11 75925901 to 75925946 45 - TSS region transcription start site region 109231
Tssr109232 11 75926491 to 75926499 8 - TSS region transcription start site region 109232
Tssr109233 11 75937677 to 75937722 45 - TSS region transcription start site region 109233
Tssr109234 11 75937726 to 75937752 26 - TSS region transcription start site region 109234
Tssr103067 11 75960994 to 75961019 25 + TSS region transcription start site region 103067
Cpgi3278 11 75965965 to 75967354 1389 CpG island CpG island 3278
Cpgi3279 11 75999645 to 76000301 656 CpG island CpG island 3279
1700016K19Rik 11 75999912 to 76003569 3657 + protein coding gene RIKEN cDNA 1700016K19 gene
Tssr103068 11 75999928 to 75999946 18 + TSS region transcription start site region 103068
Tssr103069 11 75999952 to 75999977 25 + TSS region transcription start site region 103069
Tssr103070 11 75999980 to 75999994 14 + TSS region transcription start site region 103070
Tssr103071 11 76000006 to 76000011 5 + TSS region transcription start site region 103071
Tssr103072 11 76000016 to 76000023 7 + TSS region transcription start site region 103072
D11Bhm23 11 76010823 to 76010946 123 DNA segment DNA segment, Chr 11, Boehm 23
Tssr103073 11 76012134 to 76012135 1 + TSS region transcription start site region 103073
Tssr109235 11 76015428 to 76015445 17 - TSS region transcription start site region 109235
Tssr109236 11 76015454 to 76015467 13 - TSS region transcription start site region 109236
Rflnb 11 76019194 to 76027782 8588 - protein coding gene refilin B
D11Jcs9 11 76021500 to 76021715 215 DNA segment DNA segment, Chr 11, John C. Schimenti 9
Cpgi3280 11 76026938 to 76028393 1455 CpG island CpG island 3280
Tssr109237 11 76027726 to 76027802 76 - TSS region transcription start site region 109237
Vps53 11 76046226 to 76179630 133404 - protein coding gene VPS53 GARP complex subunit
Tssr109238 11 76069684 to 76069687 3 - TSS region transcription start site region 109238
D11Mit7 11 76087654 to 76087800 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 7
Tssr103074 11 76089430 to 76089439 9 + TSS region transcription start site region 103074
D11Mit321 11 76098373 to 76098570 197 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 321
D11Bhm25 11 76101924 to 76102198 274 DNA segment DNA segment, Chr 11, Boehm 25
Tssr109239 11 76126700 to 76126704 4 - TSS region transcription start site region 109239
Tssr103075 11 76133944 to 76133947 3 + TSS region transcription start site region 103075
Tssr103076 11 76133965 to 76133979 14 + TSS region transcription start site region 103076
Tssr103077 11 76133985 to 76133996 11 + TSS region transcription start site region 103077
Gm12340 11 76144258 to 76144719 461 + pseudogene predicted gene 12340
Gm46252 11 76149956 to 76174620 24664 + lncRNA gene predicted gene, 46252
D11Bhm27 11 76153990 to 76154137 147 DNA segment DNA segment, Chr 11, Boehm 27
Tssr109240 11 76154957 to 76154989 32 - TSS region transcription start site region 109240
Tssr109241 11 76161466 to 76161506 40 - TSS region transcription start site region 109241
D11Bhm28 11 76165031 to 76165221 190 DNA segment DNA segment, Chr 11, Boehm 28
Tssr109242 11 76174443 to 76174447 4 - TSS region transcription start site region 109242
Cpgi3281 11 76178942 to 76180008 1066 CpG island CpG island 3281
Tssr109243 11 76179596 to 76179649 53 - TSS region transcription start site region 109243
Tssr103078 11 76179658 to 76179696 38 + TSS region transcription start site region 103078
Cpgi3282 11 76201557 to 76202643 1086 CpG island CpG island 3282
Tssr103079 11 76202007 to 76202030 23 + TSS region transcription start site region 103079
Fam57a 11 76202026 to 76209417 7391 + protein coding gene family with sequence similarity 57, member A
Tssr103080 11 76202051 to 76202079 28 + TSS region transcription start site region 103080
Tssr103081 11 76202084 to 76202103 19 + TSS region transcription start site region 103081
Tssr109244 11 76202635 to 76202639 4 - TSS region transcription start site region 109244
D11Bhm29 11 76204892 to 76204999 107 DNA segment DNA segment, Chr 11, Boehm 29
D11Jcs10 11 76207241 to 76207424 183 DNA segment DNA segment, Chr 11, John C. Schimenti 10
Gemin4 11 76210571 to 76217572 7001 - protein coding gene gem nuclear organelle associated protein 4
Tssr103082 11 76216338 to 76216342 4 + TSS region transcription start site region 103082
Cpgi3283 11 76216938 to 76217883 945 CpG island CpG island 3283
Tssr109245 11 76217490 to 76217591 101 - TSS region transcription start site region 109245
Dbil5 11 76217613 to 76218665 1052 + protein coding gene diazepam binding inhibitor-like 5
Tssr103083 11 76217617 to 76217636 19 + TSS region transcription start site region 103083
Tssr103084 11 76217647 to 76217670 23 + TSS region transcription start site region 103084
Tssr103085 11 76217671 to 76217676 5 + TSS region transcription start site region 103085
Glod4 11 76220395 to 76243699 23304 - protein coding gene glyoxalase domain containing 4
D11Bhm31 11 76232529 to 76232657 128 DNA segment DNA segment, Chr 11, Boehm 31
D11Bhm32 11 76232550 to 76232640 90 DNA segment DNA segment, Chr 11, Boehm 32
D11Bhm148 11 76233647 to 76233742 95 DNA segment DNA segment, Chr 11, Boehm 148
Cpgi3284 11 76243056 to 76244249 1193 CpG island CpG island 3284
Tssr109246 11 76243656 to 76243685 29 - TSS region transcription start site region 109246
Tssr109247 11 76243687 to 76243704 17 - TSS region transcription start site region 109247
Tssr103086 11 76243726 to 76243776 50 + TSS region transcription start site region 103086
Mrm3 11 76243736 to 76250625 6889 + protein coding gene mitochondrial rRNA methyltransferase 3
Nxn 11 76257226 to 76399141 141915 - protein coding gene nucleoredoxin
D11Bhm34 11 76260950 to 76261060 110 DNA segment DNA segment, Chr 11, Boehm 34
Tssr103087 11 76261456 to 76261461 5 + TSS region transcription start site region 103087
Tssr103088 11 76261474 to 76261501 27 + TSS region transcription start site region 103088
Cpgi3285 11 76263015 to 76263374 359 CpG island CpG island 3285
Tssr109248 11 76263091 to 76263103 12 - TSS region transcription start site region 109248
D11Bhm35 11 76275517 to 76275633 116 DNA segment DNA segment, Chr 11, Boehm 35
Tssr109249 11 76287327 to 76287346 19 - TSS region transcription start site region 109249
Tssr109250 11 76287361 to 76287385 24 - TSS region transcription start site region 109250
D11Bhm36 11 76297364 to 76297527 163 DNA segment DNA segment, Chr 11, Boehm 36
Tssr109251 11 76304176 to 76304181 5 - TSS region transcription start site region 109251
D11Jcs11 11 76322793 to 76323041 248 DNA segment DNA segment, Chr 11, John C. Schimenti 11
C230071I02Rik 11 76339078 to 76346220 7142 unclassified gene RIKEN cDNA C230071I02 gene
Tssr109252 11 76341634 to 76341637 3 - TSS region transcription start site region 109252
Tssr109253 11 76388930 to 76388938 8 - TSS region transcription start site region 109253
Cpgi3286 11 76397820 to 76398007 187 CpG island CpG island 3286
Cpgi3287 11 76398112 to 76399481 1369 CpG island CpG island 3287
Tssr109254 11 76399063 to 76399072 9 - TSS region transcription start site region 109254
Tssr109255 11 76399078 to 76399103 25 - TSS region transcription start site region 109255
Tssr109256 11 76399107 to 76399183 76 - TSS region transcription start site region 109256
Gm40199 11 76399225 to 76404297 5072 + lncRNA gene predicted gene, 40199
Cpgi3288 11 76406646 to 76407556 910 CpG island CpG island 3288
Timm22 11 76406952 to 76416292 9340 + protein coding gene translocase of inner mitochondrial membrane 22
Tssr103089 11 76407165 to 76407201 36 + TSS region transcription start site region 103089
Abr 11 76416732 to 76577739 161007 - protein coding gene active BCR-related gene
D11Jcs13 11 76420769 to 76420938 169 DNA segment DNA segment, Chr 11, John C. Schimenti 13
Tssr109257 11 76422255 to 76422268 13 - TSS region transcription start site region 109257
Cpgi3289 11 76436881 to 76437277 396 CpG island CpG island 3289
Tssr109258 11 76437185 to 76437197 12 - TSS region transcription start site region 109258
Tssr109259 11 76437198 to 76437228 30 - TSS region transcription start site region 109259
Tssr103090 11 76454402 to 76454407 5 + TSS region transcription start site region 103090
Tssr109260 11 76468396 to 76468473 77 - TSS region transcription start site region 109260
Tssr109261 11 76468474 to 76468486 12 - TSS region transcription start site region 109261
Tssr109262 11 76479116 to 76479127 11 - TSS region transcription start site region 109262
Tssr109263 11 76479132 to 76479164 32 - TSS region transcription start site region 109263
Tssr109264 11 76479168 to 76479199 31 - TSS region transcription start site region 109264
Tssr109265 11 76479699 to 76479719 20 - TSS region transcription start site region 109265
Tssr109266 11 76479731 to 76479771 40 - TSS region transcription start site region 109266
Tssr103091 11 76493986 to 76494001 15 + TSS region transcription start site region 103091
Cpgi3290 11 76493995 to 76495520 1525 CpG island CpG island 3290
Tssr103092 11 76494027 to 76494045 18 + TSS region transcription start site region 103092
Tssr109267 11 76494395 to 76494438 43 - TSS region transcription start site region 109267
Tssr109268 11 76494494 to 76494547 53 - TSS region transcription start site region 109268
Tssr109269 11 76494597 to 76494609 12 - TSS region transcription start site region 109269
Tssr109270 11 76494622 to 76494640 18 - TSS region transcription start site region 109270
Tssr109271 11 76494643 to 76494683 40 - TSS region transcription start site region 109271
Tssr103093 11 76494720 to 76494737 17 + TSS region transcription start site region 103093
Tssr109272 11 76494860 to 76494883 23 - TSS region transcription start site region 109272
Tssr109273 11 76494895 to 76494915 20 - TSS region transcription start site region 109273
Tssr109274 11 76494950 to 76495034 84 - TSS region transcription start site region 109274
Tssr109275 11 76495290 to 76495308 18 - TSS region transcription start site region 109275
Tssr109276 11 76495364 to 76495403 39 - TSS region transcription start site region 109276
Tssr109277 11 76497772 to 76497794 22 - TSS region transcription start site region 109277
Tssr103094 11 76497999 to 76498014 15 + TSS region transcription start site region 103094
Tssr109278 11 76509208 to 76509228 20 - TSS region transcription start site region 109278
Tssr109279 11 76509231 to 76509240 9 - TSS region transcription start site region 109279
Tssr109280 11 76509257 to 76509307 50 - TSS region transcription start site region 109280
Tssr109281 11 76509338 to 76509352 14 - TSS region transcription start site region 109281
Tssr109282 11 76509421 to 76509435 14 - TSS region transcription start site region 109282
Gm12341 11 76514069 to 76514571 502 + pseudogene predicted gene 12341
Tssr109283 11 76528114 to 76528119 5 - TSS region transcription start site region 109283
Tssr109284 11 76541876 to 76541913 37 - TSS region transcription start site region 109284
Tssr103095 11 76547949 to 76547997 48 + TSS region transcription start site region 103095
Tssr109285 11 76548435 to 76548439 4 - TSS region transcription start site region 109285
Cpgi3291 11 76570836 to 76571815 979 CpG island CpG island 3291
Tssr109286 11 76571263 to 76571273 10 - TSS region transcription start site region 109286
Tssr109287 11 76571302 to 76571309 7 - TSS region transcription start site region 109287
Tssr109288 11 76571343 to 76571364 21 - TSS region transcription start site region 109288
Tssr109289 11 76571373 to 76571403 30 - TSS region transcription start site region 109289
Tssr109290 11 76571484 to 76571502 18 - TSS region transcription start site region 109290
Tssr109291 11 76571527 to 76571558 31 - TSS region transcription start site region 109291
Tssr109292 11 76571604 to 76571620 16 - TSS region transcription start site region 109292
Tssr109293 11 76571624 to 76571636 12 - TSS region transcription start site region 109293
Tssr109294 11 76577672 to 76577695 23 - TSS region transcription start site region 109294
Tssr109295 11 76577701 to 76577717 16 - TSS region transcription start site region 109295
Tssr109296 11 76578006 to 76578019 13 - TSS region transcription start site region 109296
Tssr109297 11 76578025 to 76578048 23 - TSS region transcription start site region 109297
D11Mit322 11 76579323 to 76579434 111 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 322
Tssr109298 11 76584284 to 76584288 4 - TSS region transcription start site region 109298
Tssr103096 11 76601279 to 76601283 4 + TSS region transcription start site region 103096
Rpl36-ps2 11 76601319 to 76601629 310 + pseudogene ribosomal protein L36, pseudogene 2
Tssr109299 11 76604620 to 76604639 19 - TSS region transcription start site region 109299
Tssr109300 11 76608543 to 76608546 3 - TSS region transcription start site region 109300
Tssr109301 11 76611142 to 76611146 4 - TSS region transcription start site region 109301
Gm26780 11 76614467 to 76622204 7737 + lincRNA gene predicted gene, 26780
Tssr109302 11 76617469 to 76617481 12 - TSS region transcription start site region 109302
Cpgi3292 11 76622014 to 76624057 2043 CpG island CpG island 3292
Gm18373 11 76622208 to 76623197 989 - pseudogene predicted gene, 18373
Tssr109303 11 76622215 to 76622260 45 - TSS region transcription start site region 109303
Tssr103097 11 76622315 to 76622362 47 + TSS region transcription start site region 103097
Tssr109304 11 76623296 to 76623309 13 - TSS region transcription start site region 109304
Tssr109305 11 76623312 to 76623354 42 - TSS region transcription start site region 109305
Tssr109306 11 76623511 to 76623557 46 - TSS region transcription start site region 109306
Gm46288 11 76626653 to 76659995 33342 + lncRNA gene predicted gene, 46288
Cpgi3293 11 76645975 to 76646350 375 CpG island CpG island 3293
Gm36558 11 76661893 to 76662347 454 - lncRNA gene predicted gene, 36558
Cpgi3294 11 76666230 to 76666659 429 CpG island CpG island 3294
Cpgi3295 11 76672267 to 76673524 1257 CpG island CpG island 3295
Tssr103098 11 76672456 to 76672461 5 + TSS region transcription start site region 103098
Bhlha9 11 76672470 to 76673676 1206 + protein coding gene basic helix-loop-helix family, member a9
Tssr103099 11 76679642 to 76679647 5 + TSS region transcription start site region 103099
Tssr103100 11 76679757 to 76679787 30 + TSS region transcription start site region 103100
Tssr103101 11 76679831 to 76679840 9 + TSS region transcription start site region 103101
Trarg1 11 76679873 to 76698664 18791 + protein coding gene trafficking regulator of GLUT4 (SLC2A4) 1
Tssr103102 11 76679900 to 76679903 3 + TSS region transcription start site region 103102
Tssr103103 11 76679905 to 76679922 17 + TSS region transcription start site region 103103
Tssr103104 11 76679961 to 76679990 29 + TSS region transcription start site region 103104
Tssr103105 11 76697501 to 76697505 4 + TSS region transcription start site region 103105
Cpgi3296 11 76700103 to 76700600 497 CpG island CpG island 3296