Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:74490816-75360833

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae45 11 58599729 to 74863932 16264203 QTL experimental allergic encephalomyelitis susceptibility 45
Rap1gap2 11 74383483 to 74610910 227427 - protein coding gene RAP1 GTPase activating protein 2
Cpgi3238 11 74522025 to 74523772 1747 CpG island CpG island 3238
Tssr109120 11 74522574 to 74522593 19 - TSS region transcription start site region 109120
Tssr109121 11 74522598 to 74522630 32 - TSS region transcription start site region 109121
Tssr109122 11 74522738 to 74522808 70 - TSS region transcription start site region 109122
Tssr109123 11 74547100 to 74547112 12 - TSS region transcription start site region 109123
Tssr109124 11 74572681 to 74572690 9 - TSS region transcription start site region 109124
Tssr109125 11 74572692 to 74572728 36 - TSS region transcription start site region 109125
Tssr109126 11 74572735 to 74572750 15 - TSS region transcription start site region 109126
Cpgi3239 11 74589381 to 74590932 1551 CpG island CpG island 3239
Tssr109127 11 74590015 to 74590033 18 - TSS region transcription start site region 109127
Tssr109128 11 74590065 to 74590149 84 - TSS region transcription start site region 109128
Tssr109129 11 74590187 to 74590215 28 - TSS region transcription start site region 109129
Cpgi3240 11 74610429 to 74611204 775 CpG island CpG island 3240
Gm22993 11 74618260 to 74618513 253 - unclassified non-coding RNA gene predicted gene, 22993
Cpgi3241 11 74619137 to 74620163 1026 CpG island CpG island 3241
Tssr102899 11 74619594 to 74619643 49 + TSS region transcription start site region 102899
Ccdc92b 11 74619605 to 74641516 21911 + protein coding gene coiled-coil domain containing 92B
Tssr102900 11 74619676 to 74619714 38 + TSS region transcription start site region 102900
D11Bhm5 11 74622105 to 74622207 102 DNA segment DNA segment, Chr 11, Boehm 5
Cpgi3242 11 74637416 to 74639071 1655 CpG island CpG island 3242
Tssr109130 11 74638084 to 74638099 15 - TSS region transcription start site region 109130
Cpgi3243 11 74649120 to 74650619 1499 CpG island CpG island 3243
Tssr102901 11 74649462 to 74649520 58 + TSS region transcription start site region 102901
Cluh 11 74649495 to 74670847 21352 + protein coding gene clustered mitochondria (cluA/CLU1) homolog
Tssr102902 11 74649526 to 74649550 24 + TSS region transcription start site region 102902
Tssr3574 11 74649956 to 74649966 10 + TSS region transcription start site region 3574
Tssr102903 11 74649973 to 74649984 11 + TSS region transcription start site region 102903
Tssr102904 11 74650567 to 74650579 12 + TSS region transcription start site region 102904
Tssr102905 11 74653143 to 74653179 36 + TSS region transcription start site region 102905
Tssr102906 11 74662003 to 74662023 20 + TSS region transcription start site region 102906
Tssr102907 11 74665350 to 74665365 15 + TSS region transcription start site region 102907
Pafah1b1 11 74673949 to 74724384 50435 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
Tssr109131 11 74674370 to 74674381 11 - TSS region transcription start site region 109131
Tssr109132 11 74676613 to 74676616 3 - TSS region transcription start site region 109132
D11Bhm9 11 74678497 to 74678618 121 DNA segment DNA segment, Chr 11, Boehm 9
D11Bhm7 11 74680881 to 74680968 87 DNA segment DNA segment, Chr 11, Boehm 7
Tssr109133 11 74699692 to 74699696 4 - TSS region transcription start site region 109133
Tssr109134 11 74705617 to 74705630 13 - TSS region transcription start site region 109134
D11Mit352 11 74707235 to 74707475 240 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 352
Cpgi3244 11 74723231 to 74724837 1606 CpG island CpG island 3244
Tssr109135 11 74723829 to 74723860 31 - TSS region transcription start site region 109135
Tssr109136 11 74724029 to 74724091 62 - TSS region transcription start site region 109136
Tssr109137 11 74724132 to 74724160 28 - TSS region transcription start site region 109137
Tssr109138 11 74724305 to 74724329 24 - TSS region transcription start site region 109138
Tssr109139 11 74724332 to 74724393 61 - TSS region transcription start site region 109139
Tssr109140 11 74724687 to 74724702 15 - TSS region transcription start site region 109140
Gm24211 11 74728403 to 74728509 106 + snRNA gene predicted gene, 24211
Gm40198 11 74730779 to 74738018 7239 - lncRNA gene predicted gene, 40198
Gm16032 11 74732203 to 74732370 167 - pseudogene predicted gene 16032
Tssr109141 11 74756725 to 74756730 5 - TSS region transcription start site region 109141
D11Bhm4 11 74765235 to 74765473 238 DNA segment DNA segment, Chr 11, Boehm 4
Cpgi3245 11 74770645 to 74771493 848 CpG island CpG island 3245
Tssr109142 11 74770687 to 74770697 10 - TSS region transcription start site region 109142
Tssr109143 11 74770712 to 74770743 31 - TSS region transcription start site region 109143
Tssr102908 11 74770822 to 74770876 54 + TSS region transcription start site region 102908
Mettl16 11 74770836 to 74826855 56019 + protein coding gene methyltransferase like 16
Tssr102909 11 74770881 to 74770907 26 + TSS region transcription start site region 102909
Tssr102910 11 74770908 to 74770920 12 + TSS region transcription start site region 102910
Cpgi3246 11 74829699 to 74832484 2785 CpG island CpG island 3246
Tssr109144 11 74829891 to 74829902 11 - TSS region transcription start site region 109144
Tssr109145 11 74830659 to 74830689 30 - TSS region transcription start site region 109145
Tssr102911 11 74830888 to 74830903 15 + TSS region transcription start site region 102911
Tssr102912 11 74830907 to 74830920 13 + TSS region transcription start site region 102912
Mnt 11 74830920 to 74845725 14805 + protein coding gene max binding protein
Tssr102913 11 74830935 to 74831005 70 + TSS region transcription start site region 102913
Tssr102914 11 74831214 to 74831278 64 + TSS region transcription start site region 102914
Tssr109146 11 74831794 to 74831804 10 - TSS region transcription start site region 109146
Tssr109147 11 74831992 to 74832010 18 - TSS region transcription start site region 109147
Tssr109148 11 74832182 to 74832205 23 - TSS region transcription start site region 109148
Tssr109149 11 74832219 to 74832235 16 - TSS region transcription start site region 109149
Cpgi3247 11 74832737 to 74833137 400 CpG island CpG island 3247
Cpgi3248 11 74837463 to 74838836 1373 CpG island CpG island 3248
Tssr102915 11 74839236 to 74839247 11 + TSS region transcription start site region 102915
Sgsm2 11 74849261 to 74897060 47799 - protein coding gene small G protein signaling modulator 2
D11Bhm8 11 74851030 to 74851103 73 DNA segment DNA segment, Chr 11, Boehm 8
Tssr109150 11 74851186 to 74851202 16 - TSS region transcription start site region 109150
Tssr109151 11 74851856 to 74851863 7 - TSS region transcription start site region 109151
D11Nds1 11 74863834 to 74863932 98 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 1
Etohcta9 11 74863834 to 74863932 98 QTL ethanol conditioned taste aversion 9
Mir6926 11 74868127 to 74868194 67 - miRNA gene microRNA 6926
Tssr109152 11 74869255 to 74869296 41 - TSS region transcription start site region 109152
D11Bhm6 11 74875766 to 74875871 105 DNA segment DNA segment, Chr 11, Boehm 6
D11Bhm10 11 74881599 to 74881740 141 DNA segment DNA segment, Chr 11, Boehm 10
Cpgi3249 11 74896309 to 74898503 2194 CpG island CpG island 3249
Tssr109153 11 74897052 to 74897094 42 - TSS region transcription start site region 109153
Tsr1 11 74898080 to 74909340 11260 + protein coding gene TSR1 20S rRNA accumulation
Tssr102916 11 74898081 to 74898106 25 + TSS region transcription start site region 102916
Snord91a 11 74905446 to 74905505 59 + snoRNA gene small nucleolar RNA, C/D box 91A
Gm22771 11 74906109 to 74906199 90 + snoRNA gene predicted gene, 22771
Srr 11 74906359 to 74925948 19589 - protein coding gene serine racemase
Tssr109154 11 74908056 to 74908070 14 - TSS region transcription start site region 109154
D11Jcs5 11 74913887 to 74914060 173 DNA segment DNA segment, Chr 11, John C. Schimenti 5
D11Bhm11 11 74916404 to 74916485 81 DNA segment DNA segment, Chr 11, Boehm 11
Cpgi3250 11 74925403 to 74926444 1041 CpG island CpG island 3250
Tssr109155 11 74925658 to 74925716 58 - TSS region transcription start site region 109155
Tssr102917 11 74925816 to 74925833 17 + TSS region transcription start site region 102917
Tssr102918 11 74925837 to 74925867 30 + TSS region transcription start site region 102918
Smg6 11 74925872 to 75164448 238576 + protein coding gene Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr102919 11 74925878 to 74925909 31 + TSS region transcription start site region 102919
Tssr109156 11 74925925 to 74925985 60 - TSS region transcription start site region 109156
Tssr102920 11 74926081 to 74926133 52 + TSS region transcription start site region 102920
Tssr102921 11 74926864 to 74926887 23 + TSS region transcription start site region 102921
Tssr109157 11 74927519 to 74927528 9 - TSS region transcription start site region 109157
Tssr102922 11 74927692 to 74927697 5 + TSS region transcription start site region 102922
Tssr102923 11 74927712 to 74927722 10 + TSS region transcription start site region 102923
Tssr102924 11 74927726 to 74927731 5 + TSS region transcription start site region 102924
Gm22733 11 74936061 to 74936151 90 - snRNA gene predicted gene, 22733
D11Bhm12 11 74970632 to 74970737 105 DNA segment DNA segment, Chr 11, Boehm 12
Tssr102925 11 74981766 to 74981802 36 + TSS region transcription start site region 102925
D11Bhm13 11 74986755 to 74986864 109 DNA segment DNA segment, Chr 11, Boehm 13
Gm28180 11 74992773 to 74993494 721 - antisense lncRNA gene predicted gene 28180
D11Ertd72e 11 74993654 to 74993867 213 DNA segment DNA segment, Chr 11, ERATO Doi 72, expressed
D11Bhm14 11 75017315 to 75017398 83 DNA segment DNA segment, Chr 11, Boehm 14
Gm12333 11 75036476 to 75039348 2872 - antisense lncRNA gene predicted gene 12333
Tssr102926 11 75038549 to 75038568 19 + TSS region transcription start site region 102926
D11Bhm16 11 75060148 to 75060241 93 DNA segment DNA segment, Chr 11, Boehm 16
Tssr102927 11 75063115 to 75063116 1 + TSS region transcription start site region 102927
Gm12335 11 75066436 to 75066762 326 - pseudogene predicted gene 12335
Rps12-ps19 11 75070863 to 75071228 365 - pseudogene ribosomal protein S12, pseudogene 19
Tssr109158 11 75071297 to 75071300 3 - TSS region transcription start site region 109158
D11Jcs6 11 75087017 to 75087187 170 DNA segment DNA segment, Chr 11, John C. Schimenti 6
D11Bhm17 11 75104031 to 75104131 100 DNA segment DNA segment, Chr 11, Boehm 17
D11Bhm18 11 75104223 to 75104309 86 DNA segment DNA segment, Chr 11, Boehm 18
D11Bhm19 11 75128926 to 75129007 81 DNA segment DNA segment, Chr 11, Boehm 19
Hic1 11 75164565 to 75169519 4954 - protein coding gene hypermethylated in cancer 1
Cpgi3251 11 75165061 to 75169413 4352 CpG island CpG island 3251
Tssr109159 11 75168152 to 75168156 4 - TSS region transcription start site region 109159
Tssr109160 11 75169137 to 75169151 14 - TSS region transcription start site region 109160
Tssr109161 11 75169167 to 75169176 9 - TSS region transcription start site region 109161
Cpgi3252 11 75170119 to 75170923 804 CpG island CpG island 3252
Cpgi3253 11 75171333 to 75171502 169 CpG island CpG island 3253
Cpgi3254 11 75172076 to 75174051 1975 CpG island CpG island 3254
Tssr102928 11 75172444 to 75172455 11 + TSS region transcription start site region 102928
Tssr102929 11 75172471 to 75172478 7 + TSS region transcription start site region 102929
Tssr102930 11 75172553 to 75172569 16 + TSS region transcription start site region 102930
1700016P03Rik 11 75172560 to 75177633 5073 + unclassified non-coding RNA gene RIKEN cDNA 1700016P03 gene
Mirc19 11 75173388 to 75173747 359 complex/cluster/region microRNA cluster 19, including Mir212 through Mir132
Mir212 11 75173388 to 75173478 90 + miRNA gene microRNA 212
Mir132 11 75173682 to 75173747 65 + miRNA gene microRNA 132
Ovca2 11 75175943 to 75178808 2865 - protein coding gene candidate tumor suppressor in ovarian cancer 2
Dph1 11 75177643 to 75190483 12840 - protein coding gene diphthamide biosynthesis 1
Cpgi3255 11 75178452 to 75179229 777 CpG island CpG island 3255
Tssr109162 11 75178792 to 75178830 38 - TSS region transcription start site region 109162
Cpgi3256 11 75190113 to 75190737 624 CpG island CpG island 3256
Tssr109163 11 75190458 to 75190488 30 - TSS region transcription start site region 109163
Cpgi3257 11 75193105 to 75195625 2520 CpG island CpG island 3257
Tssr102931 11 75193797 to 75193864 67 + TSS region transcription start site region 102931
Tssr102932 11 75193868 to 75193877 9 + TSS region transcription start site region 102932
Tssr102933 11 75193991 to 75193998 7 + TSS region transcription start site region 102933
Rtn4rl1 11 75193993 to 75267769 73776 + protein coding gene reticulon 4 receptor-like 1
Tssr109164 11 75195309 to 75195319 10 - TSS region transcription start site region 109164
Tssr102934 11 75206827 to 75206832 5 + TSS region transcription start site region 102934
Cpgi3258 11 75213407 to 75214067 660 CpG island CpG island 3258
Tssr102935 11 75214103 to 75214127 24 + TSS region transcription start site region 102935
Gm35169 11 75243273 to 75246360 3087 - lncRNA gene predicted gene, 35169
Gm35117 11 75254064 to 75274183 20119 - lncRNA gene predicted gene, 35117
Tssr102936 11 75272079 to 75272080 1 + TSS region transcription start site region 102936
Cpgi3259 11 75281531 to 75281755 224 CpG island CpG island 3259
Tssr109165 11 75297869 to 75297880 11 - TSS region transcription start site region 109165
Rpa1 11 75300259 to 75348383 48124 - protein coding gene replication protein A1
Gm47300 11 75318488 to 75318608 120 - miRNA gene predicted gene, 47300
Tssr109166 11 75318893 to 75318918 25 - TSS region transcription start site region 109166
D11Bhm21 11 75322393 to 75322502 109 DNA segment DNA segment, Chr 11, Boehm 21
Tssr109167 11 75336789 to 75336810 21 - TSS region transcription start site region 109167
Tssr109168 11 75341063 to 75341108 45 - TSS region transcription start site region 109168
Tssr109169 11 75344320 to 75344324 4 - TSS region transcription start site region 109169
Cpgi3260 11 75348015 to 75348816 801 CpG island CpG island 3260
Tssr109170 11 75348261 to 75348323 62 - TSS region transcription start site region 109170
Tssr109171 11 75348335 to 75348342 7 - TSS region transcription start site region 109171
Smyd4 11 75348433 to 75405705 57272 + protein coding gene SET and MYND domain containing 4
Tssr102937 11 75348493 to 75348560 67 + TSS region transcription start site region 102937