Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72891472-73761478

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zzef1 11 72796226 to 72927120 130894 + protein coding gene zinc finger, ZZ-type with EF hand domain 1
Gm34704 11 72931334 to 72940554 9220 - lncRNA gene predicted gene, 34704
Gm34793 11 72946569 to 72948743 2174 + lncRNA gene predicted gene, 34793
Tssr102860 11 72946586 to 72946601 15 + TSS region transcription start site region 102860
Gm44467 11 72953107 to 72953196 89 + miRNA gene predicted gene, 44467
Tssr102861 11 72960288 to 72960295 7 + TSS region transcription start site region 102861
Cpgi3227 11 72960758 to 72961902 1144 CpG island CpG island 3227
Tssr102862 11 72961163 to 72961179 16 + TSS region transcription start site region 102862
Atp2a3 11 72961169 to 72993043 31874 + protein coding gene ATPase, Ca++ transporting, ubiquitous
Tssr102863 11 72961180 to 72961228 48 + TSS region transcription start site region 102863
Tssr102864 11 72991967 to 72991979 12 + TSS region transcription start site region 102864
Tssr102865 11 72992638 to 72992649 11 + TSS region transcription start site region 102865
Tssr102866 11 72992681 to 72992694 13 + TSS region transcription start site region 102866
Tssr102867 11 72997013 to 72997014 1 + TSS region transcription start site region 102867
Tssr102868 11 72999069 to 72999092 23 + TSS region transcription start site region 102868
P2rx1 11 72999103 to 73015200 16097 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 1
Tssr102869 11 72999128 to 72999137 9 + TSS region transcription start site region 102869
Tssr102870 11 73009104 to 73009117 13 + TSS region transcription start site region 102870
Tssr102871 11 73009680 to 73009691 11 + TSS region transcription start site region 102871
Tssr102872 11 73009720 to 73009737 17 + TSS region transcription start site region 102872
Tssr102873 11 73009749 to 73009798 49 + TSS region transcription start site region 102873
Tssr102874 11 73009800 to 73009820 20 + TSS region transcription start site region 102874
4732414G09Rik 11 73015856 to 73018841 2985 - lincRNA gene RIKEN cDNA 4732414G09 gene
Cpgi3228 11 73018495 to 73019895 1400 CpG island CpG island 3228
Tssr102875 11 73018986 to 73019047 61 + TSS region transcription start site region 102875
Camkk1 11 73019008 to 73042073 23065 + protein coding gene calcium/calmodulin-dependent protein kinase kinase 1, alpha
Cpgi3229 11 73047662 to 73048679 1017 CpG island CpG island 3229
Tssr102876 11 73047854 to 73047902 48 + TSS region transcription start site region 102876
Ncbp3 11 73047867 to 73083579 35712 + protein coding gene nuclear cap binding subunit 3
Tssr3573 11 73085289 to 73085297 8 + TSS region transcription start site region 3573
Tssr102877 11 73090554 to 73090603 49 + TSS region transcription start site region 102877
Itgae 11 73090583 to 73147446 56863 + protein coding gene integrin alpha E, epithelial-associated
Tssr109104 11 73094324 to 73094342 18 - TSS region transcription start site region 109104
Tssr102878 11 73111747 to 73111790 43 + TSS region transcription start site region 102878
D11Jcs2 11 73119933 to 73120165 232 DNA segment DNA segment, Chr 11, John C. Schimenti 2
Tssr102879 11 73126754 to 73126777 23 + TSS region transcription start site region 102879
Haspin 11 73135485 to 73138294 2809 - protein coding gene histone H3 associated protein kinase
Tssr109105 11 73137278 to 73137291 13 - TSS region transcription start site region 109105
Tssr109106 11 73137297 to 73137341 44 - TSS region transcription start site region 109106
Cpgi3230 11 73137555 to 73138798 1243 CpG island CpG island 3230
Tssr109107 11 73137991 to 73138003 12 - TSS region transcription start site region 109107
Tssr109108 11 73138177 to 73138239 62 - TSS region transcription start site region 109108
Tssr109109 11 73138245 to 73138310 65 - TSS region transcription start site region 109109
Tssr102880 11 73138287 to 73138290 3 + TSS region transcription start site region 102880
Tssr102881 11 73138313 to 73138356 43 + TSS region transcription start site region 102881
Tssr102882 11 73138358 to 73138372 14 + TSS region transcription start site region 102882
Tssr102883 11 73138439 to 73138482 43 + TSS region transcription start site region 102883
Gm35001 11 73158198 to 73160185 1987 - lncRNA gene predicted gene, 35001
Cpgi3231 11 73160123 to 73160909 786 CpG island CpG island 3231
Tssr102884 11 73160308 to 73160341 33 + TSS region transcription start site region 102884
Tssr102885 11 73160382 to 73160395 13 + TSS region transcription start site region 102885
Tssr102886 11 73160403 to 73160420 17 + TSS region transcription start site region 102886
P2rx5 11 73160421 to 73172685 12264 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 5
Emc6 11 73175519 to 73177037 1518 - protein coding gene ER membrane protein complex subunit 6
Cpgi3232 11 73176391 to 73177880 1489 CpG island CpG island 3232
Tssr102887 11 73176478 to 73176501 23 + TSS region transcription start site region 102887
Tssr109110 11 73176542 to 73176593 51 - TSS region transcription start site region 109110
Tssr109111 11 73176984 to 73176999 15 - TSS region transcription start site region 109111
Tssr109112 11 73177011 to 73177047 36 - TSS region transcription start site region 109112
Tax1bp3 11 73177083 to 73182046 4963 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 3
Tssr102888 11 73177200 to 73177235 35 + TSS region transcription start site region 102888
Tssr102889 11 73177236 to 73177261 25 + TSS region transcription start site region 102889
Ctns 11 73183596 to 73199042 15446 - protein coding gene cystinosis, nephropathic
Tssr109113 11 73196752 to 73196767 15 - TSS region transcription start site region 109113
Tssr109114 11 73198986 to 73199008 22 - TSS region transcription start site region 109114
Tssr109115 11 73199013 to 73199056 43 - TSS region transcription start site region 109115
Cpgi3233 11 73199155 to 73200037 882 CpG island CpG island 3233
Tssr102890 11 73199445 to 73199500 55 + TSS region transcription start site region 102890
Shpk 11 73199460 to 73224511 25051 + protein coding gene sedoheptulokinase
Tssr102891 11 73213391 to 73213399 8 + TSS region transcription start site region 102891
Gm16021 11 73226048 to 73226266 218 - pseudogene predicted gene 16021
Trpv1 11 73234292 to 73261242 26950 + protein coding gene transient receptor potential cation channel, subfamily V, member 1
Trpv3 11 73267489 to 73300368 32879 + protein coding gene transient receptor potential cation channel, subfamily V, member 3
Tssr102892 11 73267499 to 73267539 40 + TSS region transcription start site region 102892
Cpgi3234 11 73278873 to 73279064 191 CpG island CpG island 3234
Cpgi3235 11 73279672 to 73279898 226 CpG island CpG island 3235
Tssr102893 11 73279757 to 73279791 34 + TSS region transcription start site region 102893
Cpgi3236 11 73281577 to 73281957 380 CpG island CpG island 3236
D11Jcs3 11 73297949 to 73298190 241 DNA segment DNA segment, Chr 11, John C. Schimenti 3
Aspa 11 73304987 to 73326867 21880 - protein coding gene aspartoacylase
Tssr109116 11 73324616 to 73324641 25 - TSS region transcription start site region 109116
Tssr109117 11 73326472 to 73326478 6 - TSS region transcription start site region 109117
Tssr102894 11 73326576 to 73326621 45 + TSS region transcription start site region 102894
Tssr109118 11 73326812 to 73326851 39 - TSS region transcription start site region 109118
Cpgi3237 11 73329487 to 73329817 330 CpG island CpG island 3237
Tssr102895 11 73329727 to 73329748 21 + TSS region transcription start site region 102895
Gm49340 11 73329741 to 73355913 26172 + protein coding gene predicted gene, 49340
Spata22 11 73329741 to 73346044 16303 + protein coding gene spermatogenesis associated 22
Olfr20 11 73350859 to 73354699 3840 + protein coding gene olfactory receptor 20
Olfr376 11 73371246 to 73375704 4458 + protein coding gene olfactory receptor 376
Olfr377-ps1 11 73388084 to 73389024 940 - polymorphic pseudogene olfactory receptor 377, pseudogene 1
D11Mit194 11 73389313 to 73389442 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 194
Tssr102896 11 73389821 to 73389831 10 + TSS region transcription start site region 102896
Gm17811 11 73389934 to 73390320 386 + pseudogene predicted gene, 17811
Tssr102897 11 73390099 to 73390101 2 + TSS region transcription start site region 102897
Olfr1 11 73395076 to 73399495 4419 - protein coding gene olfactory receptor 1
Olfr75-ps1 11 73405450 to 73409858 4408 - pseudogene olfactory receptor 75, pseudogene 1
Gm44922 11 73413319 to 73413408 89 - pseudogene predicted gene 44922
Olfr378 11 73425037 to 73428477 3440 - protein coding gene olfactory receptor 378
Olfr379-ps1 11 73433291 to 73434224 933 - polymorphic pseudogene olfactory receptor 379, pseudogene 1
Olfr380 11 73453275 to 73454210 935 - protein coding gene olfactory receptor 380
Gm44923 11 73483774 to 73483858 84 - pseudogene predicted gene 44923
Olfr381 11 73485887 to 73486822 935 - protein coding gene olfactory receptor 381
Olfr382 11 73516259 to 73517197 938 - protein coding gene olfactory receptor 382
Olfr383-ps1 11 73540452 to 73541353 901 - pseudogene olfactory receptor 383, pseudogene 1
Olfr385 11 73588798 to 73589736 938 - protein coding gene olfactory receptor 385
Olfr384 11 73602582 to 73603520 938 + protein coding gene olfactory receptor 384
Gm12327 11 73641786 to 73645155 3369 + pseudogene predicted gene 12327
Tssr102898 11 73663002 to 73663005 3 + TSS region transcription start site region 102898
Olfr387-ps1 11 73664607 to 73665540 933 + polymorphic pseudogene olfactory receptor 387, pseudogene 1
Zfp735 11 73688778 to 73713798 25020 + protein coding gene zinc finger protein 735
Gm44665 11 73718203 to 73718761 558 + pseudogene predicted gene 44665
Olfr388-ps1 11 73724085 to 73725022 937 - polymorphic pseudogene olfactory receptor 388, pseudogene 1
Gm22381 11 73756037 to 73756143 106 + snRNA gene predicted gene, 22381