Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75626484-77516502

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413 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hlb290 11 36391750 to 76087800 39696050 heritable phenotypic marker heart, lung and blood, 290
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
Pitpna 11 75588097 to 75628804 40707 + protein coding gene phosphatidylinositol transfer protein, alpha
Tssr109220 11 75626717 to 75626733 16 - TSS region transcription start site region 109220
Cpgi3270 11 75630554 to 75631378 824 CpG island CpG island 3270
Tssr109221 11 75630722 to 75630763 41 - TSS region transcription start site region 109221
Tssr103007 11 75630759 to 75630770 11 + TSS region transcription start site region 103007
Tssr103008 11 75630774 to 75630803 29 + TSS region transcription start site region 103008
Tssr109222 11 75630798 to 75630807 9 - TSS region transcription start site region 109222
Tssr3577 11 75630805 to 75630811 6 + TSS region transcription start site region 3577
Tssr103009 11 75630815 to 75630830 15 + TSS region transcription start site region 103009
Tssr103010 11 75630832 to 75630851 19 + TSS region transcription start site region 103010
Tssr103011 11 75630948 to 75630959 11 + TSS region transcription start site region 103011
Tssr103012 11 75630974 to 75631076 102 + TSS region transcription start site region 103012
Inpp5k 11 75630988 to 75648871 17883 + protein coding gene inositol polyphosphate 5-phosphatase K
Tssr103013 11 75631086 to 75631100 14 + TSS region transcription start site region 103013
Tssr103014 11 75636759 to 75636814 55 + TSS region transcription start site region 103014
Tssr103015 11 75636817 to 75636848 31 + TSS region transcription start site region 103015
Tssr103016 11 75642557 to 75642590 33 + TSS region transcription start site region 103016
Tssr3578 11 75650488 to 75650493 5 + TSS region transcription start site region 3578
Tssr103017 11 75650501 to 75650544 43 + TSS region transcription start site region 103017
Myo1c 11 75650504 to 75673910 23406 + protein coding gene myosin IC
Tssr103018 11 75650553 to 75650570 17 + TSS region transcription start site region 103018
Tssr103019 11 75650612 to 75650624 12 + TSS region transcription start site region 103019
Tssr103020 11 75651199 to 75651210 11 + TSS region transcription start site region 103020
Tssr103021 11 75651221 to 75651246 25 + TSS region transcription start site region 103021
Cpgi3271 11 75651265 to 75652263 998 CpG island CpG island 3271
Tssr103022 11 75651504 to 75651537 33 + TSS region transcription start site region 103022
Tssr103023 11 75651541 to 75651613 72 + TSS region transcription start site region 103023
Tssr103024 11 75651619 to 75651637 18 + TSS region transcription start site region 103024
Tssr103025 11 75652201 to 75652242 41 + TSS region transcription start site region 103025
Cpgi3272 11 75653737 to 75654716 979 CpG island CpG island 3272
Cpgi3273 11 75655473 to 75656587 1114 CpG island CpG island 3273
Tssr103026 11 75655751 to 75655775 24 + TSS region transcription start site region 103026
Tssr103027 11 75655845 to 75655856 11 + TSS region transcription start site region 103027
Tssr103028 11 75655911 to 75655918 7 + TSS region transcription start site region 103028
Tssr103029 11 75655928 to 75655937 9 + TSS region transcription start site region 103029
Tssr103030 11 75655979 to 75656000 21 + TSS region transcription start site region 103030
Tssr103031 11 75656003 to 75656037 34 + TSS region transcription start site region 103031
Tssr103032 11 75656103 to 75656177 74 + TSS region transcription start site region 103032
Tssr103033 11 75661614 to 75661623 9 + TSS region transcription start site region 103033
Cpgi3274 11 75678827 to 75680010 1183 CpG island CpG island 3274
Crk 11 75679259 to 75706908 27649 + protein coding gene v-crk avian sarcoma virus CT10 oncogene homolog
Tssr103034 11 75679269 to 75679327 58 + TSS region transcription start site region 103034
Tssr103035 11 75679628 to 75679637 9 + TSS region transcription start site region 103035
Tssr103036 11 75692602 to 75692620 18 + TSS region transcription start site region 103036
D11Bhm22 11 75729816 to 75729996 180 DNA segment DNA segment, Chr 11, Boehm 22
Cpgi3275 11 75732538 to 75733787 1249 CpG island CpG island 3275
Ywhae 11 75732887 to 75765841 32954 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
Tssr103037 11 75732908 to 75732975 67 + TSS region transcription start site region 103037
Tssr103038 11 75733037 to 75733043 6 + TSS region transcription start site region 103038
Tssr103039 11 75734570 to 75734575 5 + TSS region transcription start site region 103039
Tssr103040 11 75742246 to 75742262 16 + TSS region transcription start site region 103040
Gm26836 11 75745072 to 75761195 16123 - lincRNA gene predicted gene, 26836
Tssr103041 11 75747446 to 75747486 40 + TSS region transcription start site region 103041
Tssr109223 11 75751906 to 75751945 39 - TSS region transcription start site region 109223
Tssr103042 11 75751947 to 75752007 60 + TSS region transcription start site region 103042
Tssr103043 11 75752034 to 75752057 23 + TSS region transcription start site region 103043
Tssr103044 11 75754865 to 75754869 4 + TSS region transcription start site region 103044
Tssr103045 11 75755565 to 75755628 63 + TSS region transcription start site region 103045
Tssr103046 11 75756809 to 75756847 38 + TSS region transcription start site region 103046
Tssr103047 11 75756861 to 75756936 75 + TSS region transcription start site region 103047
Tssr109224 11 75756863 to 75756893 30 - TSS region transcription start site region 109224
Tssr103048 11 75756948 to 75756974 26 + TSS region transcription start site region 103048
Tssr103049 11 75756976 to 75757002 26 + TSS region transcription start site region 103049
Tssr103050 11 75758838 to 75758851 13 + TSS region transcription start site region 103050
Tssr103051 11 75758878 to 75758889 11 + TSS region transcription start site region 103051
Tssr103052 11 75758900 to 75758907 7 + TSS region transcription start site region 103052
Tssr103053 11 75759290 to 75759336 46 + TSS region transcription start site region 103053
Tssr103054 11 75759339 to 75759397 58 + TSS region transcription start site region 103054
Tssr103055 11 75764628 to 75764639 11 + TSS region transcription start site region 103055
Tssr109225 11 75764667 to 75764727 60 - TSS region transcription start site region 109225
Tssr103056 11 75764676 to 75764752 76 + TSS region transcription start site region 103056
Tssr103057 11 75764763 to 75764800 37 + TSS region transcription start site region 103057
Tssr103058 11 75764832 to 75764847 15 + TSS region transcription start site region 103058
Tssr103059 11 75764966 to 75764984 18 + TSS region transcription start site region 103059
Tssr103060 11 75765092 to 75765104 12 + TSS region transcription start site region 103060
Tssr103061 11 75765190 to 75765201 11 + TSS region transcription start site region 103061
Tssr103062 11 75765288 to 75765299 11 + TSS region transcription start site region 103062
Tssr103063 11 75765338 to 75765349 11 + TSS region transcription start site region 103063
Tssr103064 11 75765362 to 75765373 11 + TSS region transcription start site region 103064
Tssr103065 11 75765376 to 75765386 10 + TSS region transcription start site region 103065
Tssr103066 11 75765389 to 75765415 26 + TSS region transcription start site region 103066
Tssr3579 11 75765484 to 75765499 15 + TSS region transcription start site region 3579
Doc2b 11 75768966 to 75796049 27083 - protein coding gene double C2, beta
Cpgi3276 11 75769178 to 75769349 171 CpG island CpG island 3276
D11Jcs8 11 75784856 to 75785034 178 DNA segment DNA segment, Chr 11, John C. Schimenti 8
Cpgi3277 11 75794623 to 75797007 2384 CpG island CpG island 3277
Gm12339 11 75794768 to 75825241 30473 + lncRNA gene predicted gene 12339
Tssr109226 11 75796032 to 75796037 5 - TSS region transcription start site region 109226
Tssr109227 11 75796048 to 75796081 33 - TSS region transcription start site region 109227
Rph3al 11 75830999 to 75938429 107430 - protein coding gene rabphilin 3A-like (without C2 domains)
Tssr109228 11 75847696 to 75847702 6 - TSS region transcription start site region 109228
Gm16075 11 75860969 to 75861494 525 + antisense lncRNA gene predicted gene 16075
Tssr109229 11 75906673 to 75906684 11 - TSS region transcription start site region 109229
Tssr109230 11 75906688 to 75906714 26 - TSS region transcription start site region 109230
Tssr109231 11 75925901 to 75925946 45 - TSS region transcription start site region 109231
Tssr109232 11 75926491 to 75926499 8 - TSS region transcription start site region 109232
Tssr109233 11 75937677 to 75937722 45 - TSS region transcription start site region 109233
Tssr109234 11 75937726 to 75937752 26 - TSS region transcription start site region 109234
Tssr103067 11 75960994 to 75961019 25 + TSS region transcription start site region 103067
Cpgi3278 11 75965965 to 75967354 1389 CpG island CpG island 3278
Cpgi3279 11 75999645 to 76000301 656 CpG island CpG island 3279
1700016K19Rik 11 75999912 to 76003569 3657 + protein coding gene RIKEN cDNA 1700016K19 gene
Tssr103068 11 75999928 to 75999946 18 + TSS region transcription start site region 103068
Tssr103069 11 75999952 to 75999977 25 + TSS region transcription start site region 103069
Tssr103070 11 75999980 to 75999994 14 + TSS region transcription start site region 103070
Tssr103071 11 76000006 to 76000011 5 + TSS region transcription start site region 103071
Tssr103072 11 76000016 to 76000023 7 + TSS region transcription start site region 103072
D11Bhm23 11 76010823 to 76010946 123 DNA segment DNA segment, Chr 11, Boehm 23
Tssr103073 11 76012134 to 76012135 1 + TSS region transcription start site region 103073
Tssr109235 11 76015428 to 76015445 17 - TSS region transcription start site region 109235
Tssr109236 11 76015454 to 76015467 13 - TSS region transcription start site region 109236
Rflnb 11 76019194 to 76027782 8588 - protein coding gene refilin B
D11Jcs9 11 76021500 to 76021715 215 DNA segment DNA segment, Chr 11, John C. Schimenti 9
Cpgi3280 11 76026938 to 76028393 1455 CpG island CpG island 3280
Tssr109237 11 76027726 to 76027802 76 - TSS region transcription start site region 109237
Vps53 11 76046226 to 76179630 133404 - protein coding gene VPS53 GARP complex subunit
Tssr109238 11 76069684 to 76069687 3 - TSS region transcription start site region 109238
D11Mit7 11 76087654 to 76087800 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 7
Tssr103074 11 76089430 to 76089439 9 + TSS region transcription start site region 103074
D11Mit321 11 76098373 to 76098570 197 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 321
D11Bhm25 11 76101924 to 76102198 274 DNA segment DNA segment, Chr 11, Boehm 25
Tssr109239 11 76126700 to 76126704 4 - TSS region transcription start site region 109239
Tssr103075 11 76133944 to 76133947 3 + TSS region transcription start site region 103075
Tssr103076 11 76133965 to 76133979 14 + TSS region transcription start site region 103076
Tssr103077 11 76133985 to 76133996 11 + TSS region transcription start site region 103077
Gm12340 11 76144258 to 76144719 461 + pseudogene predicted gene 12340
Gm46252 11 76149956 to 76174620 24664 + lncRNA gene predicted gene, 46252
D11Bhm27 11 76153990 to 76154137 147 DNA segment DNA segment, Chr 11, Boehm 27
Tssr109240 11 76154957 to 76154989 32 - TSS region transcription start site region 109240
Tssr109241 11 76161466 to 76161506 40 - TSS region transcription start site region 109241
D11Bhm28 11 76165031 to 76165221 190 DNA segment DNA segment, Chr 11, Boehm 28
Tssr109242 11 76174443 to 76174447 4 - TSS region transcription start site region 109242
Cpgi3281 11 76178942 to 76180008 1066 CpG island CpG island 3281
Tssr109243 11 76179596 to 76179649 53 - TSS region transcription start site region 109243
Tssr103078 11 76179658 to 76179696 38 + TSS region transcription start site region 103078
Cpgi3282 11 76201557 to 76202643 1086 CpG island CpG island 3282
Tssr103079 11 76202007 to 76202030 23 + TSS region transcription start site region 103079
Fam57a 11 76202026 to 76209417 7391 + protein coding gene family with sequence similarity 57, member A
Tssr103080 11 76202051 to 76202079 28 + TSS region transcription start site region 103080
Tssr103081 11 76202084 to 76202103 19 + TSS region transcription start site region 103081
Tssr109244 11 76202635 to 76202639 4 - TSS region transcription start site region 109244
D11Bhm29 11 76204892 to 76204999 107 DNA segment DNA segment, Chr 11, Boehm 29
D11Jcs10 11 76207241 to 76207424 183 DNA segment DNA segment, Chr 11, John C. Schimenti 10
Gemin4 11 76210571 to 76217572 7001 - protein coding gene gem nuclear organelle associated protein 4
Tssr103082 11 76216338 to 76216342 4 + TSS region transcription start site region 103082
Cpgi3283 11 76216938 to 76217883 945 CpG island CpG island 3283
Tssr109245 11 76217490 to 76217591 101 - TSS region transcription start site region 109245
Dbil5 11 76217613 to 76218665 1052 + protein coding gene diazepam binding inhibitor-like 5
Tssr103083 11 76217617 to 76217636 19 + TSS region transcription start site region 103083
Tssr103084 11 76217647 to 76217670 23 + TSS region transcription start site region 103084
Tssr103085 11 76217671 to 76217676 5 + TSS region transcription start site region 103085
Glod4 11 76220395 to 76243699 23304 - protein coding gene glyoxalase domain containing 4
D11Bhm31 11 76232529 to 76232657 128 DNA segment DNA segment, Chr 11, Boehm 31
D11Bhm32 11 76232550 to 76232640 90 DNA segment DNA segment, Chr 11, Boehm 32
D11Bhm148 11 76233647 to 76233742 95 DNA segment DNA segment, Chr 11, Boehm 148
Cpgi3284 11 76243056 to 76244249 1193 CpG island CpG island 3284
Tssr109246 11 76243656 to 76243685 29 - TSS region transcription start site region 109246
Tssr109247 11 76243687 to 76243704 17 - TSS region transcription start site region 109247
Tssr103086 11 76243726 to 76243776 50 + TSS region transcription start site region 103086
Mrm3 11 76243736 to 76250625 6889 + protein coding gene mitochondrial rRNA methyltransferase 3
Nxn 11 76257226 to 76399141 141915 - protein coding gene nucleoredoxin
D11Bhm34 11 76260950 to 76261060 110 DNA segment DNA segment, Chr 11, Boehm 34
Tssr103087 11 76261456 to 76261461 5 + TSS region transcription start site region 103087
Tssr103088 11 76261474 to 76261501 27 + TSS region transcription start site region 103088
Cpgi3285 11 76263015 to 76263374 359 CpG island CpG island 3285
Tssr109248 11 76263091 to 76263103 12 - TSS region transcription start site region 109248
D11Bhm35 11 76275517 to 76275633 116 DNA segment DNA segment, Chr 11, Boehm 35
Tssr109249 11 76287327 to 76287346 19 - TSS region transcription start site region 109249
Tssr109250 11 76287361 to 76287385 24 - TSS region transcription start site region 109250
D11Bhm36 11 76297364 to 76297527 163 DNA segment DNA segment, Chr 11, Boehm 36
Tssr109251 11 76304176 to 76304181 5 - TSS region transcription start site region 109251
D11Jcs11 11 76322793 to 76323041 248 DNA segment DNA segment, Chr 11, John C. Schimenti 11
C230071I02Rik 11 76339078 to 76346220 7142 unclassified gene RIKEN cDNA C230071I02 gene
Tssr109252 11 76341634 to 76341637 3 - TSS region transcription start site region 109252
Tssr109253 11 76388930 to 76388938 8 - TSS region transcription start site region 109253
Cpgi3286 11 76397820 to 76398007 187 CpG island CpG island 3286
Cpgi3287 11 76398112 to 76399481 1369 CpG island CpG island 3287
Tssr109254 11 76399063 to 76399072 9 - TSS region transcription start site region 109254
Tssr109255 11 76399078 to 76399103 25 - TSS region transcription start site region 109255
Tssr109256 11 76399107 to 76399183 76 - TSS region transcription start site region 109256
Gm40199 11 76399225 to 76404297 5072 + lncRNA gene predicted gene, 40199
Cpgi3288 11 76406646 to 76407556 910 CpG island CpG island 3288
Timm22 11 76406952 to 76416292 9340 + protein coding gene translocase of inner mitochondrial membrane 22
Tssr103089 11 76407165 to 76407201 36 + TSS region transcription start site region 103089
Abr 11 76416732 to 76577739 161007 - protein coding gene active BCR-related gene
D11Jcs13 11 76420769 to 76420938 169 DNA segment DNA segment, Chr 11, John C. Schimenti 13
Tssr109257 11 76422255 to 76422268 13 - TSS region transcription start site region 109257
Cpgi3289 11 76436881 to 76437277 396 CpG island CpG island 3289
Tssr109258 11 76437185 to 76437197 12 - TSS region transcription start site region 109258
Tssr109259 11 76437198 to 76437228 30 - TSS region transcription start site region 109259
Tssr103090 11 76454402 to 76454407 5 + TSS region transcription start site region 103090
Tssr109260 11 76468396 to 76468473 77 - TSS region transcription start site region 109260
Tssr109261 11 76468474 to 76468486 12 - TSS region transcription start site region 109261
Tssr109262 11 76479116 to 76479127 11 - TSS region transcription start site region 109262
Tssr109263 11 76479132 to 76479164 32 - TSS region transcription start site region 109263
Tssr109264 11 76479168 to 76479199 31 - TSS region transcription start site region 109264
Tssr109265 11 76479699 to 76479719 20 - TSS region transcription start site region 109265