Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72381164-73211246

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mir6338 11 72388756 to 72388864 108 + miRNA gene microRNA 6338
Smtnl2 11 72389164 to 72411713 22549 - protein coding gene smoothelin-like 2
Tssr109084 11 72410307 to 72410320 13 - TSS region transcription start site region 109084
Cpgi3220 11 72410608 to 72412016 1408 CpG island CpG island 3220
Tssr109085 11 72411695 to 72411718 23 - TSS region transcription start site region 109085
Tssr109086 11 72411721 to 72411733 12 - TSS region transcription start site region 109086
Tssr102839 11 72435234 to 72435302 68 + TSS region transcription start site region 102839
Tssr102840 11 72435511 to 72435529 18 + TSS region transcription start site region 102840
Ggt6 11 72435526 to 72438400 2874 + protein coding gene gamma-glutamyltransferase 6
Tssr102841 11 72435536 to 72435558 22 + TSS region transcription start site region 102841
Tssr102842 11 72435565 to 72435578 13 + TSS region transcription start site region 102842
Tssr102843 11 72438651 to 72438689 38 + TSS region transcription start site region 102843
Cpgi3221 11 72440976 to 72441888 912 CpG island CpG island 3221
Tssr109087 11 72441219 to 72441276 57 - TSS region transcription start site region 109087
Tssr102844 11 72441341 to 72441386 45 + TSS region transcription start site region 102844
Mybbp1a 11 72441378 to 72451550 10172 + protein coding gene MYB binding protein (P160) 1a
Tssr102845 11 72450703 to 72450707 4 + TSS region transcription start site region 102845
Tssr102846 11 72451158 to 72451178 20 + TSS region transcription start site region 102846
Spns2 11 72451638 to 72489904 38266 - protein coding gene spinster homolog 2
Tssr109088 11 72454439 to 72454474 35 - TSS region transcription start site region 109088
Gm40194 11 72457917 to 72461817 3900 + lncRNA gene predicted gene, 40194
Tssr102847 11 72458155 to 72458171 16 + TSS region transcription start site region 102847
Tssr109089 11 72475008 to 72475032 24 - TSS region transcription start site region 109089
Tssr109090 11 72475042 to 72475070 28 - TSS region transcription start site region 109090
Cpgi3222 11 72488719 to 72490596 1877 CpG island CpG island 3222
Tssr109091 11 72489953 to 72489979 26 - TSS region transcription start site region 109091
Spns3 11 72498153 to 72550509 52356 - protein coding gene spinster homolog 3
Tssr109092 11 72502409 to 72502427 18 - TSS region transcription start site region 109092
Tssr109093 11 72502436 to 72502451 15 - TSS region transcription start site region 109093
Tssr3572 11 72540551 to 72540558 7 - TSS region transcription start site region 3572
Tssr109094 11 72550195 to 72550206 11 - TSS region transcription start site region 109094
Tssr109095 11 72550230 to 72550244 14 - TSS region transcription start site region 109095
Tssr109096 11 72550255 to 72550264 9 - TSS region transcription start site region 109096
Cpgi3223 11 72570576 to 72570850 274 CpG island CpG island 3223
Gm12712 11 72572530 to 72573330 800 - pseudogene predicted gene 12712
Cpgi3224 11 72606809 to 72608673 1864 CpG island CpG island 3224
Tssr109097 11 72607075 to 72607089 14 - TSS region transcription start site region 109097
Tssr102848 11 72607221 to 72607307 86 + TSS region transcription start site region 102848
Ube2g1 11 72607283 to 72686481 79198 + protein coding gene ubiquitin-conjugating enzyme E2G 1
Tssr102849 11 72607313 to 72607324 11 + TSS region transcription start site region 102849
Tssr102850 11 72607363 to 72607435 72 + TSS region transcription start site region 102850
Tssr109098 11 72607757 to 72607805 48 - TSS region transcription start site region 109098
Tssr109099 11 72608448 to 72608475 27 - TSS region transcription start site region 109099
Gm24143 11 72616006 to 72616150 144 - snoRNA gene predicted gene, 24143
Gm25678 11 72648925 to 72648997 72 + miRNA gene predicted gene, 25678
D11Jcs1 11 72663389 to 72663560 171 DNA segment DNA segment, Chr 11, John C. Schimenti 1
Tssr102851 11 72671205 to 72671208 3 + TSS region transcription start site region 102851
Cpgi3225 11 72689728 to 72690542 814 CpG island CpG island 3225
Tssr102852 11 72689983 to 72689994 11 + TSS region transcription start site region 102852
Tssr102853 11 72689997 to 72690015 18 + TSS region transcription start site region 102853
Ankfy1 11 72690006 to 72772146 82140 + protein coding gene ankyrin repeat and FYVE domain containing 1
Tssr102854 11 72699157 to 72699159 2 + TSS region transcription start site region 102854
Tssr102855 11 72713725 to 72713736 11 + TSS region transcription start site region 102855
Tssr102856 11 72742313 to 72742318 5 + TSS region transcription start site region 102856
Gm46287 11 72764874 to 72767506 2632 + lncRNA gene predicted gene, 46287
Cyb5d2 11 72777232 to 72795839 18607 - protein coding gene cytochrome b5 domain containing 2
Cpgi3226 11 72795244 to 72796881 1637 CpG island CpG island 3226
Tssr109100 11 72795801 to 72795847 46 - TSS region transcription start site region 109100
Tssr109101 11 72796028 to 72796074 46 - TSS region transcription start site region 109101
Tssr102857 11 72796164 to 72796246 82 + TSS region transcription start site region 102857
Zzef1 11 72796226 to 72927120 130894 + protein coding gene zinc finger, ZZ-type with EF hand domain 1
Tssr102858 11 72796257 to 72796268 11 + TSS region transcription start site region 102858
Tssr109102 11 72796757 to 72796766 9 - TSS region transcription start site region 109102
Tssr109103 11 72796946 to 72796989 43 - TSS region transcription start site region 109103
Gm22075 11 72800287 to 72800478 191 - unclassified non-coding RNA gene predicted gene, 22075
Gm6733 11 72833461 to 72835380 1919 + pseudogene predicted gene 6733
Tssr102859 11 72881791 to 72881792 1 + TSS region transcription start site region 102859
Gm26121 11 72881792 to 72881953 161 + snRNA gene predicted gene, 26121
Gm34704 11 72931334 to 72940554 9220 - lncRNA gene predicted gene, 34704
Gm34793 11 72946569 to 72948743 2174 + lncRNA gene predicted gene, 34793
Tssr102860 11 72946586 to 72946601 15 + TSS region transcription start site region 102860
Gm44467 11 72953107 to 72953196 89 + miRNA gene predicted gene, 44467
Tssr102861 11 72960288 to 72960295 7 + TSS region transcription start site region 102861
Cpgi3227 11 72960758 to 72961902 1144 CpG island CpG island 3227
Tssr102862 11 72961163 to 72961179 16 + TSS region transcription start site region 102862
Atp2a3 11 72961169 to 72993043 31874 + protein coding gene ATPase, Ca++ transporting, ubiquitous
Tssr102863 11 72961180 to 72961228 48 + TSS region transcription start site region 102863
Tssr102864 11 72991967 to 72991979 12 + TSS region transcription start site region 102864
Tssr102865 11 72992638 to 72992649 11 + TSS region transcription start site region 102865
Tssr102866 11 72992681 to 72992694 13 + TSS region transcription start site region 102866
Tssr102867 11 72997013 to 72997014 1 + TSS region transcription start site region 102867
Tssr102868 11 72999069 to 72999092 23 + TSS region transcription start site region 102868
P2rx1 11 72999103 to 73015200 16097 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 1
Tssr102869 11 72999128 to 72999137 9 + TSS region transcription start site region 102869
Tssr102870 11 73009104 to 73009117 13 + TSS region transcription start site region 102870
Tssr102871 11 73009680 to 73009691 11 + TSS region transcription start site region 102871
Tssr102872 11 73009720 to 73009737 17 + TSS region transcription start site region 102872
Tssr102873 11 73009749 to 73009798 49 + TSS region transcription start site region 102873
Tssr102874 11 73009800 to 73009820 20 + TSS region transcription start site region 102874
4732414G09Rik 11 73015856 to 73018841 2985 - lincRNA gene RIKEN cDNA 4732414G09 gene
Cpgi3228 11 73018495 to 73019895 1400 CpG island CpG island 3228
Tssr102875 11 73018986 to 73019047 61 + TSS region transcription start site region 102875
Camkk1 11 73019008 to 73042073 23065 + protein coding gene calcium/calmodulin-dependent protein kinase kinase 1, alpha
Cpgi3229 11 73047662 to 73048679 1017 CpG island CpG island 3229
Tssr102876 11 73047854 to 73047902 48 + TSS region transcription start site region 102876
Ncbp3 11 73047867 to 73083579 35712 + protein coding gene nuclear cap binding subunit 3
Tssr3573 11 73085289 to 73085297 8 + TSS region transcription start site region 3573
Tssr102877 11 73090554 to 73090603 49 + TSS region transcription start site region 102877
Itgae 11 73090583 to 73147446 56863 + protein coding gene integrin alpha E, epithelial-associated
Tssr109104 11 73094324 to 73094342 18 - TSS region transcription start site region 109104
Tssr102878 11 73111747 to 73111790 43 + TSS region transcription start site region 102878
D11Jcs2 11 73119933 to 73120165 232 DNA segment DNA segment, Chr 11, John C. Schimenti 2
Tssr102879 11 73126754 to 73126777 23 + TSS region transcription start site region 102879
Haspin 11 73135485 to 73138294 2809 - protein coding gene histone H3 associated protein kinase
Tssr109105 11 73137278 to 73137291 13 - TSS region transcription start site region 109105
Tssr109106 11 73137297 to 73137341 44 - TSS region transcription start site region 109106
Cpgi3230 11 73137555 to 73138798 1243 CpG island CpG island 3230
Tssr109107 11 73137991 to 73138003 12 - TSS region transcription start site region 109107
Tssr109108 11 73138177 to 73138239 62 - TSS region transcription start site region 109108
Tssr109109 11 73138245 to 73138310 65 - TSS region transcription start site region 109109
Tssr102880 11 73138287 to 73138290 3 + TSS region transcription start site region 102880
Tssr102881 11 73138313 to 73138356 43 + TSS region transcription start site region 102881
Tssr102882 11 73138358 to 73138372 14 + TSS region transcription start site region 102882
Tssr102883 11 73138439 to 73138482 43 + TSS region transcription start site region 102883
Gm35001 11 73158198 to 73160185 1987 - lncRNA gene predicted gene, 35001
Cpgi3231 11 73160123 to 73160909 786 CpG island CpG island 3231
Tssr102884 11 73160308 to 73160341 33 + TSS region transcription start site region 102884
Tssr102885 11 73160382 to 73160395 13 + TSS region transcription start site region 102885
Tssr102886 11 73160403 to 73160420 17 + TSS region transcription start site region 102886
P2rx5 11 73160421 to 73172685 12264 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 5
Emc6 11 73175519 to 73177037 1518 - protein coding gene ER membrane protein complex subunit 6
Cpgi3232 11 73176391 to 73177880 1489 CpG island CpG island 3232
Tssr102887 11 73176478 to 73176501 23 + TSS region transcription start site region 102887
Tssr109110 11 73176542 to 73176593 51 - TSS region transcription start site region 109110
Tssr109111 11 73176984 to 73176999 15 - TSS region transcription start site region 109111
Tssr109112 11 73177011 to 73177047 36 - TSS region transcription start site region 109112
Tax1bp3 11 73177083 to 73182046 4963 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 3
Tssr102888 11 73177200 to 73177235 35 + TSS region transcription start site region 102888
Tssr102889 11 73177236 to 73177261 25 + TSS region transcription start site region 102889
Ctns 11 73183596 to 73199042 15446 - protein coding gene cystinosis, nephropathic
Tssr109113 11 73196752 to 73196767 15 - TSS region transcription start site region 109113
Tssr109114 11 73198986 to 73199008 22 - TSS region transcription start site region 109114
Tssr109115 11 73199013 to 73199056 43 - TSS region transcription start site region 109115
Cpgi3233 11 73199155 to 73200037 882 CpG island CpG island 3233
Tssr102890 11 73199445 to 73199500 55 + TSS region transcription start site region 102890
Shpk 11 73199460 to 73224511 25051 + protein coding gene sedoheptulokinase