Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:73780715-74781732

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Olfr390 11 73786940 to 73787875 935 + protein coding gene olfactory receptor 390
Olfr391-ps 11 73798753 to 73802984 4231 - protein coding gene olfactory receptor 391, pseudogene
Olfr392 11 73814142 to 73816877 2735 - protein coding gene olfactory receptor 392
Gm12329 11 73837722 to 73839541 1819 - pseudogene predicted gene 12329
Opfaq3 11 73846715 to 82178599 8331884 QTL open field activity QTL 3
Olfr393 11 73847185 to 73848123 938 - protein coding gene olfactory receptor 393
Gm44638 11 73869586 to 73869660 74 - pseudogene predicted gene 44638
Olfr394 11 73887438 to 73888370 932 - protein coding gene olfactory receptor 394
Gm44575 11 73895728 to 73895768 40 - pseudogene predicted gene 44575
Olfr395 11 73906552 to 73907490 938 - protein coding gene olfactory receptor 395
Olfr396-ps1 11 73928007 to 73928942 935 + polymorphic pseudogene olfactory receptor 396, pseudogene 1
Olfr23 11 73936677 to 73942658 5981 + protein coding gene olfactory receptor 23
Olfr22-ps1 11 73954692 to 73955625 933 + polymorphic pseudogene olfactory receptor 22, pseudogene 1
Olfr397 11 73964610 to 73965557 947 + protein coding gene olfactory receptor 397
Olfr398 11 73983662 to 73984606 944 - protein coding gene olfactory receptor 398
Olfr139 11 74044325 to 74045272 947 - protein coding gene olfactory receptor 139
Olfr399 11 74053776 to 74054778 1002 - protein coding gene olfactory receptor 399
Zfp616 11 74069955 to 74087292 17337 + protein coding gene zinc finger protein 616
Gm12331 11 74077519 to 74078140 621 - pseudogene predicted gene 12331
Olfr400-ps1 11 74104841 to 74110791 5950 + pseudogene olfactory receptor 400, pseudogene 1
Olfr401 11 74121291 to 74122238 947 + protein coding gene olfactory receptor 401
n-TKctt5 11 74137315 to 74137387 72 - tRNA gene nuclear encoded tRNA lysine 5 (anticodon CTT)
Olfr402 11 74155156 to 74156103 947 + protein coding gene olfactory receptor 402
Olfr403 11 74186249 to 74196446 10197 + protein coding gene olfactory receptor 403
Olfr43 11 74206198 to 74207289 1091 - protein coding gene olfactory receptor 43
Olfr404-ps1 11 74239566 to 74240504 938 + polymorphic pseudogene olfactory receptor 404, pseudogene 1
Olfr405-ps1 11 74255699 to 74256631 932 - pseudogene olfactory receptor 405, pseudogene 1
Olfr406 11 74269391 to 74270362 971 + protein coding gene olfactory receptor 406
Olfr407-ps1 11 74280715 to 74281732 1017 - pseudogene olfactory receptor 407, pseudogene 1
Olfr59 11 74283752 to 74289646 5894 + protein coding gene olfactory receptor 59
Olfr408-ps1 11 74298136 to 74299073 937 - pseudogene olfactory receptor 408, pseudogene 1
Olfr409-ps1 11 74317027 to 74317997 970 + polymorphic pseudogene olfactory receptor 409, pseudogene 1
n-R5s71 11 74319792 to 74319910 118 + rRNA gene nuclear encoded rRNA 5S 71
Gm12332 11 74322546 to 74323467 921 + pseudogene predicted gene 12332
Olfr410 11 74334282 to 74335229 947 - protein coding gene olfactory receptor 410
Olfr411 11 74346624 to 74347672 1048 - protein coding gene olfactory receptor 411
Olfr412 11 74364671 to 74365609 938 + protein coding gene olfactory receptor 412
D11Bhm1 11 74370648 to 74370743 95 DNA segment DNA segment, Chr 11, Boehm 1
D11Bhm3 11 74380422 to 74380488 66 DNA segment DNA segment, Chr 11, Boehm 3
Rap1gap2 11 74383483 to 74610910 227427 - protein coding gene RAP1 GTPase activating protein 2
D11Bhm2 11 74422845 to 74422936 91 DNA segment DNA segment, Chr 11, Boehm 2
Tssr109119 11 74457258 to 74457296 38 - TSS region transcription start site region 109119
Cpgi3238 11 74522025 to 74523772 1747 CpG island CpG island 3238
Tssr109120 11 74522574 to 74522593 19 - TSS region transcription start site region 109120
Tssr109121 11 74522598 to 74522630 32 - TSS region transcription start site region 109121
Tssr109122 11 74522738 to 74522808 70 - TSS region transcription start site region 109122
Tssr109123 11 74547100 to 74547112 12 - TSS region transcription start site region 109123
Tssr109124 11 74572681 to 74572690 9 - TSS region transcription start site region 109124
Tssr109125 11 74572692 to 74572728 36 - TSS region transcription start site region 109125
Tssr109126 11 74572735 to 74572750 15 - TSS region transcription start site region 109126
Cpgi3239 11 74589381 to 74590932 1551 CpG island CpG island 3239
Tssr109127 11 74590015 to 74590033 18 - TSS region transcription start site region 109127
Tssr109128 11 74590065 to 74590149 84 - TSS region transcription start site region 109128
Tssr109129 11 74590187 to 74590215 28 - TSS region transcription start site region 109129
Cpgi3240 11 74610429 to 74611204 775 CpG island CpG island 3240
Gm22993 11 74618260 to 74618513 253 - unclassified non-coding RNA gene predicted gene, 22993
Cpgi3241 11 74619137 to 74620163 1026 CpG island CpG island 3241
Tssr102899 11 74619594 to 74619643 49 + TSS region transcription start site region 102899
Ccdc92b 11 74619605 to 74641516 21911 + protein coding gene coiled-coil domain containing 92B
Tssr102900 11 74619676 to 74619714 38 + TSS region transcription start site region 102900
D11Bhm5 11 74622105 to 74622207 102 DNA segment DNA segment, Chr 11, Boehm 5
Cpgi3242 11 74637416 to 74639071 1655 CpG island CpG island 3242
Tssr109130 11 74638084 to 74638099 15 - TSS region transcription start site region 109130
Cpgi3243 11 74649120 to 74650619 1499 CpG island CpG island 3243
Tssr102901 11 74649462 to 74649520 58 + TSS region transcription start site region 102901
Cluh 11 74649495 to 74670847 21352 + protein coding gene clustered mitochondria (cluA/CLU1) homolog
Tssr102902 11 74649526 to 74649550 24 + TSS region transcription start site region 102902
Tssr3574 11 74649956 to 74649966 10 + TSS region transcription start site region 3574
Tssr102903 11 74649973 to 74649984 11 + TSS region transcription start site region 102903
Tssr102904 11 74650567 to 74650579 12 + TSS region transcription start site region 102904
Tssr102905 11 74653143 to 74653179 36 + TSS region transcription start site region 102905
Tssr102906 11 74662003 to 74662023 20 + TSS region transcription start site region 102906
Tssr102907 11 74665350 to 74665365 15 + TSS region transcription start site region 102907
Pafah1b1 11 74673949 to 74724384 50435 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
Tssr109131 11 74674370 to 74674381 11 - TSS region transcription start site region 109131
Tssr109132 11 74676613 to 74676616 3 - TSS region transcription start site region 109132
D11Bhm9 11 74678497 to 74678618 121 DNA segment DNA segment, Chr 11, Boehm 9
D11Bhm7 11 74680881 to 74680968 87 DNA segment DNA segment, Chr 11, Boehm 7
Tssr109133 11 74699692 to 74699696 4 - TSS region transcription start site region 109133
Tssr109134 11 74705617 to 74705630 13 - TSS region transcription start site region 109134
D11Mit352 11 74707235 to 74707475 240 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 352
Cpgi3244 11 74723231 to 74724837 1606 CpG island CpG island 3244
Tssr109135 11 74723829 to 74723860 31 - TSS region transcription start site region 109135
Tssr109136 11 74724029 to 74724091 62 - TSS region transcription start site region 109136
Tssr109137 11 74724132 to 74724160 28 - TSS region transcription start site region 109137
Tssr109138 11 74724305 to 74724329 24 - TSS region transcription start site region 109138
Tssr109139 11 74724332 to 74724393 61 - TSS region transcription start site region 109139
Tssr109140 11 74724687 to 74724702 15 - TSS region transcription start site region 109140
Gm24211 11 74728403 to 74728509 106 + snRNA gene predicted gene, 24211
Gm40198 11 74730779 to 74738018 7239 - lncRNA gene predicted gene, 40198
Gm16032 11 74732203 to 74732370 167 - pseudogene predicted gene 16032
Tssr109141 11 74756725 to 74756730 5 - TSS region transcription start site region 109141
D11Bhm4 11 74765235 to 74765473 238 DNA segment DNA segment, Chr 11, Boehm 4
Cpgi3245 11 74770645 to 74771493 848 CpG island CpG island 3245
Tssr109142 11 74770687 to 74770697 10 - TSS region transcription start site region 109142
Tssr109143 11 74770712 to 74770743 31 - TSS region transcription start site region 109143
Tssr102908 11 74770822 to 74770876 54 + TSS region transcription start site region 102908
Mettl16 11 74770836 to 74826855 56019 + protein coding gene methyltransferase like 16
Tssr102909 11 74770881 to 74770907 26 + TSS region transcription start site region 102909
Tssr102910 11 74770908 to 74770920 12 + TSS region transcription start site region 102910