Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75043993-75417769

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smg6 11 74925872 to 75164448 238576 + protein coding gene Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
D11Bhm16 11 75060148 to 75060241 93 DNA segment DNA segment, Chr 11, Boehm 16
Tssr102927 11 75063115 to 75063116 1 + TSS region transcription start site region 102927
Gm12335 11 75066436 to 75066762 326 - pseudogene predicted gene 12335
Rps12-ps19 11 75070863 to 75071228 365 - pseudogene ribosomal protein S12, pseudogene 19
Tssr109158 11 75071297 to 75071300 3 - TSS region transcription start site region 109158
D11Jcs6 11 75087017 to 75087187 170 DNA segment DNA segment, Chr 11, John C. Schimenti 6
D11Bhm17 11 75104031 to 75104131 100 DNA segment DNA segment, Chr 11, Boehm 17
D11Bhm18 11 75104223 to 75104309 86 DNA segment DNA segment, Chr 11, Boehm 18
D11Bhm19 11 75128926 to 75129007 81 DNA segment DNA segment, Chr 11, Boehm 19
Hic1 11 75164565 to 75169519 4954 - protein coding gene hypermethylated in cancer 1
Cpgi3251 11 75165061 to 75169413 4352 CpG island CpG island 3251
Tssr109159 11 75168152 to 75168156 4 - TSS region transcription start site region 109159
Tssr109160 11 75169137 to 75169151 14 - TSS region transcription start site region 109160
Tssr109161 11 75169167 to 75169176 9 - TSS region transcription start site region 109161
Cpgi3252 11 75170119 to 75170923 804 CpG island CpG island 3252
Cpgi3253 11 75171333 to 75171502 169 CpG island CpG island 3253
Cpgi3254 11 75172076 to 75174051 1975 CpG island CpG island 3254
Tssr102928 11 75172444 to 75172455 11 + TSS region transcription start site region 102928
Tssr102929 11 75172471 to 75172478 7 + TSS region transcription start site region 102929
Tssr102930 11 75172553 to 75172569 16 + TSS region transcription start site region 102930
1700016P03Rik 11 75172560 to 75177633 5073 + unclassified non-coding RNA gene RIKEN cDNA 1700016P03 gene
Mir212 11 75173388 to 75173478 90 + miRNA gene microRNA 212
Mirc19 11 75173388 to 75173747 359 complex/cluster/region microRNA cluster 19, including Mir212 through Mir132
Mir132 11 75173682 to 75173747 65 + miRNA gene microRNA 132
Ovca2 11 75175943 to 75178808 2865 - protein coding gene candidate tumor suppressor in ovarian cancer 2
Dph1 11 75177643 to 75190483 12840 - protein coding gene diphthamide biosynthesis 1
Cpgi3255 11 75178452 to 75179229 777 CpG island CpG island 3255
Tssr109162 11 75178792 to 75178830 38 - TSS region transcription start site region 109162
Cpgi3256 11 75190113 to 75190737 624 CpG island CpG island 3256
Tssr109163 11 75190458 to 75190488 30 - TSS region transcription start site region 109163
Cpgi3257 11 75193105 to 75195625 2520 CpG island CpG island 3257
Tssr102931 11 75193797 to 75193864 67 + TSS region transcription start site region 102931
Tssr102932 11 75193868 to 75193877 9 + TSS region transcription start site region 102932
Tssr102933 11 75193991 to 75193998 7 + TSS region transcription start site region 102933
Rtn4rl1 11 75193993 to 75267769 73776 + protein coding gene reticulon 4 receptor-like 1
Tssr109164 11 75195309 to 75195319 10 - TSS region transcription start site region 109164
Tssr102934 11 75206827 to 75206832 5 + TSS region transcription start site region 102934
Cpgi3258 11 75213407 to 75214067 660 CpG island CpG island 3258
Tssr102935 11 75214103 to 75214127 24 + TSS region transcription start site region 102935
Gm35169 11 75243273 to 75246360 3087 - lncRNA gene predicted gene, 35169
Gm35117 11 75254064 to 75274183 20119 - lncRNA gene predicted gene, 35117
Tssr102936 11 75272079 to 75272080 1 + TSS region transcription start site region 102936
Cpgi3259 11 75281531 to 75281755 224 CpG island CpG island 3259
Tssr109165 11 75297869 to 75297880 11 - TSS region transcription start site region 109165
Rpa1 11 75300259 to 75348383 48124 - protein coding gene replication protein A1
Gm47300 11 75318488 to 75318608 120 - miRNA gene predicted gene, 47300
Tssr109166 11 75318893 to 75318918 25 - TSS region transcription start site region 109166
D11Bhm21 11 75322393 to 75322502 109 DNA segment DNA segment, Chr 11, Boehm 21
Tssr109167 11 75336789 to 75336810 21 - TSS region transcription start site region 109167
Tssr109168 11 75341063 to 75341108 45 - TSS region transcription start site region 109168
Tssr109169 11 75344320 to 75344324 4 - TSS region transcription start site region 109169
Cpgi3260 11 75348015 to 75348816 801 CpG island CpG island 3260
Tssr109170 11 75348261 to 75348323 62 - TSS region transcription start site region 109170
Tssr109171 11 75348335 to 75348342 7 - TSS region transcription start site region 109171
Smyd4 11 75348433 to 75405705 57272 + protein coding gene SET and MYND domain containing 4
Tssr102937 11 75348493 to 75348560 67 + TSS region transcription start site region 102937
Serpinf1 11 75410029 to 75422623 12594 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 1
Tssr109172 11 75414965 to 75414978 13 - TSS region transcription start site region 109172
Tssr109173 11 75415045 to 75415056 11 - TSS region transcription start site region 109173
Tssr109174 11 75415060 to 75415077 17 - TSS region transcription start site region 109174
Tssr109175 11 75415106 to 75415118 12 - TSS region transcription start site region 109175
Tssr109176 11 75415127 to 75415141 14 - TSS region transcription start site region 109176
Tssr109177 11 75415144 to 75415151 7 - TSS region transcription start site region 109177
Tssr109178 11 75415625 to 75415648 23 - TSS region transcription start site region 109178
Tssr102938 11 75415639 to 75415657 18 + TSS region transcription start site region 102938
Tssr109179 11 75415685 to 75415701 16 - TSS region transcription start site region 109179
Tssr109180 11 75415719 to 75415733 14 - TSS region transcription start site region 109180
Tssr109181 11 75416254 to 75416260 6 - TSS region transcription start site region 109181
Tssr109182 11 75416279 to 75416290 11 - TSS region transcription start site region 109182
Tssr109183 11 75416335 to 75416353 18 - TSS region transcription start site region 109183
Tssr109184 11 75416377 to 75416392 15 - TSS region transcription start site region 109184