Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75336793-75636808

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpa1 11 75300259 to 75348383 48124 - protein coding gene replication protein A1
Tssr109167 11 75336789 to 75336810 21 - TSS region transcription start site region 109167
Tssr109168 11 75341063 to 75341108 45 - TSS region transcription start site region 109168
Tssr109169 11 75344320 to 75344324 4 - TSS region transcription start site region 109169
Cpgi3260 11 75348015 to 75348816 801 CpG island CpG island 3260
Tssr109170 11 75348261 to 75348323 62 - TSS region transcription start site region 109170
Tssr109171 11 75348335 to 75348342 7 - TSS region transcription start site region 109171
Smyd4 11 75348433 to 75405705 57272 + protein coding gene SET and MYND domain containing 4
Tssr102937 11 75348493 to 75348560 67 + TSS region transcription start site region 102937
Serpinf1 11 75410029 to 75422623 12594 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 1
Tssr109172 11 75414965 to 75414978 13 - TSS region transcription start site region 109172
Tssr109173 11 75415045 to 75415056 11 - TSS region transcription start site region 109173
Tssr109174 11 75415060 to 75415077 17 - TSS region transcription start site region 109174
Tssr109175 11 75415106 to 75415118 12 - TSS region transcription start site region 109175
Tssr109176 11 75415127 to 75415141 14 - TSS region transcription start site region 109176
Tssr109177 11 75415144 to 75415151 7 - TSS region transcription start site region 109177
Tssr109178 11 75415625 to 75415648 23 - TSS region transcription start site region 109178
Tssr102938 11 75415639 to 75415657 18 + TSS region transcription start site region 102938
Tssr109179 11 75415685 to 75415701 16 - TSS region transcription start site region 109179
Tssr109180 11 75415719 to 75415733 14 - TSS region transcription start site region 109180
Tssr109181 11 75416254 to 75416260 6 - TSS region transcription start site region 109181
Tssr109182 11 75416279 to 75416290 11 - TSS region transcription start site region 109182
Tssr109183 11 75416335 to 75416353 18 - TSS region transcription start site region 109183
Tssr109184 11 75416377 to 75416392 15 - TSS region transcription start site region 109184
Tssr109185 11 75422524 to 75422561 37 - TSS region transcription start site region 109185
Tssr109186 11 75422587 to 75422609 22 - TSS region transcription start site region 109186
Gm35337 11 75422663 to 75426377 3714 + lncRNA gene predicted gene, 35337
Gm12336 11 75422731 to 75423340 609 - lincRNA gene predicted gene 12336
Gm12337 11 75427753 to 75428152 399 + pseudogene predicted gene 12337
Tssr109187 11 75431313 to 75431324 11 - TSS region transcription start site region 109187
Tssr109188 11 75431353 to 75431374 21 - TSS region transcription start site region 109188
Serpinf2 11 75431736 to 75439501 7765 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 2
Tssr109189 11 75432528 to 75432538 10 - TSS region transcription start site region 109189
Tssr109190 11 75436801 to 75436817 16 - TSS region transcription start site region 109190
Tssr109191 11 75437421 to 75437431 10 - TSS region transcription start site region 109191
Tssr109192 11 75437446 to 75437471 25 - TSS region transcription start site region 109192
Gm35391 11 75438079 to 75439390 1311 + lncRNA gene predicted gene, 35391
Tssr109193 11 75438242 to 75438281 39 - TSS region transcription start site region 109193
Tssr3575 11 75438368 to 75438372 4 + TSS region transcription start site region 3575
Tssr109194 11 75438435 to 75438438 3 - TSS region transcription start site region 109194
Tssr109195 11 75438923 to 75438946 23 - TSS region transcription start site region 109195
Tssr109196 11 75439475 to 75439486 11 - TSS region transcription start site region 109196
Tssr109197 11 75439489 to 75439531 42 - TSS region transcription start site region 109197
Tssr109198 11 75439551 to 75439558 7 - TSS region transcription start site region 109198
Tssr109199 11 75439573 to 75439581 8 - TSS region transcription start site region 109199
Tssr109200 11 75439587 to 75439592 5 - TSS region transcription start site region 109200
Wdr81 11 75440944 to 75454717 13773 - protein coding gene WD repeat domain 81
Cpgi3261 11 75441775 to 75441980 205 CpG island CpG island 3261
Tssr109201 11 75449884 to 75449898 14 - TSS region transcription start site region 109201
Tssr109202 11 75449899 to 75449910 11 - TSS region transcription start site region 109202
Tssr109203 11 75451109 to 75451127 18 - TSS region transcription start site region 109203
Tssr102939 11 75452720 to 75452724 4 + TSS region transcription start site region 102939
Cpgi3262 11 75454035 to 75454898 863 CpG island CpG island 3262
Tssr109204 11 75454638 to 75454654 16 - TSS region transcription start site region 109204
Tssr109205 11 75454656 to 75454721 65 - TSS region transcription start site region 109205
Tssr102940 11 75459437 to 75459462 25 + TSS region transcription start site region 102940
Tssr109206 11 75460474 to 75460485 11 - TSS region transcription start site region 109206
Tssr102941 11 75460693 to 75460704 11 + TSS region transcription start site region 102941
Tssr109207 11 75461127 to 75461182 55 - TSS region transcription start site region 109207
Cpgi3263 11 75461363 to 75462311 948 CpG island CpG island 3263
Mir22hg 11 75461539 to 75466676 5137 + lncRNA gene Mir22 host gene (non-protein coding)
Tssr102942 11 75461598 to 75461609 11 + TSS region transcription start site region 102942
Tssr102943 11 75461624 to 75461641 17 + TSS region transcription start site region 102943
Tssr102944 11 75461662 to 75461665 3 + TSS region transcription start site region 102944
Tssr102945 11 75461666 to 75461686 20 + TSS region transcription start site region 102945
Tssr102946 11 75463671 to 75463683 12 + TSS region transcription start site region 102946
Mir22 11 75463716 to 75463810 94 + miRNA gene microRNA 22
Tssr102947 11 75463793 to 75463797 4 + TSS region transcription start site region 102947
Tssr102948 11 75463926 to 75463943 17 + TSS region transcription start site region 102948
Tssr102949 11 75463985 to 75464010 25 + TSS region transcription start site region 102949
Tssr102950 11 75464046 to 75464116 70 + TSS region transcription start site region 102950
Cpgi3264 11 75467927 to 75468397 470 CpG island CpG island 3264
Tlcd2 11 75468024 to 75470899 2875 + protein coding gene TLC domain containing 2
Tssr102951 11 75468040 to 75468096 56 + TSS region transcription start site region 102951
Tssr102952 11 75468129 to 75468136 7 + TSS region transcription start site region 102952
Tssr102953 11 75468161 to 75468184 23 + TSS region transcription start site region 102953
Tssr102954 11 75468195 to 75468204 9 + TSS region transcription start site region 102954
Tssr109208 11 75470774 to 75470777 3 - TSS region transcription start site region 109208
Cpgi3265 11 75486562 to 75487332 770 CpG island CpG island 3265
Tssr102955 11 75486793 to 75486808 15 + TSS region transcription start site region 102955
Tssr102956 11 75486813 to 75486866 53 + TSS region transcription start site region 102956
Prpf8 11 75486816 to 75509449 22633 + protein coding gene pre-mRNA processing factor 8
Tssr102957 11 75487133 to 75487150 17 + TSS region transcription start site region 102957
Tssr102958 11 75489393 to 75489397 4 + TSS region transcription start site region 102958
Tssr102959 11 75490454 to 75490475 21 + TSS region transcription start site region 102959
Tssr102960 11 75509950 to 75509997 47 + TSS region transcription start site region 102960
Tssr102961 11 75510077 to 75510104 27 + TSS region transcription start site region 102961
Cpgi3266 11 75510084 to 75510951 867 CpG island CpG island 3266
Rilp 11 75510094 to 75513168 3074 + protein coding gene Rab interacting lysosomal protein
Tssr102962 11 75510106 to 75510128 22 + TSS region transcription start site region 102962
Tssr102963 11 75513530 to 75513541 11 + TSS region transcription start site region 102963
Scarf1 11 75513540 to 75526582 13042 + protein coding gene scavenger receptor class F, member 1
Tssr102964 11 75513548 to 75513582 34 + TSS region transcription start site region 102964
Cpgi3267 11 75515194 to 75515744 550 CpG island CpG island 3267
Tssr102965 11 75516371 to 75516378 7 + TSS region transcription start site region 102965
Gm45606 11 75530277 to 75533071 2794 - antisense lncRNA gene predicted gene 45606
Cpgi3268 11 75530627 to 75532878 2251 CpG island CpG island 3268
Tssr102966 11 75531690 to 75531732 42 + TSS region transcription start site region 102966
Slc43a2 11 75531694 to 75577575 45881 + protein coding gene solute carrier family 43, member 2
Tssr109209 11 75531898 to 75531909 11 - TSS region transcription start site region 109209
Tssr102967 11 75532006 to 75532026 20 + TSS region transcription start site region 102967
Tssr102968 11 75532099 to 75532125 26 + TSS region transcription start site region 102968
Tssr102969 11 75532127 to 75532151 24 + TSS region transcription start site region 102969
Tssr102970 11 75532164 to 75532187 23 + TSS region transcription start site region 102970
Tssr102971 11 75532196 to 75532220 24 + TSS region transcription start site region 102971
Tssr102972 11 75532232 to 75532248 16 + TSS region transcription start site region 102972
Tssr102973 11 75532268 to 75532280 12 + TSS region transcription start site region 102973
Tssr109210 11 75533024 to 75533035 11 - TSS region transcription start site region 109210
Tssr109211 11 75533063 to 75533082 19 - TSS region transcription start site region 109211
Tssr109212 11 75533091 to 75533108 17 - TSS region transcription start site region 109212
Tssr102974 11 75533403 to 75533414 11 + TSS region transcription start site region 102974
Tssr102975 11 75533455 to 75533530 75 + TSS region transcription start site region 102975
Tssr102976 11 75550132 to 75550155 23 + TSS region transcription start site region 102976
Mir3971 11 75551429 to 75551511 82 + miRNA gene microRNA 3971
Tssr3576 11 75561085 to 75561110 25 - TSS region transcription start site region 3576
D11Jcs7 11 75563645 to 75563894 249 DNA segment DNA segment, Chr 11, John C. Schimenti 7
Tssr102977 11 75563653 to 75563666 13 + TSS region transcription start site region 102977
Tssr102978 11 75566859 to 75566875 16 + TSS region transcription start site region 102978
Tssr102979 11 75567979 to 75567993 14 + TSS region transcription start site region 102979
Tssr102980 11 75572459 to 75572485 26 + TSS region transcription start site region 102980
Tssr102981 11 75572512 to 75572545 33 + TSS region transcription start site region 102981
Tssr102982 11 75572719 to 75572735 16 + TSS region transcription start site region 102982
Tssr102983 11 75572746 to 75572791 45 + TSS region transcription start site region 102983
Tssr102984 11 75572812 to 75572824 12 + TSS region transcription start site region 102984
Tssr109213 11 75573228 to 75573244 16 - TSS region transcription start site region 109213
Tssr102985 11 75576772 to 75576786 14 + TSS region transcription start site region 102985
Tssr102986 11 75576890 to 75576909 19 + TSS region transcription start site region 102986
Tssr102987 11 75576937 to 75576950 13 + TSS region transcription start site region 102987
Tssr102988 11 75577016 to 75577045 29 + TSS region transcription start site region 102988
Tssr102989 11 75577090 to 75577124 34 + TSS region transcription start site region 102989
Tssr102990 11 75577127 to 75577138 11 + TSS region transcription start site region 102990
Cpgi3269 11 75587828 to 75588845 1017 CpG island CpG island 3269
Tssr102991 11 75588064 to 75588151 87 + TSS region transcription start site region 102991
Pitpna 11 75588097 to 75628804 40707 + protein coding gene phosphatidylinositol transfer protein, alpha
Tssr102992 11 75588153 to 75588177 24 + TSS region transcription start site region 102992
4931413K12Rik 11 75590024 to 75594766 4742 - lncRNA gene RIKEN cDNA 4931413K12 gene
Tssr109214 11 75594736 to 75594741 5 - TSS region transcription start site region 109214
Tssr109215 11 75594743 to 75594760 17 - TSS region transcription start site region 109215
Tssr109216 11 75594763 to 75594764 1 - TSS region transcription start site region 109216
Tssr109217 11 75594765 to 75594783 18 - TSS region transcription start site region 109217
Tssr109218 11 75594793 to 75594804 11 - TSS region transcription start site region 109218
Tssr102993 11 75594910 to 75594921 11 + TSS region transcription start site region 102993
Tssr102994 11 75596124 to 75596146 22 + TSS region transcription start site region 102994
Tssr102995 11 75596150 to 75596162 12 + TSS region transcription start site region 102995
Tssr102996 11 75598233 to 75598265 32 + TSS region transcription start site region 102996
Tssr102997 11 75598274 to 75598302 28 + TSS region transcription start site region 102997
Tssr102998 11 75598895 to 75598907 12 + TSS region transcription start site region 102998
Gm12338 11 75599763 to 75599954 191 - pseudogene predicted gene 12338
Tssr109219 11 75600046 to 75600051 5 - TSS region transcription start site region 109219
Tssr102999 11 75601479 to 75601500 21 + TSS region transcription start site region 102999
Tssr103000 11 75607882 to 75607895 13 + TSS region transcription start site region 103000
Tssr103001 11 75612704 to 75612714 10 + TSS region transcription start site region 103001
Tssr103002 11 75615044 to 75615047 3 + TSS region transcription start site region 103002
Tssr103003 11 75619521 to 75619538 17 + TSS region transcription start site region 103003
Tssr103004 11 75620660 to 75620682 22 + TSS region transcription start site region 103004
Tssr103005 11 75620694 to 75620712 18 + TSS region transcription start site region 103005
Tssr103006 11 75626291 to 75626329 38 + TSS region transcription start site region 103006
Tssr109220 11 75626717 to 75626733 16 - TSS region transcription start site region 109220
Cpgi3270 11 75630554 to 75631378 824 CpG island CpG island 3270
Tssr109221 11 75630722 to 75630763 41 - TSS region transcription start site region 109221
Tssr103007 11 75630759 to 75630770 11 + TSS region transcription start site region 103007
Tssr103008 11 75630774 to 75630803 29 + TSS region transcription start site region 103008
Tssr109222 11 75630798 to 75630807 9 - TSS region transcription start site region 109222
Tssr3577 11 75630805 to 75630811 6 + TSS region transcription start site region 3577
Tssr103009 11 75630815 to 75630830 15 + TSS region transcription start site region 103009
Tssr103010 11 75630832 to 75630851 19 + TSS region transcription start site region 103010
Tssr103011 11 75630948 to 75630959 11 + TSS region transcription start site region 103011
Tssr103012 11 75630974 to 75631076 102 + TSS region transcription start site region 103012
Inpp5k 11 75630988 to 75648871 17883 + protein coding gene inositol polyphosphate 5-phosphatase K
Tssr103013 11 75631086 to 75631100 14 + TSS region transcription start site region 103013
Tssr103014 11 75636759 to 75636814 55 + TSS region transcription start site region 103014