Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:73100421-73232685

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itgae 11 73090583 to 73147446 56863 + protein coding gene integrin alpha E, epithelial-associated
Tssr102878 11 73111747 to 73111790 43 + TSS region transcription start site region 102878
D11Jcs2 11 73119933 to 73120165 232 DNA segment DNA segment, Chr 11, John C. Schimenti 2
Tssr102879 11 73126754 to 73126777 23 + TSS region transcription start site region 102879
Haspin 11 73135485 to 73138294 2809 - protein coding gene histone H3 associated protein kinase
Tssr109105 11 73137278 to 73137291 13 - TSS region transcription start site region 109105
Tssr109106 11 73137297 to 73137341 44 - TSS region transcription start site region 109106
Cpgi3230 11 73137555 to 73138798 1243 CpG island CpG island 3230
Tssr109107 11 73137991 to 73138003 12 - TSS region transcription start site region 109107
Tssr109108 11 73138177 to 73138239 62 - TSS region transcription start site region 109108
Tssr109109 11 73138245 to 73138310 65 - TSS region transcription start site region 109109
Tssr102880 11 73138287 to 73138290 3 + TSS region transcription start site region 102880
Tssr102881 11 73138313 to 73138356 43 + TSS region transcription start site region 102881
Tssr102882 11 73138358 to 73138372 14 + TSS region transcription start site region 102882
Tssr102883 11 73138439 to 73138482 43 + TSS region transcription start site region 102883
Gm35001 11 73158198 to 73160185 1987 - lncRNA gene predicted gene, 35001
Cpgi3231 11 73160123 to 73160909 786 CpG island CpG island 3231
Tssr102884 11 73160308 to 73160341 33 + TSS region transcription start site region 102884
Tssr102885 11 73160382 to 73160395 13 + TSS region transcription start site region 102885
Tssr102886 11 73160403 to 73160420 17 + TSS region transcription start site region 102886
P2rx5 11 73160421 to 73172685 12264 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 5
Emc6 11 73175519 to 73177037 1518 - protein coding gene ER membrane protein complex subunit 6
Cpgi3232 11 73176391 to 73177880 1489 CpG island CpG island 3232
Tssr102887 11 73176478 to 73176501 23 + TSS region transcription start site region 102887
Tssr109110 11 73176542 to 73176593 51 - TSS region transcription start site region 109110
Tssr109111 11 73176984 to 73176999 15 - TSS region transcription start site region 109111
Tssr109112 11 73177011 to 73177047 36 - TSS region transcription start site region 109112
Tax1bp3 11 73177083 to 73182046 4963 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 3
Tssr102888 11 73177200 to 73177235 35 + TSS region transcription start site region 102888
Tssr102889 11 73177236 to 73177261 25 + TSS region transcription start site region 102889
Ctns 11 73183596 to 73199042 15446 - protein coding gene cystinosis, nephropathic
Tssr109113 11 73196752 to 73196767 15 - TSS region transcription start site region 109113
Tssr109114 11 73198986 to 73199008 22 - TSS region transcription start site region 109114
Tssr109115 11 73199013 to 73199056 43 - TSS region transcription start site region 109115
Cpgi3233 11 73199155 to 73200037 882 CpG island CpG island 3233
Tssr102890 11 73199445 to 73199500 55 + TSS region transcription start site region 102890
Shpk 11 73199460 to 73224511 25051 + protein coding gene sedoheptulokinase
Tssr102891 11 73213391 to 73213399 8 + TSS region transcription start site region 102891
Gm16021 11 73226048 to 73226266 218 - pseudogene predicted gene 16021