Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72496164-73096246

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spns3 11 72498153 to 72550509 52356 - protein coding gene spinster homolog 3
Tssr109092 11 72502409 to 72502427 18 - TSS region transcription start site region 109092
Tssr109093 11 72502436 to 72502451 15 - TSS region transcription start site region 109093
Tssr3572 11 72540551 to 72540558 7 - TSS region transcription start site region 3572
Tssr109094 11 72550195 to 72550206 11 - TSS region transcription start site region 109094
Tssr109095 11 72550230 to 72550244 14 - TSS region transcription start site region 109095
Tssr109096 11 72550255 to 72550264 9 - TSS region transcription start site region 109096
Cpgi3223 11 72570576 to 72570850 274 CpG island CpG island 3223
Gm12712 11 72572530 to 72573330 800 - pseudogene predicted gene 12712
Cpgi3224 11 72606809 to 72608673 1864 CpG island CpG island 3224
Tssr109097 11 72607075 to 72607089 14 - TSS region transcription start site region 109097
Tssr102848 11 72607221 to 72607307 86 + TSS region transcription start site region 102848
Ube2g1 11 72607283 to 72686481 79198 + protein coding gene ubiquitin-conjugating enzyme E2G 1
Tssr102849 11 72607313 to 72607324 11 + TSS region transcription start site region 102849
Tssr102850 11 72607363 to 72607435 72 + TSS region transcription start site region 102850
Tssr109098 11 72607757 to 72607805 48 - TSS region transcription start site region 109098
Tssr109099 11 72608448 to 72608475 27 - TSS region transcription start site region 109099
Gm24143 11 72616006 to 72616150 144 - snoRNA gene predicted gene, 24143
Gm25678 11 72648925 to 72648997 72 + miRNA gene predicted gene, 25678
D11Jcs1 11 72663389 to 72663560 171 DNA segment DNA segment, Chr 11, John C. Schimenti 1
Tssr102851 11 72671205 to 72671208 3 + TSS region transcription start site region 102851
Cpgi3225 11 72689728 to 72690542 814 CpG island CpG island 3225
Tssr102852 11 72689983 to 72689994 11 + TSS region transcription start site region 102852
Tssr102853 11 72689997 to 72690015 18 + TSS region transcription start site region 102853
Ankfy1 11 72690006 to 72772146 82140 + protein coding gene ankyrin repeat and FYVE domain containing 1
Tssr102854 11 72699157 to 72699159 2 + TSS region transcription start site region 102854
Tssr102855 11 72713725 to 72713736 11 + TSS region transcription start site region 102855
Tssr102856 11 72742313 to 72742318 5 + TSS region transcription start site region 102856
Gm46287 11 72764874 to 72767506 2632 + lncRNA gene predicted gene, 46287
Cyb5d2 11 72777232 to 72795839 18607 - protein coding gene cytochrome b5 domain containing 2
Cpgi3226 11 72795244 to 72796881 1637 CpG island CpG island 3226
Tssr109100 11 72795801 to 72795847 46 - TSS region transcription start site region 109100
Tssr109101 11 72796028 to 72796074 46 - TSS region transcription start site region 109101
Tssr102857 11 72796164 to 72796246 82 + TSS region transcription start site region 102857
Zzef1 11 72796226 to 72927120 130894 + protein coding gene zinc finger, ZZ-type with EF hand domain 1
Tssr102858 11 72796257 to 72796268 11 + TSS region transcription start site region 102858
Tssr109102 11 72796757 to 72796766 9 - TSS region transcription start site region 109102
Tssr109103 11 72796946 to 72796989 43 - TSS region transcription start site region 109103
Gm22075 11 72800287 to 72800478 191 - unclassified non-coding RNA gene predicted gene, 22075
Gm6733 11 72833461 to 72835380 1919 + pseudogene predicted gene 6733
Tssr102859 11 72881791 to 72881792 1 + TSS region transcription start site region 102859
Gm26121 11 72881792 to 72881953 161 + snRNA gene predicted gene, 26121
Gm34704 11 72931334 to 72940554 9220 - lncRNA gene predicted gene, 34704
Gm34793 11 72946569 to 72948743 2174 + lncRNA gene predicted gene, 34793
Tssr102860 11 72946586 to 72946601 15 + TSS region transcription start site region 102860
Gm44467 11 72953107 to 72953196 89 + miRNA gene predicted gene, 44467
Tssr102861 11 72960288 to 72960295 7 + TSS region transcription start site region 102861
Cpgi3227 11 72960758 to 72961902 1144 CpG island CpG island 3227
Tssr102862 11 72961163 to 72961179 16 + TSS region transcription start site region 102862
Atp2a3 11 72961169 to 72993043 31874 + protein coding gene ATPase, Ca++ transporting, ubiquitous
Tssr102863 11 72961180 to 72961228 48 + TSS region transcription start site region 102863
Tssr102864 11 72991967 to 72991979 12 + TSS region transcription start site region 102864
Tssr102865 11 72992638 to 72992649 11 + TSS region transcription start site region 102865
Tssr102866 11 72992681 to 72992694 13 + TSS region transcription start site region 102866
Tssr102867 11 72997013 to 72997014 1 + TSS region transcription start site region 102867
Tssr102868 11 72999069 to 72999092 23 + TSS region transcription start site region 102868
P2rx1 11 72999103 to 73015200 16097 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 1
Tssr102869 11 72999128 to 72999137 9 + TSS region transcription start site region 102869
Tssr102870 11 73009104 to 73009117 13 + TSS region transcription start site region 102870
Tssr102871 11 73009680 to 73009691 11 + TSS region transcription start site region 102871
Tssr102872 11 73009720 to 73009737 17 + TSS region transcription start site region 102872
Tssr102873 11 73009749 to 73009798 49 + TSS region transcription start site region 102873
Tssr102874 11 73009800 to 73009820 20 + TSS region transcription start site region 102874
4732414G09Rik 11 73015856 to 73018841 2985 - lincRNA gene RIKEN cDNA 4732414G09 gene
Cpgi3228 11 73018495 to 73019895 1400 CpG island CpG island 3228
Tssr102875 11 73018986 to 73019047 61 + TSS region transcription start site region 102875
Camkk1 11 73019008 to 73042073 23065 + protein coding gene calcium/calmodulin-dependent protein kinase kinase 1, alpha
Cpgi3229 11 73047662 to 73048679 1017 CpG island CpG island 3229
Tssr102876 11 73047854 to 73047902 48 + TSS region transcription start site region 102876
Ncbp3 11 73047867 to 73083579 35712 + protein coding gene nuclear cap binding subunit 3
Tssr3573 11 73085289 to 73085297 8 + TSS region transcription start site region 3573
Tssr102877 11 73090554 to 73090603 49 + TSS region transcription start site region 102877
Itgae 11 73090583 to 73147446 56863 + protein coding gene integrin alpha E, epithelial-associated
Tssr109104 11 73094324 to 73094342 18 - TSS region transcription start site region 109104