Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75258859-80528870

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1562 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hlb290 11 36391750 to 76087800 39696050 heritable phenotypic marker heart, lung and blood, 290
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
Nidd1n 11 45275046 to 80087498 34812452 QTL non-insulin-dependent diabetes mellitus 1 in NSY
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
Rtn4rl1 11 75193993 to 75267769 73776 + protein coding gene reticulon 4 receptor-like 1
Gm35117 11 75254064 to 75274183 20119 - lncRNA gene predicted gene, 35117
Tssr102936 11 75272079 to 75272080 1 + TSS region transcription start site region 102936
Cpgi3259 11 75281531 to 75281755 224 CpG island CpG island 3259
Tssr109165 11 75297869 to 75297880 11 - TSS region transcription start site region 109165
Rpa1 11 75300259 to 75348383 48124 - protein coding gene replication protein A1
Gm47300 11 75318488 to 75318608 120 - miRNA gene predicted gene, 47300
Tssr109166 11 75318893 to 75318918 25 - TSS region transcription start site region 109166
D11Bhm21 11 75322393 to 75322502 109 DNA segment DNA segment, Chr 11, Boehm 21
Tssr109167 11 75336789 to 75336810 21 - TSS region transcription start site region 109167
Tssr109168 11 75341063 to 75341108 45 - TSS region transcription start site region 109168
Tssr109169 11 75344320 to 75344324 4 - TSS region transcription start site region 109169
Cpgi3260 11 75348015 to 75348816 801 CpG island CpG island 3260
Tssr109170 11 75348261 to 75348323 62 - TSS region transcription start site region 109170
Tssr109171 11 75348335 to 75348342 7 - TSS region transcription start site region 109171
Smyd4 11 75348433 to 75405705 57272 + protein coding gene SET and MYND domain containing 4
Tssr102937 11 75348493 to 75348560 67 + TSS region transcription start site region 102937
Serpinf1 11 75410029 to 75422623 12594 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 1
Tssr109172 11 75414965 to 75414978 13 - TSS region transcription start site region 109172
Tssr109173 11 75415045 to 75415056 11 - TSS region transcription start site region 109173
Tssr109174 11 75415060 to 75415077 17 - TSS region transcription start site region 109174
Tssr109175 11 75415106 to 75415118 12 - TSS region transcription start site region 109175
Tssr109176 11 75415127 to 75415141 14 - TSS region transcription start site region 109176
Tssr109177 11 75415144 to 75415151 7 - TSS region transcription start site region 109177
Tssr109178 11 75415625 to 75415648 23 - TSS region transcription start site region 109178
Tssr102938 11 75415639 to 75415657 18 + TSS region transcription start site region 102938
Tssr109179 11 75415685 to 75415701 16 - TSS region transcription start site region 109179
Tssr109180 11 75415719 to 75415733 14 - TSS region transcription start site region 109180
Tssr109181 11 75416254 to 75416260 6 - TSS region transcription start site region 109181
Tssr109182 11 75416279 to 75416290 11 - TSS region transcription start site region 109182
Tssr109183 11 75416335 to 75416353 18 - TSS region transcription start site region 109183
Tssr109184 11 75416377 to 75416392 15 - TSS region transcription start site region 109184
Tssr109185 11 75422524 to 75422561 37 - TSS region transcription start site region 109185
Tssr109186 11 75422587 to 75422609 22 - TSS region transcription start site region 109186
Gm35337 11 75422663 to 75426377 3714 + lncRNA gene predicted gene, 35337
Gm12336 11 75422731 to 75423340 609 - lincRNA gene predicted gene 12336
Gm12337 11 75427753 to 75428152 399 + pseudogene predicted gene 12337
Tssr109187 11 75431313 to 75431324 11 - TSS region transcription start site region 109187
Tssr109188 11 75431353 to 75431374 21 - TSS region transcription start site region 109188
Serpinf2 11 75431736 to 75439501 7765 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 2
Tssr109189 11 75432528 to 75432538 10 - TSS region transcription start site region 109189
Tssr109190 11 75436801 to 75436817 16 - TSS region transcription start site region 109190
Tssr109191 11 75437421 to 75437431 10 - TSS region transcription start site region 109191
Tssr109192 11 75437446 to 75437471 25 - TSS region transcription start site region 109192
Gm35391 11 75438079 to 75439390 1311 + lncRNA gene predicted gene, 35391
Tssr109193 11 75438242 to 75438281 39 - TSS region transcription start site region 109193
Tssr3575 11 75438368 to 75438372 4 + TSS region transcription start site region 3575
Tssr109194 11 75438435 to 75438438 3 - TSS region transcription start site region 109194
Tssr109195 11 75438923 to 75438946 23 - TSS region transcription start site region 109195
Tssr109196 11 75439475 to 75439486 11 - TSS region transcription start site region 109196
Tssr109197 11 75439489 to 75439531 42 - TSS region transcription start site region 109197
Tssr109198 11 75439551 to 75439558 7 - TSS region transcription start site region 109198
Tssr109199 11 75439573 to 75439581 8 - TSS region transcription start site region 109199
Tssr109200 11 75439587 to 75439592 5 - TSS region transcription start site region 109200
Wdr81 11 75440944 to 75454717 13773 - protein coding gene WD repeat domain 81
Cpgi3261 11 75441775 to 75441980 205 CpG island CpG island 3261
Tssr109201 11 75449884 to 75449898 14 - TSS region transcription start site region 109201
Tssr109202 11 75449899 to 75449910 11 - TSS region transcription start site region 109202
Tssr109203 11 75451109 to 75451127 18 - TSS region transcription start site region 109203
Tssr102939 11 75452720 to 75452724 4 + TSS region transcription start site region 102939
Cpgi3262 11 75454035 to 75454898 863 CpG island CpG island 3262
Tssr109204 11 75454638 to 75454654 16 - TSS region transcription start site region 109204
Tssr109205 11 75454656 to 75454721 65 - TSS region transcription start site region 109205
Tssr102940 11 75459437 to 75459462 25 + TSS region transcription start site region 102940
Tssr109206 11 75460474 to 75460485 11 - TSS region transcription start site region 109206
Tssr102941 11 75460693 to 75460704 11 + TSS region transcription start site region 102941
Tssr109207 11 75461127 to 75461182 55 - TSS region transcription start site region 109207
Cpgi3263 11 75461363 to 75462311 948 CpG island CpG island 3263
Mir22hg 11 75461539 to 75466676 5137 + lncRNA gene Mir22 host gene (non-protein coding)
Tssr102942 11 75461598 to 75461609 11 + TSS region transcription start site region 102942
Tssr102943 11 75461624 to 75461641 17 + TSS region transcription start site region 102943
Tssr102944 11 75461662 to 75461665 3 + TSS region transcription start site region 102944
Tssr102945 11 75461666 to 75461686 20 + TSS region transcription start site region 102945
Tssr102946 11 75463671 to 75463683 12 + TSS region transcription start site region 102946
Mir22 11 75463716 to 75463810 94 + miRNA gene microRNA 22
Tssr102947 11 75463793 to 75463797 4 + TSS region transcription start site region 102947
Tssr102948 11 75463926 to 75463943 17 + TSS region transcription start site region 102948
Tssr102949 11 75463985 to 75464010 25 + TSS region transcription start site region 102949
Tssr102950 11 75464046 to 75464116 70 + TSS region transcription start site region 102950
Cpgi3264 11 75467927 to 75468397 470 CpG island CpG island 3264
Tlcd2 11 75468024 to 75470899 2875 + protein coding gene TLC domain containing 2
Tssr102951 11 75468040 to 75468096 56 + TSS region transcription start site region 102951
Tssr102952 11 75468129 to 75468136 7 + TSS region transcription start site region 102952
Tssr102953 11 75468161 to 75468184 23 + TSS region transcription start site region 102953
Tssr102954 11 75468195 to 75468204 9 + TSS region transcription start site region 102954
Tssr109208 11 75470774 to 75470777 3 - TSS region transcription start site region 109208
Cpgi3265 11 75486562 to 75487332 770 CpG island CpG island 3265
Tssr102955 11 75486793 to 75486808 15 + TSS region transcription start site region 102955
Tssr102956 11 75486813 to 75486866 53 + TSS region transcription start site region 102956
Prpf8 11 75486816 to 75509449 22633 + protein coding gene pre-mRNA processing factor 8
Tssr102957 11 75487133 to 75487150 17 + TSS region transcription start site region 102957
Tssr102958 11 75489393 to 75489397 4 + TSS region transcription start site region 102958
Tssr102959 11 75490454 to 75490475 21 + TSS region transcription start site region 102959
Tssr102960 11 75509950 to 75509997 47 + TSS region transcription start site region 102960
Tssr102961 11 75510077 to 75510104 27 + TSS region transcription start site region 102961
Cpgi3266 11 75510084 to 75510951 867 CpG island CpG island 3266
Rilp 11 75510094 to 75513168 3074 + protein coding gene Rab interacting lysosomal protein
Tssr102962 11 75510106 to 75510128 22 + TSS region transcription start site region 102962
Tssr102963 11 75513530 to 75513541 11 + TSS region transcription start site region 102963
Scarf1 11 75513540 to 75526582 13042 + protein coding gene scavenger receptor class F, member 1
Tssr102964 11 75513548 to 75513582 34 + TSS region transcription start site region 102964
Cpgi3267 11 75515194 to 75515744 550 CpG island CpG island 3267
Tssr102965 11 75516371 to 75516378 7 + TSS region transcription start site region 102965
Gm45606 11 75530277 to 75533071 2794 - antisense lncRNA gene predicted gene 45606
Cpgi3268 11 75530627 to 75532878 2251 CpG island CpG island 3268
Tssr102966 11 75531690 to 75531732 42 + TSS region transcription start site region 102966
Slc43a2 11 75531694 to 75577575 45881 + protein coding gene solute carrier family 43, member 2
Tssr109209 11 75531898 to 75531909 11 - TSS region transcription start site region 109209
Tssr102967 11 75532006 to 75532026 20 + TSS region transcription start site region 102967
Tssr102968 11 75532099 to 75532125 26 + TSS region transcription start site region 102968
Tssr102969 11 75532127 to 75532151 24 + TSS region transcription start site region 102969
Tssr102970 11 75532164 to 75532187 23 + TSS region transcription start site region 102970
Tssr102971 11 75532196 to 75532220 24 + TSS region transcription start site region 102971
Tssr102972 11 75532232 to 75532248 16 + TSS region transcription start site region 102972
Tssr102973 11 75532268 to 75532280 12 + TSS region transcription start site region 102973
Tssr109210 11 75533024 to 75533035 11 - TSS region transcription start site region 109210
Tssr109211 11 75533063 to 75533082 19 - TSS region transcription start site region 109211
Tssr109212 11 75533091 to 75533108 17 - TSS region transcription start site region 109212
Tssr102974 11 75533403 to 75533414 11 + TSS region transcription start site region 102974
Tssr102975 11 75533455 to 75533530 75 + TSS region transcription start site region 102975
Tssr102976 11 75550132 to 75550155 23 + TSS region transcription start site region 102976
Mir3971 11 75551429 to 75551511 82 + miRNA gene microRNA 3971
Tssr3576 11 75561085 to 75561110 25 - TSS region transcription start site region 3576
D11Jcs7 11 75563645 to 75563894 249 DNA segment DNA segment, Chr 11, John C. Schimenti 7
Tssr102977 11 75563653 to 75563666 13 + TSS region transcription start site region 102977
Tssr102978 11 75566859 to 75566875 16 + TSS region transcription start site region 102978
Tssr102979 11 75567979 to 75567993 14 + TSS region transcription start site region 102979
Tssr102980 11 75572459 to 75572485 26 + TSS region transcription start site region 102980
Tssr102981 11 75572512 to 75572545 33 + TSS region transcription start site region 102981
Tssr102982 11 75572719 to 75572735 16 + TSS region transcription start site region 102982
Tssr102983 11 75572746 to 75572791 45 + TSS region transcription start site region 102983
Tssr102984 11 75572812 to 75572824 12 + TSS region transcription start site region 102984
Tssr109213 11 75573228 to 75573244 16 - TSS region transcription start site region 109213
Tssr102985 11 75576772 to 75576786 14 + TSS region transcription start site region 102985
Tssr102986 11 75576890 to 75576909 19 + TSS region transcription start site region 102986
Tssr102987 11 75576937 to 75576950 13 + TSS region transcription start site region 102987
Tssr102988 11 75577016 to 75577045 29 + TSS region transcription start site region 102988
Tssr102989 11 75577090 to 75577124 34 + TSS region transcription start site region 102989
Tssr102990 11 75577127 to 75577138 11 + TSS region transcription start site region 102990
Cpgi3269 11 75587828 to 75588845 1017 CpG island CpG island 3269
Tssr102991 11 75588064 to 75588151 87 + TSS region transcription start site region 102991
Pitpna 11 75588097 to 75628804 40707 + protein coding gene phosphatidylinositol transfer protein, alpha
Tssr102992 11 75588153 to 75588177 24 + TSS region transcription start site region 102992
4931413K12Rik 11 75590024 to 75594766 4742 - lncRNA gene RIKEN cDNA 4931413K12 gene
Tssr109214 11 75594736 to 75594741 5 - TSS region transcription start site region 109214
Tssr109215 11 75594743 to 75594760 17 - TSS region transcription start site region 109215
Tssr109216 11 75594763 to 75594764 1 - TSS region transcription start site region 109216
Tssr109217 11 75594765 to 75594783 18 - TSS region transcription start site region 109217
Tssr109218 11 75594793 to 75594804 11 - TSS region transcription start site region 109218
Tssr102993 11 75594910 to 75594921 11 + TSS region transcription start site region 102993
Tssr102994 11 75596124 to 75596146 22 + TSS region transcription start site region 102994
Tssr102995 11 75596150 to 75596162 12 + TSS region transcription start site region 102995
Tssr102996 11 75598233 to 75598265 32 + TSS region transcription start site region 102996
Tssr102997 11 75598274 to 75598302 28 + TSS region transcription start site region 102997
Tssr102998 11 75598895 to 75598907 12 + TSS region transcription start site region 102998
Gm12338 11 75599763 to 75599954 191 - pseudogene predicted gene 12338
Tssr109219 11 75600046 to 75600051 5 - TSS region transcription start site region 109219
Tssr102999 11 75601479 to 75601500 21 + TSS region transcription start site region 102999
Tssr103000 11 75607882 to 75607895 13 + TSS region transcription start site region 103000
Tssr103001 11 75612704 to 75612714 10 + TSS region transcription start site region 103001
Tssr103002 11 75615044 to 75615047 3 + TSS region transcription start site region 103002
Tssr103003 11 75619521 to 75619538 17 + TSS region transcription start site region 103003
Tssr103004 11 75620660 to 75620682 22 + TSS region transcription start site region 103004
Tssr103005 11 75620694 to 75620712 18 + TSS region transcription start site region 103005
Tssr103006 11 75626291 to 75626329 38 + TSS region transcription start site region 103006
Tssr109220 11 75626717 to 75626733 16 - TSS region transcription start site region 109220
Cpgi3270 11 75630554 to 75631378 824 CpG island CpG island 3270
Tssr109221 11 75630722 to 75630763 41 - TSS region transcription start site region 109221
Tssr103007 11 75630759 to 75630770 11 + TSS region transcription start site region 103007
Tssr103008 11 75630774 to 75630803 29 + TSS region transcription start site region 103008
Tssr109222 11 75630798 to 75630807 9 - TSS region transcription start site region 109222
Tssr3577 11 75630805 to 75630811 6 + TSS region transcription start site region 3577
Tssr103009 11 75630815 to 75630830 15 + TSS region transcription start site region 103009
Tssr103010 11 75630832 to 75630851 19 + TSS region transcription start site region 103010
Tssr103011 11 75630948 to 75630959 11 + TSS region transcription start site region 103011
Tssr103012 11 75630974 to 75631076 102 + TSS region transcription start site region 103012
Inpp5k 11 75630988 to 75648871 17883 + protein coding gene inositol polyphosphate 5-phosphatase K
Tssr103013 11 75631086 to 75631100 14 + TSS region transcription start site region 103013
Tssr103014 11 75636759 to 75636814 55 + TSS region transcription start site region 103014
Tssr103015 11 75636817 to 75636848 31 + TSS region transcription start site region 103015
Tssr103016 11 75642557 to 75642590 33 + TSS region transcription start site region 103016
Tssr3578 11 75650488 to 75650493 5 + TSS region transcription start site region 3578
Tssr103017 11 75650501 to 75650544 43 + TSS region transcription start site region 103017
Myo1c 11 75650504 to 75673910 23406 + protein coding gene myosin IC
Tssr103018 11 75650553 to 75650570 17 + TSS region transcription start site region 103018
Tssr103019 11 75650612 to 75650624 12 + TSS region transcription start site region 103019
Tssr103020 11 75651199 to 75651210 11 + TSS region transcription start site region 103020
Tssr103021 11 75651221 to 75651246 25 + TSS region transcription start site region 103021
Cpgi3271 11 75651265 to 75652263 998 CpG island CpG island 3271
Tssr103022 11 75651504 to 75651537 33 + TSS region transcription start site region 103022
Tssr103023 11 75651541 to 75651613 72 + TSS region transcription start site region 103023
Tssr103024 11 75651619 to 75651637 18 + TSS region transcription start site region 103024
Tssr103025 11 75652201 to 75652242 41 + TSS region transcription start site region 103025
Cpgi3272 11 75653737 to 75654716 979 CpG island CpG island 3272
Cpgi3273 11 75655473 to 75656587 1114 CpG island CpG island 3273