Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75470376-76060386

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlcd2 11 75468024 to 75470899 2875 + protein coding gene TLC domain containing 2
Tssr109208 11 75470774 to 75470777 3 - TSS region transcription start site region 109208
Cpgi3265 11 75486562 to 75487332 770 CpG island CpG island 3265
Tssr102955 11 75486793 to 75486808 15 + TSS region transcription start site region 102955
Tssr102956 11 75486813 to 75486866 53 + TSS region transcription start site region 102956
Prpf8 11 75486816 to 75509449 22633 + protein coding gene pre-mRNA processing factor 8
Tssr102957 11 75487133 to 75487150 17 + TSS region transcription start site region 102957
Tssr102958 11 75489393 to 75489397 4 + TSS region transcription start site region 102958
Tssr102959 11 75490454 to 75490475 21 + TSS region transcription start site region 102959
Tssr102960 11 75509950 to 75509997 47 + TSS region transcription start site region 102960
Tssr102961 11 75510077 to 75510104 27 + TSS region transcription start site region 102961
Cpgi3266 11 75510084 to 75510951 867 CpG island CpG island 3266
Rilp 11 75510094 to 75513168 3074 + protein coding gene Rab interacting lysosomal protein
Tssr102962 11 75510106 to 75510128 22 + TSS region transcription start site region 102962
Tssr102963 11 75513530 to 75513541 11 + TSS region transcription start site region 102963
Scarf1 11 75513540 to 75526582 13042 + protein coding gene scavenger receptor class F, member 1
Tssr102964 11 75513548 to 75513582 34 + TSS region transcription start site region 102964
Cpgi3267 11 75515194 to 75515744 550 CpG island CpG island 3267
Tssr102965 11 75516371 to 75516378 7 + TSS region transcription start site region 102965
Gm45606 11 75530277 to 75533071 2794 - antisense lncRNA gene predicted gene 45606
Cpgi3268 11 75530627 to 75532878 2251 CpG island CpG island 3268
Tssr102966 11 75531690 to 75531732 42 + TSS region transcription start site region 102966
Slc43a2 11 75531694 to 75577575 45881 + protein coding gene solute carrier family 43, member 2
Tssr109209 11 75531898 to 75531909 11 - TSS region transcription start site region 109209
Tssr102967 11 75532006 to 75532026 20 + TSS region transcription start site region 102967
Tssr102968 11 75532099 to 75532125 26 + TSS region transcription start site region 102968
Tssr102969 11 75532127 to 75532151 24 + TSS region transcription start site region 102969
Tssr102970 11 75532164 to 75532187 23 + TSS region transcription start site region 102970
Tssr102971 11 75532196 to 75532220 24 + TSS region transcription start site region 102971
Tssr102972 11 75532232 to 75532248 16 + TSS region transcription start site region 102972
Tssr102973 11 75532268 to 75532280 12 + TSS region transcription start site region 102973
Tssr109210 11 75533024 to 75533035 11 - TSS region transcription start site region 109210
Tssr109211 11 75533063 to 75533082 19 - TSS region transcription start site region 109211
Tssr109212 11 75533091 to 75533108 17 - TSS region transcription start site region 109212
Tssr102974 11 75533403 to 75533414 11 + TSS region transcription start site region 102974
Tssr102975 11 75533455 to 75533530 75 + TSS region transcription start site region 102975
Tssr102976 11 75550132 to 75550155 23 + TSS region transcription start site region 102976
Mir3971 11 75551429 to 75551511 82 + miRNA gene microRNA 3971
Tssr3576 11 75561085 to 75561110 25 - TSS region transcription start site region 3576
D11Jcs7 11 75563645 to 75563894 249 DNA segment DNA segment, Chr 11, John C. Schimenti 7
Tssr102977 11 75563653 to 75563666 13 + TSS region transcription start site region 102977
Tssr102978 11 75566859 to 75566875 16 + TSS region transcription start site region 102978
Tssr102979 11 75567979 to 75567993 14 + TSS region transcription start site region 102979
Tssr102980 11 75572459 to 75572485 26 + TSS region transcription start site region 102980
Tssr102981 11 75572512 to 75572545 33 + TSS region transcription start site region 102981
Tssr102982 11 75572719 to 75572735 16 + TSS region transcription start site region 102982
Tssr102983 11 75572746 to 75572791 45 + TSS region transcription start site region 102983
Tssr102984 11 75572812 to 75572824 12 + TSS region transcription start site region 102984
Tssr109213 11 75573228 to 75573244 16 - TSS region transcription start site region 109213
Tssr102985 11 75576772 to 75576786 14 + TSS region transcription start site region 102985
Tssr102986 11 75576890 to 75576909 19 + TSS region transcription start site region 102986
Tssr102987 11 75576937 to 75576950 13 + TSS region transcription start site region 102987
Tssr102988 11 75577016 to 75577045 29 + TSS region transcription start site region 102988
Tssr102989 11 75577090 to 75577124 34 + TSS region transcription start site region 102989
Tssr102990 11 75577127 to 75577138 11 + TSS region transcription start site region 102990
Cpgi3269 11 75587828 to 75588845 1017 CpG island CpG island 3269
Tssr102991 11 75588064 to 75588151 87 + TSS region transcription start site region 102991
Pitpna 11 75588097 to 75628804 40707 + protein coding gene phosphatidylinositol transfer protein, alpha
Tssr102992 11 75588153 to 75588177 24 + TSS region transcription start site region 102992
4931413K12Rik 11 75590024 to 75594766 4742 - lncRNA gene RIKEN cDNA 4931413K12 gene
Tssr109214 11 75594736 to 75594741 5 - TSS region transcription start site region 109214
Tssr109215 11 75594743 to 75594760 17 - TSS region transcription start site region 109215
Tssr109216 11 75594763 to 75594764 1 - TSS region transcription start site region 109216
Tssr109217 11 75594765 to 75594783 18 - TSS region transcription start site region 109217
Tssr109218 11 75594793 to 75594804 11 - TSS region transcription start site region 109218
Tssr102993 11 75594910 to 75594921 11 + TSS region transcription start site region 102993
Tssr102994 11 75596124 to 75596146 22 + TSS region transcription start site region 102994
Tssr102995 11 75596150 to 75596162 12 + TSS region transcription start site region 102995
Tssr102996 11 75598233 to 75598265 32 + TSS region transcription start site region 102996
Tssr102997 11 75598274 to 75598302 28 + TSS region transcription start site region 102997
Tssr102998 11 75598895 to 75598907 12 + TSS region transcription start site region 102998
Gm12338 11 75599763 to 75599954 191 - pseudogene predicted gene 12338
Tssr109219 11 75600046 to 75600051 5 - TSS region transcription start site region 109219
Tssr102999 11 75601479 to 75601500 21 + TSS region transcription start site region 102999
Tssr103000 11 75607882 to 75607895 13 + TSS region transcription start site region 103000
Tssr103001 11 75612704 to 75612714 10 + TSS region transcription start site region 103001
Tssr103002 11 75615044 to 75615047 3 + TSS region transcription start site region 103002
Tssr103003 11 75619521 to 75619538 17 + TSS region transcription start site region 103003
Tssr103004 11 75620660 to 75620682 22 + TSS region transcription start site region 103004
Tssr103005 11 75620694 to 75620712 18 + TSS region transcription start site region 103005
Tssr103006 11 75626291 to 75626329 38 + TSS region transcription start site region 103006
Tssr109220 11 75626717 to 75626733 16 - TSS region transcription start site region 109220
Cpgi3270 11 75630554 to 75631378 824 CpG island CpG island 3270
Tssr109221 11 75630722 to 75630763 41 - TSS region transcription start site region 109221
Tssr103007 11 75630759 to 75630770 11 + TSS region transcription start site region 103007
Tssr103008 11 75630774 to 75630803 29 + TSS region transcription start site region 103008
Tssr109222 11 75630798 to 75630807 9 - TSS region transcription start site region 109222
Tssr3577 11 75630805 to 75630811 6 + TSS region transcription start site region 3577
Tssr103009 11 75630815 to 75630830 15 + TSS region transcription start site region 103009
Tssr103010 11 75630832 to 75630851 19 + TSS region transcription start site region 103010
Tssr103011 11 75630948 to 75630959 11 + TSS region transcription start site region 103011
Tssr103012 11 75630974 to 75631076 102 + TSS region transcription start site region 103012
Inpp5k 11 75630988 to 75648871 17883 + protein coding gene inositol polyphosphate 5-phosphatase K
Tssr103013 11 75631086 to 75631100 14 + TSS region transcription start site region 103013
Tssr103014 11 75636759 to 75636814 55 + TSS region transcription start site region 103014
Tssr103015 11 75636817 to 75636848 31 + TSS region transcription start site region 103015
Tssr103016 11 75642557 to 75642590 33 + TSS region transcription start site region 103016
Tssr3578 11 75650488 to 75650493 5 + TSS region transcription start site region 3578
Tssr103017 11 75650501 to 75650544 43 + TSS region transcription start site region 103017
Myo1c 11 75650504 to 75673910 23406 + protein coding gene myosin IC
Tssr103018 11 75650553 to 75650570 17 + TSS region transcription start site region 103018
Tssr103019 11 75650612 to 75650624 12 + TSS region transcription start site region 103019
Tssr103020 11 75651199 to 75651210 11 + TSS region transcription start site region 103020
Tssr103021 11 75651221 to 75651246 25 + TSS region transcription start site region 103021
Cpgi3271 11 75651265 to 75652263 998 CpG island CpG island 3271
Tssr103022 11 75651504 to 75651537 33 + TSS region transcription start site region 103022
Tssr103023 11 75651541 to 75651613 72 + TSS region transcription start site region 103023
Tssr103024 11 75651619 to 75651637 18 + TSS region transcription start site region 103024
Tssr103025 11 75652201 to 75652242 41 + TSS region transcription start site region 103025
Cpgi3272 11 75653737 to 75654716 979 CpG island CpG island 3272
Cpgi3273 11 75655473 to 75656587 1114 CpG island CpG island 3273
Tssr103026 11 75655751 to 75655775 24 + TSS region transcription start site region 103026
Tssr103027 11 75655845 to 75655856 11 + TSS region transcription start site region 103027
Tssr103028 11 75655911 to 75655918 7 + TSS region transcription start site region 103028
Tssr103029 11 75655928 to 75655937 9 + TSS region transcription start site region 103029
Tssr103030 11 75655979 to 75656000 21 + TSS region transcription start site region 103030
Tssr103031 11 75656003 to 75656037 34 + TSS region transcription start site region 103031
Tssr103032 11 75656103 to 75656177 74 + TSS region transcription start site region 103032
Tssr103033 11 75661614 to 75661623 9 + TSS region transcription start site region 103033
Cpgi3274 11 75678827 to 75680010 1183 CpG island CpG island 3274
Crk 11 75679259 to 75706908 27649 + protein coding gene v-crk avian sarcoma virus CT10 oncogene homolog
Tssr103034 11 75679269 to 75679327 58 + TSS region transcription start site region 103034
Tssr103035 11 75679628 to 75679637 9 + TSS region transcription start site region 103035
Tssr103036 11 75692602 to 75692620 18 + TSS region transcription start site region 103036
D11Bhm22 11 75729816 to 75729996 180 DNA segment DNA segment, Chr 11, Boehm 22
Cpgi3275 11 75732538 to 75733787 1249 CpG island CpG island 3275
Ywhae 11 75732887 to 75765841 32954 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
Tssr103037 11 75732908 to 75732975 67 + TSS region transcription start site region 103037
Tssr103038 11 75733037 to 75733043 6 + TSS region transcription start site region 103038
Tssr103039 11 75734570 to 75734575 5 + TSS region transcription start site region 103039
Tssr103040 11 75742246 to 75742262 16 + TSS region transcription start site region 103040
Gm26836 11 75745072 to 75761195 16123 - lincRNA gene predicted gene, 26836
Tssr103041 11 75747446 to 75747486 40 + TSS region transcription start site region 103041
Tssr109223 11 75751906 to 75751945 39 - TSS region transcription start site region 109223
Tssr103042 11 75751947 to 75752007 60 + TSS region transcription start site region 103042
Tssr103043 11 75752034 to 75752057 23 + TSS region transcription start site region 103043
Tssr103044 11 75754865 to 75754869 4 + TSS region transcription start site region 103044
Tssr103045 11 75755565 to 75755628 63 + TSS region transcription start site region 103045
Tssr103046 11 75756809 to 75756847 38 + TSS region transcription start site region 103046
Tssr103047 11 75756861 to 75756936 75 + TSS region transcription start site region 103047
Tssr109224 11 75756863 to 75756893 30 - TSS region transcription start site region 109224
Tssr103048 11 75756948 to 75756974 26 + TSS region transcription start site region 103048
Tssr103049 11 75756976 to 75757002 26 + TSS region transcription start site region 103049
Tssr103050 11 75758838 to 75758851 13 + TSS region transcription start site region 103050
Tssr103051 11 75758878 to 75758889 11 + TSS region transcription start site region 103051
Tssr103052 11 75758900 to 75758907 7 + TSS region transcription start site region 103052
Tssr103053 11 75759290 to 75759336 46 + TSS region transcription start site region 103053
Tssr103054 11 75759339 to 75759397 58 + TSS region transcription start site region 103054
Tssr103055 11 75764628 to 75764639 11 + TSS region transcription start site region 103055
Tssr109225 11 75764667 to 75764727 60 - TSS region transcription start site region 109225
Tssr103056 11 75764676 to 75764752 76 + TSS region transcription start site region 103056
Tssr103057 11 75764763 to 75764800 37 + TSS region transcription start site region 103057
Tssr103058 11 75764832 to 75764847 15 + TSS region transcription start site region 103058
Tssr103059 11 75764966 to 75764984 18 + TSS region transcription start site region 103059
Tssr103060 11 75765092 to 75765104 12 + TSS region transcription start site region 103060
Tssr103061 11 75765190 to 75765201 11 + TSS region transcription start site region 103061
Tssr103062 11 75765288 to 75765299 11 + TSS region transcription start site region 103062
Tssr103063 11 75765338 to 75765349 11 + TSS region transcription start site region 103063
Tssr103064 11 75765362 to 75765373 11 + TSS region transcription start site region 103064
Tssr103065 11 75765376 to 75765386 10 + TSS region transcription start site region 103065
Tssr103066 11 75765389 to 75765415 26 + TSS region transcription start site region 103066
Tssr3579 11 75765484 to 75765499 15 + TSS region transcription start site region 3579
Doc2b 11 75768966 to 75796049 27083 - protein coding gene double C2, beta
Cpgi3276 11 75769178 to 75769349 171 CpG island CpG island 3276
D11Jcs8 11 75784856 to 75785034 178 DNA segment DNA segment, Chr 11, John C. Schimenti 8
Cpgi3277 11 75794623 to 75797007 2384 CpG island CpG island 3277
Gm12339 11 75794768 to 75825241 30473 + lncRNA gene predicted gene 12339
Tssr109226 11 75796032 to 75796037 5 - TSS region transcription start site region 109226
Tssr109227 11 75796048 to 75796081 33 - TSS region transcription start site region 109227
Rph3al 11 75830999 to 75938429 107430 - protein coding gene rabphilin 3A-like (without C2 domains)
Tssr109228 11 75847696 to 75847702 6 - TSS region transcription start site region 109228
Gm16075 11 75860969 to 75861494 525 + antisense lncRNA gene predicted gene 16075
Tssr109229 11 75906673 to 75906684 11 - TSS region transcription start site region 109229
Tssr109230 11 75906688 to 75906714 26 - TSS region transcription start site region 109230
Tssr109231 11 75925901 to 75925946 45 - TSS region transcription start site region 109231
Tssr109232 11 75926491 to 75926499 8 - TSS region transcription start site region 109232
Tssr109233 11 75937677 to 75937722 45 - TSS region transcription start site region 109233
Tssr109234 11 75937726 to 75937752 26 - TSS region transcription start site region 109234
Tssr103067 11 75960994 to 75961019 25 + TSS region transcription start site region 103067
Cpgi3278 11 75965965 to 75967354 1389 CpG island CpG island 3278
Cpgi3279 11 75999645 to 76000301 656 CpG island CpG island 3279
1700016K19Rik 11 75999912 to 76003569 3657 + protein coding gene RIKEN cDNA 1700016K19 gene
Tssr103068 11 75999928 to 75999946 18 + TSS region transcription start site region 103068
Tssr103069 11 75999952 to 75999977 25 + TSS region transcription start site region 103069
Tssr103070 11 75999980 to 75999994 14 + TSS region transcription start site region 103070
Tssr103071 11 76000006 to 76000011 5 + TSS region transcription start site region 103071
Tssr103072 11 76000016 to 76000023 7 + TSS region transcription start site region 103072
D11Bhm23 11 76010823 to 76010946 123 DNA segment DNA segment, Chr 11, Boehm 23
Tssr103073 11 76012134 to 76012135 1 + TSS region transcription start site region 103073
Tssr109235 11 76015428 to 76015445 17 - TSS region transcription start site region 109235
Tssr109236 11 76015454 to 76015467 13 - TSS region transcription start site region 109236
Rflnb 11 76019194 to 76027782 8588 - protein coding gene refilin B
D11Jcs9 11 76021500 to 76021715 215 DNA segment DNA segment, Chr 11, John C. Schimenti 9
Cpgi3280 11 76026938 to 76028393 1455 CpG island CpG island 3280
Tssr109237 11 76027726 to 76027802 76 - TSS region transcription start site region 109237
Vps53 11 76046226 to 76179630 133404 - protein coding gene VPS53 GARP complex subunit