Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:74907605-80017652

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1493 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hlb290 11 36391750 to 76087800 39696050 heritable phenotypic marker heart, lung and blood, 290
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
Ity2b 11 67187365 to 79923086 12735721 QTL immunity to S. typhimurium 2b
Tsr1 11 74898080 to 74909340 11260 + protein coding gene TSR1 20S rRNA accumulation
Srr 11 74906359 to 74925948 19589 - protein coding gene serine racemase
Tssr109154 11 74908056 to 74908070 14 - TSS region transcription start site region 109154
D11Jcs5 11 74913887 to 74914060 173 DNA segment DNA segment, Chr 11, John C. Schimenti 5
D11Bhm11 11 74916404 to 74916485 81 DNA segment DNA segment, Chr 11, Boehm 11
Cpgi3250 11 74925403 to 74926444 1041 CpG island CpG island 3250
Tssr109155 11 74925658 to 74925716 58 - TSS region transcription start site region 109155
Tssr102917 11 74925816 to 74925833 17 + TSS region transcription start site region 102917
Tssr102918 11 74925837 to 74925867 30 + TSS region transcription start site region 102918
Smg6 11 74925872 to 75164448 238576 + protein coding gene Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr102919 11 74925878 to 74925909 31 + TSS region transcription start site region 102919
Tssr109156 11 74925925 to 74925985 60 - TSS region transcription start site region 109156
Tssr102920 11 74926081 to 74926133 52 + TSS region transcription start site region 102920
Tssr102921 11 74926864 to 74926887 23 + TSS region transcription start site region 102921
Tssr109157 11 74927519 to 74927528 9 - TSS region transcription start site region 109157
Tssr102922 11 74927692 to 74927697 5 + TSS region transcription start site region 102922
Tssr102923 11 74927712 to 74927722 10 + TSS region transcription start site region 102923
Tssr102924 11 74927726 to 74927731 5 + TSS region transcription start site region 102924
Gm22733 11 74936061 to 74936151 90 - snRNA gene predicted gene, 22733
D11Bhm12 11 74970632 to 74970737 105 DNA segment DNA segment, Chr 11, Boehm 12
Tssr102925 11 74981766 to 74981802 36 + TSS region transcription start site region 102925
D11Bhm13 11 74986755 to 74986864 109 DNA segment DNA segment, Chr 11, Boehm 13
Gm28180 11 74992773 to 74993494 721 - antisense lncRNA gene predicted gene 28180
D11Ertd72e 11 74993654 to 74993867 213 DNA segment DNA segment, Chr 11, ERATO Doi 72, expressed
D11Bhm14 11 75017315 to 75017398 83 DNA segment DNA segment, Chr 11, Boehm 14
Gm12333 11 75036476 to 75039348 2872 - antisense lncRNA gene predicted gene 12333
Tssr102926 11 75038549 to 75038568 19 + TSS region transcription start site region 102926
D11Bhm16 11 75060148 to 75060241 93 DNA segment DNA segment, Chr 11, Boehm 16
Tssr102927 11 75063115 to 75063116 1 + TSS region transcription start site region 102927
Gm12335 11 75066436 to 75066762 326 - pseudogene predicted gene 12335
Rps12-ps19 11 75070863 to 75071228 365 - pseudogene ribosomal protein S12, pseudogene 19
Tssr109158 11 75071297 to 75071300 3 - TSS region transcription start site region 109158
D11Jcs6 11 75087017 to 75087187 170 DNA segment DNA segment, Chr 11, John C. Schimenti 6
D11Bhm17 11 75104031 to 75104131 100 DNA segment DNA segment, Chr 11, Boehm 17
D11Bhm18 11 75104223 to 75104309 86 DNA segment DNA segment, Chr 11, Boehm 18
D11Bhm19 11 75128926 to 75129007 81 DNA segment DNA segment, Chr 11, Boehm 19
Hic1 11 75164565 to 75169519 4954 - protein coding gene hypermethylated in cancer 1
Cpgi3251 11 75165061 to 75169413 4352 CpG island CpG island 3251
Tssr109159 11 75168152 to 75168156 4 - TSS region transcription start site region 109159
Tssr109160 11 75169137 to 75169151 14 - TSS region transcription start site region 109160
Tssr109161 11 75169167 to 75169176 9 - TSS region transcription start site region 109161
Cpgi3252 11 75170119 to 75170923 804 CpG island CpG island 3252
Cpgi3253 11 75171333 to 75171502 169 CpG island CpG island 3253
Cpgi3254 11 75172076 to 75174051 1975 CpG island CpG island 3254
Tssr102928 11 75172444 to 75172455 11 + TSS region transcription start site region 102928
Tssr102929 11 75172471 to 75172478 7 + TSS region transcription start site region 102929
Tssr102930 11 75172553 to 75172569 16 + TSS region transcription start site region 102930
1700016P03Rik 11 75172560 to 75177633 5073 + unclassified non-coding RNA gene RIKEN cDNA 1700016P03 gene
Mir212 11 75173388 to 75173478 90 + miRNA gene microRNA 212
Mirc19 11 75173388 to 75173747 359 complex/cluster/region microRNA cluster 19, including Mir212 through Mir132
Mir132 11 75173682 to 75173747 65 + miRNA gene microRNA 132
Ovca2 11 75175943 to 75178808 2865 - protein coding gene candidate tumor suppressor in ovarian cancer 2
Dph1 11 75177643 to 75190483 12840 - protein coding gene diphthamide biosynthesis 1
Cpgi3255 11 75178452 to 75179229 777 CpG island CpG island 3255
Tssr109162 11 75178792 to 75178830 38 - TSS region transcription start site region 109162
Cpgi3256 11 75190113 to 75190737 624 CpG island CpG island 3256
Tssr109163 11 75190458 to 75190488 30 - TSS region transcription start site region 109163
Cpgi3257 11 75193105 to 75195625 2520 CpG island CpG island 3257
Tssr102931 11 75193797 to 75193864 67 + TSS region transcription start site region 102931
Tssr102932 11 75193868 to 75193877 9 + TSS region transcription start site region 102932
Tssr102933 11 75193991 to 75193998 7 + TSS region transcription start site region 102933
Rtn4rl1 11 75193993 to 75267769 73776 + protein coding gene reticulon 4 receptor-like 1
Tssr109164 11 75195309 to 75195319 10 - TSS region transcription start site region 109164
Tssr102934 11 75206827 to 75206832 5 + TSS region transcription start site region 102934
Cpgi3258 11 75213407 to 75214067 660 CpG island CpG island 3258
Tssr102935 11 75214103 to 75214127 24 + TSS region transcription start site region 102935
Gm35169 11 75243273 to 75246360 3087 - lncRNA gene predicted gene, 35169
Gm35117 11 75254064 to 75274183 20119 - lncRNA gene predicted gene, 35117
Tssr102936 11 75272079 to 75272080 1 + TSS region transcription start site region 102936
Cpgi3259 11 75281531 to 75281755 224 CpG island CpG island 3259
Tssr109165 11 75297869 to 75297880 11 - TSS region transcription start site region 109165
Rpa1 11 75300259 to 75348383 48124 - protein coding gene replication protein A1
Gm47300 11 75318488 to 75318608 120 - miRNA gene predicted gene, 47300
Tssr109166 11 75318893 to 75318918 25 - TSS region transcription start site region 109166
D11Bhm21 11 75322393 to 75322502 109 DNA segment DNA segment, Chr 11, Boehm 21
Tssr109167 11 75336789 to 75336810 21 - TSS region transcription start site region 109167
Tssr109168 11 75341063 to 75341108 45 - TSS region transcription start site region 109168
Tssr109169 11 75344320 to 75344324 4 - TSS region transcription start site region 109169
Cpgi3260 11 75348015 to 75348816 801 CpG island CpG island 3260
Tssr109170 11 75348261 to 75348323 62 - TSS region transcription start site region 109170
Tssr109171 11 75348335 to 75348342 7 - TSS region transcription start site region 109171
Smyd4 11 75348433 to 75405705 57272 + protein coding gene SET and MYND domain containing 4
Tssr102937 11 75348493 to 75348560 67 + TSS region transcription start site region 102937
Serpinf1 11 75410029 to 75422623 12594 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 1
Tssr109172 11 75414965 to 75414978 13 - TSS region transcription start site region 109172
Tssr109173 11 75415045 to 75415056 11 - TSS region transcription start site region 109173
Tssr109174 11 75415060 to 75415077 17 - TSS region transcription start site region 109174
Tssr109175 11 75415106 to 75415118 12 - TSS region transcription start site region 109175
Tssr109176 11 75415127 to 75415141 14 - TSS region transcription start site region 109176
Tssr109177 11 75415144 to 75415151 7 - TSS region transcription start site region 109177
Tssr109178 11 75415625 to 75415648 23 - TSS region transcription start site region 109178
Tssr102938 11 75415639 to 75415657 18 + TSS region transcription start site region 102938
Tssr109179 11 75415685 to 75415701 16 - TSS region transcription start site region 109179
Tssr109180 11 75415719 to 75415733 14 - TSS region transcription start site region 109180
Tssr109181 11 75416254 to 75416260 6 - TSS region transcription start site region 109181
Tssr109182 11 75416279 to 75416290 11 - TSS region transcription start site region 109182
Tssr109183 11 75416335 to 75416353 18 - TSS region transcription start site region 109183
Tssr109184 11 75416377 to 75416392 15 - TSS region transcription start site region 109184
Tssr109185 11 75422524 to 75422561 37 - TSS region transcription start site region 109185
Tssr109186 11 75422587 to 75422609 22 - TSS region transcription start site region 109186
Gm35337 11 75422663 to 75426377 3714 + lncRNA gene predicted gene, 35337
Gm12336 11 75422731 to 75423340 609 - lincRNA gene predicted gene 12336
Gm12337 11 75427753 to 75428152 399 + pseudogene predicted gene 12337
Tssr109187 11 75431313 to 75431324 11 - TSS region transcription start site region 109187
Tssr109188 11 75431353 to 75431374 21 - TSS region transcription start site region 109188
Serpinf2 11 75431736 to 75439501 7765 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 2
Tssr109189 11 75432528 to 75432538 10 - TSS region transcription start site region 109189
Tssr109190 11 75436801 to 75436817 16 - TSS region transcription start site region 109190
Tssr109191 11 75437421 to 75437431 10 - TSS region transcription start site region 109191
Tssr109192 11 75437446 to 75437471 25 - TSS region transcription start site region 109192
Gm35391 11 75438079 to 75439390 1311 + lncRNA gene predicted gene, 35391
Tssr109193 11 75438242 to 75438281 39 - TSS region transcription start site region 109193
Tssr3575 11 75438368 to 75438372 4 + TSS region transcription start site region 3575
Tssr109194 11 75438435 to 75438438 3 - TSS region transcription start site region 109194
Tssr109195 11 75438923 to 75438946 23 - TSS region transcription start site region 109195
Tssr109196 11 75439475 to 75439486 11 - TSS region transcription start site region 109196
Tssr109197 11 75439489 to 75439531 42 - TSS region transcription start site region 109197
Tssr109198 11 75439551 to 75439558 7 - TSS region transcription start site region 109198
Tssr109199 11 75439573 to 75439581 8 - TSS region transcription start site region 109199
Tssr109200 11 75439587 to 75439592 5 - TSS region transcription start site region 109200
Wdr81 11 75440944 to 75454717 13773 - protein coding gene WD repeat domain 81
Cpgi3261 11 75441775 to 75441980 205 CpG island CpG island 3261
Tssr109201 11 75449884 to 75449898 14 - TSS region transcription start site region 109201
Tssr109202 11 75449899 to 75449910 11 - TSS region transcription start site region 109202
Tssr109203 11 75451109 to 75451127 18 - TSS region transcription start site region 109203
Tssr102939 11 75452720 to 75452724 4 + TSS region transcription start site region 102939
Cpgi3262 11 75454035 to 75454898 863 CpG island CpG island 3262
Tssr109204 11 75454638 to 75454654 16 - TSS region transcription start site region 109204
Tssr109205 11 75454656 to 75454721 65 - TSS region transcription start site region 109205
Tssr102940 11 75459437 to 75459462 25 + TSS region transcription start site region 102940
Tssr109206 11 75460474 to 75460485 11 - TSS region transcription start site region 109206
Tssr102941 11 75460693 to 75460704 11 + TSS region transcription start site region 102941
Tssr109207 11 75461127 to 75461182 55 - TSS region transcription start site region 109207
Cpgi3263 11 75461363 to 75462311 948 CpG island CpG island 3263
Mir22hg 11 75461539 to 75466676 5137 + lncRNA gene Mir22 host gene (non-protein coding)
Tssr102942 11 75461598 to 75461609 11 + TSS region transcription start site region 102942
Tssr102943 11 75461624 to 75461641 17 + TSS region transcription start site region 102943
Tssr102944 11 75461662 to 75461665 3 + TSS region transcription start site region 102944
Tssr102945 11 75461666 to 75461686 20 + TSS region transcription start site region 102945
Tssr102946 11 75463671 to 75463683 12 + TSS region transcription start site region 102946
Mir22 11 75463716 to 75463810 94 + miRNA gene microRNA 22
Tssr102947 11 75463793 to 75463797 4 + TSS region transcription start site region 102947
Tssr102948 11 75463926 to 75463943 17 + TSS region transcription start site region 102948
Tssr102949 11 75463985 to 75464010 25 + TSS region transcription start site region 102949
Tssr102950 11 75464046 to 75464116 70 + TSS region transcription start site region 102950
Cpgi3264 11 75467927 to 75468397 470 CpG island CpG island 3264
Tlcd2 11 75468024 to 75470899 2875 + protein coding gene TLC domain containing 2
Tssr102951 11 75468040 to 75468096 56 + TSS region transcription start site region 102951
Tssr102952 11 75468129 to 75468136 7 + TSS region transcription start site region 102952
Tssr102953 11 75468161 to 75468184 23 + TSS region transcription start site region 102953
Tssr102954 11 75468195 to 75468204 9 + TSS region transcription start site region 102954
Tssr109208 11 75470774 to 75470777 3 - TSS region transcription start site region 109208
Cpgi3265 11 75486562 to 75487332 770 CpG island CpG island 3265
Tssr102955 11 75486793 to 75486808 15 + TSS region transcription start site region 102955
Tssr102956 11 75486813 to 75486866 53 + TSS region transcription start site region 102956
Prpf8 11 75486816 to 75509449 22633 + protein coding gene pre-mRNA processing factor 8
Tssr102957 11 75487133 to 75487150 17 + TSS region transcription start site region 102957
Tssr102958 11 75489393 to 75489397 4 + TSS region transcription start site region 102958
Tssr102959 11 75490454 to 75490475 21 + TSS region transcription start site region 102959
Tssr102960 11 75509950 to 75509997 47 + TSS region transcription start site region 102960
Tssr102961 11 75510077 to 75510104 27 + TSS region transcription start site region 102961
Cpgi3266 11 75510084 to 75510951 867 CpG island CpG island 3266
Rilp 11 75510094 to 75513168 3074 + protein coding gene Rab interacting lysosomal protein
Tssr102962 11 75510106 to 75510128 22 + TSS region transcription start site region 102962
Tssr102963 11 75513530 to 75513541 11 + TSS region transcription start site region 102963
Scarf1 11 75513540 to 75526582 13042 + protein coding gene scavenger receptor class F, member 1
Tssr102964 11 75513548 to 75513582 34 + TSS region transcription start site region 102964
Cpgi3267 11 75515194 to 75515744 550 CpG island CpG island 3267
Tssr102965 11 75516371 to 75516378 7 + TSS region transcription start site region 102965
Gm45606 11 75530277 to 75533071 2794 - antisense lncRNA gene predicted gene 45606
Cpgi3268 11 75530627 to 75532878 2251 CpG island CpG island 3268
Tssr102966 11 75531690 to 75531732 42 + TSS region transcription start site region 102966
Slc43a2 11 75531694 to 75577575 45881 + protein coding gene solute carrier family 43, member 2
Tssr109209 11 75531898 to 75531909 11 - TSS region transcription start site region 109209
Tssr102967 11 75532006 to 75532026 20 + TSS region transcription start site region 102967
Tssr102968 11 75532099 to 75532125 26 + TSS region transcription start site region 102968
Tssr102969 11 75532127 to 75532151 24 + TSS region transcription start site region 102969
Tssr102970 11 75532164 to 75532187 23 + TSS region transcription start site region 102970
Tssr102971 11 75532196 to 75532220 24 + TSS region transcription start site region 102971
Tssr102972 11 75532232 to 75532248 16 + TSS region transcription start site region 102972
Tssr102973 11 75532268 to 75532280 12 + TSS region transcription start site region 102973
Tssr109210 11 75533024 to 75533035 11 - TSS region transcription start site region 109210
Tssr109211 11 75533063 to 75533082 19 - TSS region transcription start site region 109211
Tssr109212 11 75533091 to 75533108 17 - TSS region transcription start site region 109212
Tssr102974 11 75533403 to 75533414 11 + TSS region transcription start site region 102974
Tssr102975 11 75533455 to 75533530 75 + TSS region transcription start site region 102975
Tssr102976 11 75550132 to 75550155 23 + TSS region transcription start site region 102976
Mir3971 11 75551429 to 75551511 82 + miRNA gene microRNA 3971
Tssr3576 11 75561085 to 75561110 25 - TSS region transcription start site region 3576
D11Jcs7 11 75563645 to 75563894 249 DNA segment DNA segment, Chr 11, John C. Schimenti 7
Tssr102977 11 75563653 to 75563666 13 + TSS region transcription start site region 102977
Tssr102978 11 75566859 to 75566875 16 + TSS region transcription start site region 102978
Tssr102979 11 75567979 to 75567993 14 + TSS region transcription start site region 102979
Tssr102980 11 75572459 to 75572485 26 + TSS region transcription start site region 102980
Tssr102981 11 75572512 to 75572545 33 + TSS region transcription start site region 102981
Tssr102982 11 75572719 to 75572735 16 + TSS region transcription start site region 102982