Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:72244722-72462442

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58 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Slc13a5 11 72241989 to 72267222 25233 - protein coding gene solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gm34252 11 72243818 to 72248076 4258 + lncRNA gene predicted gene, 34252
Cpgi3217 11 72266107 to 72267507 1400 CpG island CpG island 3217
Tssr102824 11 72266409 to 72266423 14 + TSS region transcription start site region 102824
Tssr102825 11 72266426 to 72266454 28 + TSS region transcription start site region 102825
Tssr102826 11 72266469 to 72266479 10 + TSS region transcription start site region 102826
Tssr109080 11 72266596 to 72266611 15 - TSS region transcription start site region 109080
Tssr109081 11 72266621 to 72266640 19 - TSS region transcription start site region 109081
1700051A21Rik 11 72266844 to 72268556 1712 + lncRNA gene RIKEN cDNA 1700051A21 gene
Tssr109082 11 72267141 to 72267164 23 - TSS region transcription start site region 109082
Tssr102827 11 72267240 to 72267247 7 + TSS region transcription start site region 102827
Tssr102828 11 72267251 to 72267267 16 + TSS region transcription start site region 102828
Tssr102829 11 72267268 to 72267273 5 + TSS region transcription start site region 102829
Tssr102830 11 72267274 to 72267300 26 + TSS region transcription start site region 102830
Tssr102831 11 72267302 to 72267320 18 + TSS region transcription start site region 102831
n-R5s70 11 72281016 to 72281131 115 + rRNA gene nuclear encoded rRNA 5S 70
4930511C11Rik 11 72281224 to 72281658 434 lncRNA gene RIKEN cDNA 4930511C11 gene
Tssr102832 11 72301613 to 72301671 58 + TSS region transcription start site region 102832
Xaf1 11 72301629 to 72313733 12104 + protein coding gene XIAP associated factor 1
Tssr102833 11 72305459 to 72305474 15 + TSS region transcription start site region 102833
Tssr102834 11 72305501 to 72305517 16 + TSS region transcription start site region 102834
Tssr102835 11 72306560 to 72306575 15 + TSS region transcription start site region 102835
Tssr102836 11 72308608 to 72308629 21 + TSS region transcription start site region 102836
Cpgi3218 11 72314126 to 72314772 646 CpG island CpG island 3218
Tssr102837 11 72314438 to 72314455 17 + TSS region transcription start site region 102837
Fbxo39 11 72314444 to 72319416 4972 + protein coding gene F-box protein 39
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
D11Mit219 11 72318970 to 72319101 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 219
Gm51867 11 72339670 to 72345590 5920 + lncRNA gene predicted gene, 51867
Gm23224 11 72340370 to 72340640 270 + unclassified non-coding RNA gene predicted gene, 23224
Tekt1 11 72344722 to 72362442 17720 - protein coding gene tektin 1
Cpgi3219 11 72361727 to 72362350 623 CpG island CpG island 3219
Tssr109083 11 72361837 to 72361899 62 - TSS region transcription start site region 109083
Tssr102838 11 72361911 to 72361926 15 + TSS region transcription start site region 102838
Gm34317 11 72361911 to 72370855 8944 + lncRNA gene predicted gene, 34317
Mir6338 11 72388756 to 72388864 108 + miRNA gene microRNA 6338
Smtnl2 11 72389164 to 72411713 22549 - protein coding gene smoothelin-like 2
Tssr109084 11 72410307 to 72410320 13 - TSS region transcription start site region 109084
Cpgi3220 11 72410608 to 72412016 1408 CpG island CpG island 3220
Tssr109085 11 72411695 to 72411718 23 - TSS region transcription start site region 109085
Tssr109086 11 72411721 to 72411733 12 - TSS region transcription start site region 109086
Tssr102839 11 72435234 to 72435302 68 + TSS region transcription start site region 102839
Tssr102840 11 72435511 to 72435529 18 + TSS region transcription start site region 102840
Ggt6 11 72435526 to 72438400 2874 + protein coding gene gamma-glutamyltransferase 6
Tssr102841 11 72435536 to 72435558 22 + TSS region transcription start site region 102841
Tssr102842 11 72435565 to 72435578 13 + TSS region transcription start site region 102842
Tssr102843 11 72438651 to 72438689 38 + TSS region transcription start site region 102843
Cpgi3221 11 72440976 to 72441888 912 CpG island CpG island 3221
Tssr109087 11 72441219 to 72441276 57 - TSS region transcription start site region 109087
Tssr102844 11 72441341 to 72441386 45 + TSS region transcription start site region 102844
Mybbp1a 11 72441355 to 72451768 10413 + protein coding gene MYB binding protein (P160) 1a
Tssr102845 11 72450703 to 72450707 4 + TSS region transcription start site region 102845
Tssr102846 11 72451158 to 72451178 20 + TSS region transcription start site region 102846
Spns2 11 72451638 to 72489904 38266 - protein coding gene spinster homolog 2
Tssr109088 11 72454439 to 72454474 35 - TSS region transcription start site region 109088
Gm40194 11 72457382 to 72461817 4435 + lncRNA gene predicted gene, 40194
Tssr102847 11 72458155 to 72458171 16 + TSS region transcription start site region 102847