Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72306727-72417350

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20 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Xaf1 11 72301629 to 72313733 12104 + protein coding gene XIAP associated factor 1
Tssr102836 11 72308608 to 72308629 21 + TSS region transcription start site region 102836
Cpgi3218 11 72314126 to 72314772 646 CpG island CpG island 3218
Tssr102837 11 72314438 to 72314455 17 + TSS region transcription start site region 102837
Fbxo39 11 72314444 to 72319416 4972 + protein coding gene F-box protein 39
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
D11Mit219 11 72318970 to 72319101 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 219
Gm23224 11 72340370 to 72340640 270 + unclassified non-coding RNA gene predicted gene, 23224
Tekt1 11 72344722 to 72362442 17720 - protein coding gene tektin 1
Cpgi3219 11 72361727 to 72362350 623 CpG island CpG island 3219
Tssr109083 11 72361837 to 72361899 62 - TSS region transcription start site region 109083
Tssr102838 11 72361911 to 72361926 15 + TSS region transcription start site region 102838
Gm34317 11 72361928 to 72370855 8927 + lncRNA gene predicted gene, 34317
Mir6338 11 72388756 to 72388864 108 + miRNA gene microRNA 6338
Smtnl2 11 72389164 to 72411713 22549 - protein coding gene smoothelin-like 2
Tssr109084 11 72410307 to 72410320 13 - TSS region transcription start site region 109084
Cpgi3220 11 72410608 to 72412016 1408 CpG island CpG island 3220
Tssr109085 11 72411695 to 72411718 23 - TSS region transcription start site region 109085
Tssr109086 11 72411721 to 72411733 12 - TSS region transcription start site region 109086