Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:74905061-75429413

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsr1 11 74898080 to 74909340 11260 + protein coding gene TSR1 20S rRNA accumulation
Snord91a 11 74905446 to 74905505 59 + snoRNA gene small nucleolar RNA, C/D box 91A
Gm22771 11 74906109 to 74906199 90 + snoRNA gene predicted gene, 22771
Srr 11 74906359 to 74925948 19589 - protein coding gene serine racemase
Tssr109154 11 74908056 to 74908070 14 - TSS region transcription start site region 109154
D11Jcs5 11 74913887 to 74914060 173 DNA segment DNA segment, Chr 11, John C. Schimenti 5
D11Bhm11 11 74916404 to 74916485 81 DNA segment DNA segment, Chr 11, Boehm 11
Cpgi3250 11 74925403 to 74926444 1041 CpG island CpG island 3250
Tssr109155 11 74925658 to 74925716 58 - TSS region transcription start site region 109155
Tssr102917 11 74925816 to 74925833 17 + TSS region transcription start site region 102917
Tssr102918 11 74925837 to 74925867 30 + TSS region transcription start site region 102918
Smg6 11 74925872 to 75164448 238576 + protein coding gene Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr102919 11 74925878 to 74925909 31 + TSS region transcription start site region 102919
Tssr109156 11 74925925 to 74925985 60 - TSS region transcription start site region 109156
Tssr102920 11 74926081 to 74926133 52 + TSS region transcription start site region 102920
Tssr102921 11 74926864 to 74926887 23 + TSS region transcription start site region 102921
Tssr109157 11 74927519 to 74927528 9 - TSS region transcription start site region 109157
Tssr102922 11 74927692 to 74927697 5 + TSS region transcription start site region 102922
Tssr102923 11 74927712 to 74927722 10 + TSS region transcription start site region 102923
Tssr102924 11 74927726 to 74927731 5 + TSS region transcription start site region 102924
Gm22733 11 74936061 to 74936151 90 - snRNA gene predicted gene, 22733
D11Bhm12 11 74970632 to 74970737 105 DNA segment DNA segment, Chr 11, Boehm 12
Tssr102925 11 74981766 to 74981802 36 + TSS region transcription start site region 102925
D11Bhm13 11 74986755 to 74986864 109 DNA segment DNA segment, Chr 11, Boehm 13
Gm28180 11 74992773 to 74993494 721 - antisense lncRNA gene predicted gene 28180
D11Ertd72e 11 74993654 to 74993867 213 DNA segment DNA segment, Chr 11, ERATO Doi 72, expressed
D11Bhm14 11 75017315 to 75017398 83 DNA segment DNA segment, Chr 11, Boehm 14
Gm12333 11 75036476 to 75039348 2872 - antisense lncRNA gene predicted gene 12333
Tssr102926 11 75038549 to 75038568 19 + TSS region transcription start site region 102926
D11Bhm16 11 75060148 to 75060241 93 DNA segment DNA segment, Chr 11, Boehm 16
Tssr102927 11 75063115 to 75063116 1 + TSS region transcription start site region 102927
Gm12335 11 75066436 to 75066762 326 - pseudogene predicted gene 12335
Rps12-ps19 11 75070863 to 75071228 365 - pseudogene ribosomal protein S12, pseudogene 19
Tssr109158 11 75071297 to 75071300 3 - TSS region transcription start site region 109158
D11Jcs6 11 75087017 to 75087187 170 DNA segment DNA segment, Chr 11, John C. Schimenti 6
D11Bhm17 11 75104031 to 75104131 100 DNA segment DNA segment, Chr 11, Boehm 17
D11Bhm18 11 75104223 to 75104309 86 DNA segment DNA segment, Chr 11, Boehm 18
D11Bhm19 11 75128926 to 75129007 81 DNA segment DNA segment, Chr 11, Boehm 19
Hic1 11 75164565 to 75169519 4954 - protein coding gene hypermethylated in cancer 1
Cpgi3251 11 75165061 to 75169413 4352 CpG island CpG island 3251
Tssr109159 11 75168152 to 75168156 4 - TSS region transcription start site region 109159
Tssr109160 11 75169137 to 75169151 14 - TSS region transcription start site region 109160
Tssr109161 11 75169167 to 75169176 9 - TSS region transcription start site region 109161
Cpgi3252 11 75170119 to 75170923 804 CpG island CpG island 3252
Cpgi3253 11 75171333 to 75171502 169 CpG island CpG island 3253
Cpgi3254 11 75172076 to 75174051 1975 CpG island CpG island 3254
Tssr102928 11 75172444 to 75172455 11 + TSS region transcription start site region 102928
Tssr102929 11 75172471 to 75172478 7 + TSS region transcription start site region 102929
Tssr102930 11 75172553 to 75172569 16 + TSS region transcription start site region 102930
1700016P03Rik 11 75172560 to 75177633 5073 + unclassified non-coding RNA gene RIKEN cDNA 1700016P03 gene
Mir212 11 75173388 to 75173478 90 + miRNA gene microRNA 212
Mirc19 11 75173388 to 75173747 359 complex/cluster/region microRNA cluster 19, including Mir212 through Mir132
Mir132 11 75173682 to 75173747 65 + miRNA gene microRNA 132
Ovca2 11 75175943 to 75178808 2865 - protein coding gene candidate tumor suppressor in ovarian cancer 2
Dph1 11 75177643 to 75190483 12840 - protein coding gene diphthamide biosynthesis 1
Cpgi3255 11 75178452 to 75179229 777 CpG island CpG island 3255
Tssr109162 11 75178792 to 75178830 38 - TSS region transcription start site region 109162
Cpgi3256 11 75190113 to 75190737 624 CpG island CpG island 3256
Tssr109163 11 75190458 to 75190488 30 - TSS region transcription start site region 109163
Cpgi3257 11 75193105 to 75195625 2520 CpG island CpG island 3257
Tssr102931 11 75193797 to 75193864 67 + TSS region transcription start site region 102931
Tssr102932 11 75193868 to 75193877 9 + TSS region transcription start site region 102932
Tssr102933 11 75193991 to 75193998 7 + TSS region transcription start site region 102933
Rtn4rl1 11 75193993 to 75267769 73776 + protein coding gene reticulon 4 receptor-like 1
Tssr109164 11 75195309 to 75195319 10 - TSS region transcription start site region 109164
Tssr102934 11 75206827 to 75206832 5 + TSS region transcription start site region 102934
Cpgi3258 11 75213407 to 75214067 660 CpG island CpG island 3258
Tssr102935 11 75214103 to 75214127 24 + TSS region transcription start site region 102935
Gm35169 11 75243273 to 75246360 3087 - lncRNA gene predicted gene, 35169
Gm35117 11 75254064 to 75274183 20119 - lncRNA gene predicted gene, 35117
Tssr102936 11 75272079 to 75272080 1 + TSS region transcription start site region 102936
Cpgi3259 11 75281531 to 75281755 224 CpG island CpG island 3259
Tssr109165 11 75297869 to 75297880 11 - TSS region transcription start site region 109165
Rpa1 11 75300259 to 75348383 48124 - protein coding gene replication protein A1
Gm47300 11 75318488 to 75318608 120 - miRNA gene predicted gene, 47300
Tssr109166 11 75318893 to 75318918 25 - TSS region transcription start site region 109166
D11Bhm21 11 75322393 to 75322502 109 DNA segment DNA segment, Chr 11, Boehm 21
Tssr109167 11 75336789 to 75336810 21 - TSS region transcription start site region 109167
Tssr109168 11 75341063 to 75341108 45 - TSS region transcription start site region 109168
Tssr109169 11 75344320 to 75344324 4 - TSS region transcription start site region 109169
Cpgi3260 11 75348015 to 75348816 801 CpG island CpG island 3260
Tssr109170 11 75348261 to 75348323 62 - TSS region transcription start site region 109170
Tssr109171 11 75348335 to 75348342 7 - TSS region transcription start site region 109171
Smyd4 11 75348433 to 75405705 57272 + protein coding gene SET and MYND domain containing 4
Tssr102937 11 75348493 to 75348560 67 + TSS region transcription start site region 102937
Serpinf1 11 75410029 to 75422623 12594 - protein coding gene serine (or cysteine) peptidase inhibitor, clade F, member 1
Tssr109172 11 75414965 to 75414978 13 - TSS region transcription start site region 109172
Tssr109173 11 75415045 to 75415056 11 - TSS region transcription start site region 109173
Tssr109174 11 75415060 to 75415077 17 - TSS region transcription start site region 109174
Tssr109175 11 75415106 to 75415118 12 - TSS region transcription start site region 109175
Tssr109176 11 75415127 to 75415141 14 - TSS region transcription start site region 109176
Tssr109177 11 75415144 to 75415151 7 - TSS region transcription start site region 109177
Tssr109178 11 75415625 to 75415648 23 - TSS region transcription start site region 109178
Tssr102938 11 75415639 to 75415657 18 + TSS region transcription start site region 102938
Tssr109179 11 75415685 to 75415701 16 - TSS region transcription start site region 109179
Tssr109180 11 75415719 to 75415733 14 - TSS region transcription start site region 109180
Tssr109181 11 75416254 to 75416260 6 - TSS region transcription start site region 109181
Tssr109182 11 75416279 to 75416290 11 - TSS region transcription start site region 109182
Tssr109183 11 75416335 to 75416353 18 - TSS region transcription start site region 109183
Tssr109184 11 75416377 to 75416392 15 - TSS region transcription start site region 109184
Tssr109185 11 75422524 to 75422561 37 - TSS region transcription start site region 109185
Tssr109186 11 75422587 to 75422609 22 - TSS region transcription start site region 109186
Gm35337 11 75422663 to 75426377 3714 + lncRNA gene predicted gene, 35337
Gm12336 11 75422731 to 75423340 609 - lincRNA gene predicted gene 12336
Gm12337 11 75427753 to 75428152 399 + pseudogene predicted gene 12337