Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72140459-72470474

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
4933427D14Rik 11 72154097 to 72207470 53373 - protein coding gene RIKEN cDNA 4933427D14 gene
Tssr109071 11 72170770 to 72170787 17 - TSS region transcription start site region 109071
Tssr109072 11 72170790 to 72170819 29 - TSS region transcription start site region 109072
Gm43951 11 72203952 to 72206840 2888 - protein coding gene predicted gene, 43951
Cpgi3215 11 72206300 to 72207901 1601 CpG island CpG island 3215
Tssr109073 11 72206996 to 72207011 15 - TSS region transcription start site region 109073
Tssr109074 11 72207213 to 72207279 66 - TSS region transcription start site region 109074
Tssr109075 11 72207413 to 72207488 75 - TSS region transcription start site region 109075
Tssr102820 11 72207521 to 72207532 11 + TSS region transcription start site region 102820
Tssr102821 11 72207537 to 72207620 83 + TSS region transcription start site region 102821
Txndc17 11 72207547 to 72210015 2468 + protein coding gene thioredoxin domain containing 17
Tssr102822 11 72208267 to 72208284 17 + TSS region transcription start site region 102822
Tssr102823 11 72208732 to 72208760 28 + TSS region transcription start site region 102823
Med31 11 72211724 to 72215592 3868 - protein coding gene mediator complex subunit 31
Cpgi3216 11 72214700 to 72215865 1165 CpG island CpG island 3216
Tssr109076 11 72214985 to 72215020 35 - TSS region transcription start site region 109076
Tssr109077 11 72215026 to 72215068 42 - TSS region transcription start site region 109077
Tssr109078 11 72215087 to 72215094 7 - TSS region transcription start site region 109078
4930563E22Rik 11 72215138 to 72218450 3312 + unclassified non-coding RNA gene RIKEN cDNA 4930563E22 gene
Tssr109079 11 72215177 to 72215218 41 - TSS region transcription start site region 109079
D11Mit364 11 72232789 to 72232904 115 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 364
Slc13a5 11 72241990 to 72267056 25066 - protein coding gene solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gm34252 11 72243645 to 72247660 4015 + lncRNA gene predicted gene, 34252
Cpgi3217 11 72266107 to 72267507 1400 CpG island CpG island 3217
Tssr102824 11 72266409 to 72266423 14 + TSS region transcription start site region 102824
Tssr102825 11 72266426 to 72266454 28 + TSS region transcription start site region 102825
Tssr102826 11 72266469 to 72266479 10 + TSS region transcription start site region 102826
Tssr109080 11 72266596 to 72266611 15 - TSS region transcription start site region 109080
Tssr109081 11 72266621 to 72266640 19 - TSS region transcription start site region 109081
1700051A21Rik 11 72266844 to 72268556 1712 + lncRNA gene RIKEN cDNA 1700051A21 gene
Tssr109082 11 72267141 to 72267164 23 - TSS region transcription start site region 109082
Tssr102827 11 72267240 to 72267247 7 + TSS region transcription start site region 102827
Tssr102828 11 72267251 to 72267267 16 + TSS region transcription start site region 102828
Tssr102829 11 72267268 to 72267273 5 + TSS region transcription start site region 102829
Tssr102830 11 72267274 to 72267300 26 + TSS region transcription start site region 102830
Tssr102831 11 72267302 to 72267320 18 + TSS region transcription start site region 102831
n-R5s70 11 72281016 to 72281131 115 + rRNA gene nuclear encoded rRNA 5S 70
4930511C11Rik 11 72281224 to 72281658 434 unclassified gene RIKEN cDNA 4930511C11 gene
Tssr102832 11 72301613 to 72301671 58 + TSS region transcription start site region 102832
Xaf1 11 72301629 to 72313733 12104 + protein coding gene XIAP associated factor 1
Tssr102833 11 72305459 to 72305474 15 + TSS region transcription start site region 102833
Tssr102834 11 72305501 to 72305517 16 + TSS region transcription start site region 102834
Tssr102835 11 72306560 to 72306575 15 + TSS region transcription start site region 102835
Tssr102836 11 72308608 to 72308629 21 + TSS region transcription start site region 102836
Cpgi3218 11 72314126 to 72314772 646 CpG island CpG island 3218
Tssr102837 11 72314438 to 72314455 17 + TSS region transcription start site region 102837
Fbxo39 11 72314444 to 72319416 4972 + protein coding gene F-box protein 39
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
D11Mit219 11 72318970 to 72319101 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 219
Gm23224 11 72340370 to 72340640 270 + unclassified non-coding RNA gene predicted gene, 23224
Tekt1 11 72344722 to 72362442 17720 - protein coding gene tektin 1
Cpgi3219 11 72361727 to 72362350 623 CpG island CpG island 3219
Tssr109083 11 72361837 to 72361899 62 - TSS region transcription start site region 109083
Tssr102838 11 72361911 to 72361926 15 + TSS region transcription start site region 102838
Gm34317 11 72361928 to 72370855 8927 + lncRNA gene predicted gene, 34317
Mir6338 11 72388756 to 72388864 108 + miRNA gene microRNA 6338
Smtnl2 11 72389164 to 72411713 22549 - protein coding gene smoothelin-like 2
Tssr109084 11 72410307 to 72410320 13 - TSS region transcription start site region 109084
Cpgi3220 11 72410608 to 72412016 1408 CpG island CpG island 3220
Tssr109085 11 72411695 to 72411718 23 - TSS region transcription start site region 109085
Tssr109086 11 72411721 to 72411733 12 - TSS region transcription start site region 109086
Tssr102839 11 72435234 to 72435302 68 + TSS region transcription start site region 102839
Tssr102840 11 72435511 to 72435529 18 + TSS region transcription start site region 102840
Ggt6 11 72435526 to 72438400 2874 + protein coding gene gamma-glutamyltransferase 6
Tssr102841 11 72435536 to 72435558 22 + TSS region transcription start site region 102841
Tssr102842 11 72435565 to 72435578 13 + TSS region transcription start site region 102842
Tssr102843 11 72438651 to 72438689 38 + TSS region transcription start site region 102843
Cpgi3221 11 72440976 to 72441888 912 CpG island CpG island 3221
Tssr109087 11 72441219 to 72441276 57 - TSS region transcription start site region 109087
Tssr102844 11 72441341 to 72441386 45 + TSS region transcription start site region 102844
Mybbp1a 11 72441378 to 72451550 10172 + protein coding gene MYB binding protein (P160) 1a
Tssr102845 11 72450703 to 72450707 4 + TSS region transcription start site region 102845
Tssr102846 11 72451158 to 72451178 20 + TSS region transcription start site region 102846
Spns2 11 72451638 to 72489904 38266 - protein coding gene spinster homolog 2
Tssr109088 11 72454439 to 72454474 35 - TSS region transcription start site region 109088
Gm40194 11 72457917 to 72461817 3900 + lncRNA gene predicted gene, 40194
Tssr102847 11 72458155 to 72458171 16 + TSS region transcription start site region 102847