Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72810758-73111902

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zzef1 11 72796226 to 72927120 130894 + protein coding gene zinc finger, ZZ-type with EF hand domain 1
Gm6733 11 72833461 to 72835380 1919 + pseudogene predicted gene 6733
Tssr102859 11 72881791 to 72881792 1 + TSS region transcription start site region 102859
Gm26121 11 72881792 to 72881953 161 + snRNA gene predicted gene, 26121
Gm34704 11 72931334 to 72940554 9220 - lncRNA gene predicted gene, 34704
Gm34793 11 72946569 to 72948743 2174 + lncRNA gene predicted gene, 34793
Tssr102860 11 72946586 to 72946601 15 + TSS region transcription start site region 102860
Gm44467 11 72953107 to 72953196 89 + miRNA gene predicted gene, 44467
Tssr102861 11 72960288 to 72960295 7 + TSS region transcription start site region 102861
Cpgi3227 11 72960758 to 72961902 1144 CpG island CpG island 3227
Tssr102862 11 72961163 to 72961179 16 + TSS region transcription start site region 102862
Atp2a3 11 72961169 to 72993043 31874 + protein coding gene ATPase, Ca++ transporting, ubiquitous
Tssr102863 11 72961180 to 72961228 48 + TSS region transcription start site region 102863
Tssr102864 11 72991967 to 72991979 12 + TSS region transcription start site region 102864
Tssr102865 11 72992638 to 72992649 11 + TSS region transcription start site region 102865
Tssr102866 11 72992681 to 72992694 13 + TSS region transcription start site region 102866
Tssr102867 11 72997013 to 72997014 1 + TSS region transcription start site region 102867
Tssr102868 11 72999069 to 72999092 23 + TSS region transcription start site region 102868
P2rx1 11 72999103 to 73015200 16097 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 1
Tssr102869 11 72999128 to 72999137 9 + TSS region transcription start site region 102869
Tssr102870 11 73009104 to 73009117 13 + TSS region transcription start site region 102870
Tssr102871 11 73009680 to 73009691 11 + TSS region transcription start site region 102871
Tssr102872 11 73009720 to 73009737 17 + TSS region transcription start site region 102872
Tssr102873 11 73009749 to 73009798 49 + TSS region transcription start site region 102873
Tssr102874 11 73009800 to 73009820 20 + TSS region transcription start site region 102874
4732414G09Rik 11 73015856 to 73018841 2985 - lincRNA gene RIKEN cDNA 4732414G09 gene
Cpgi3228 11 73018495 to 73019895 1400 CpG island CpG island 3228
Tssr102875 11 73018986 to 73019047 61 + TSS region transcription start site region 102875
Camkk1 11 73019008 to 73042073 23065 + protein coding gene calcium/calmodulin-dependent protein kinase kinase 1, alpha
Cpgi3229 11 73047662 to 73048679 1017 CpG island CpG island 3229
Tssr102876 11 73047854 to 73047902 48 + TSS region transcription start site region 102876
Ncbp3 11 73047867 to 73083579 35712 + protein coding gene nuclear cap binding subunit 3
Tssr3573 11 73085289 to 73085297 8 + TSS region transcription start site region 3573
Tssr102877 11 73090554 to 73090603 49 + TSS region transcription start site region 102877
Itgae 11 73090583 to 73147446 56863 + protein coding gene integrin alpha E, epithelial-associated
Tssr109104 11 73094324 to 73094342 18 - TSS region transcription start site region 109104
Tssr102878 11 73111747 to 73111790 43 + TSS region transcription start site region 102878