Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:72010576-73130850

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Gm23226 11 72022755 to 72022857 102 + snRNA gene predicted gene, 23226
Aipl1 11 72027963 to 72037509 9546 - protein coding gene aryl hydrocarbon receptor-interacting protein-like 1
Cpgi3211 11 72029139 to 72029525 386 CpG island CpG island 3211
Tssr109063 11 72037452 to 72037459 7 - TSS region transcription start site region 109063
Tssr109064 11 72037474 to 72037495 21 - TSS region transcription start site region 109064
Tssr109065 11 72037503 to 72037512 9 - TSS region transcription start site region 109065
Tssr109066 11 72037513 to 72037525 12 - TSS region transcription start site region 109066
Tssr109067 11 72037551 to 72037558 7 - TSS region transcription start site region 109067
Cpgi3212 11 72041965 to 72043048 1083 CpG island CpG island 3212
Pimreg 11 72042427 to 72047372 4945 + protein coding gene PICALM interacting mitotic regulator
Tssr102818 11 72042461 to 72042481 20 + TSS region transcription start site region 102818
Tssr102819 11 72042492 to 72042508 16 + TSS region transcription start site region 102819
Pitpnm3 11 72047528 to 72135778 88250 - protein coding gene PITPNM family member 3
Cpgi3213 11 72050676 to 72051488 812 CpG island CpG island 3213
Gm46286 11 72051331 to 72055601 4270 + lncRNA gene predicted gene, 46286
Cpgi3214 11 72134999 to 72136440 1441 CpG island CpG island 3214
Tssr109068 11 72135737 to 72135775 38 - TSS region transcription start site region 109068
Tssr109069 11 72135805 to 72135836 31 - TSS region transcription start site region 109069
Tssr109070 11 72135988 to 72136009 21 - TSS region transcription start site region 109070
4933427D14Rik 11 72154097 to 72207470 53373 - protein coding gene RIKEN cDNA 4933427D14 gene
Tssr109071 11 72170770 to 72170787 17 - TSS region transcription start site region 109071
Tssr109072 11 72170790 to 72170819 29 - TSS region transcription start site region 109072
Gm43951 11 72203952 to 72206840 2888 - protein coding gene predicted gene, 43951
Cpgi3215 11 72206300 to 72207901 1601 CpG island CpG island 3215
Tssr109073 11 72206996 to 72207011 15 - TSS region transcription start site region 109073
Tssr109074 11 72207213 to 72207279 66 - TSS region transcription start site region 109074
Tssr109075 11 72207413 to 72207488 75 - TSS region transcription start site region 109075
Tssr102820 11 72207521 to 72207532 11 + TSS region transcription start site region 102820
Tssr102821 11 72207537 to 72207620 83 + TSS region transcription start site region 102821
Txndc17 11 72207547 to 72210015 2468 + protein coding gene thioredoxin domain containing 17
Tssr102822 11 72208267 to 72208284 17 + TSS region transcription start site region 102822
Tssr102823 11 72208732 to 72208760 28 + TSS region transcription start site region 102823
Med31 11 72211724 to 72215592 3868 - protein coding gene mediator complex subunit 31
Cpgi3216 11 72214700 to 72215865 1165 CpG island CpG island 3216
Tssr109076 11 72214985 to 72215020 35 - TSS region transcription start site region 109076
Tssr109077 11 72215026 to 72215068 42 - TSS region transcription start site region 109077
Tssr109078 11 72215087 to 72215094 7 - TSS region transcription start site region 109078
4930563E22Rik 11 72215138 to 72218450 3312 + unclassified non-coding RNA gene RIKEN cDNA 4930563E22 gene
Tssr109079 11 72215177 to 72215218 41 - TSS region transcription start site region 109079
D11Mit364 11 72232789 to 72232904 115 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 364
Slc13a5 11 72241990 to 72267056 25066 - protein coding gene solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gm34252 11 72243645 to 72247660 4015 + lncRNA gene predicted gene, 34252
Cpgi3217 11 72266107 to 72267507 1400 CpG island CpG island 3217
Tssr102824 11 72266409 to 72266423 14 + TSS region transcription start site region 102824
Tssr102825 11 72266426 to 72266454 28 + TSS region transcription start site region 102825
Tssr102826 11 72266469 to 72266479 10 + TSS region transcription start site region 102826
Tssr109080 11 72266596 to 72266611 15 - TSS region transcription start site region 109080
Tssr109081 11 72266621 to 72266640 19 - TSS region transcription start site region 109081
1700051A21Rik 11 72266844 to 72268556 1712 + lncRNA gene RIKEN cDNA 1700051A21 gene
Tssr109082 11 72267141 to 72267164 23 - TSS region transcription start site region 109082
Tssr102827 11 72267240 to 72267247 7 + TSS region transcription start site region 102827
Tssr102828 11 72267251 to 72267267 16 + TSS region transcription start site region 102828
Tssr102829 11 72267268 to 72267273 5 + TSS region transcription start site region 102829
Tssr102830 11 72267274 to 72267300 26 + TSS region transcription start site region 102830
Tssr102831 11 72267302 to 72267320 18 + TSS region transcription start site region 102831
n-R5s70 11 72281016 to 72281131 115 + rRNA gene nuclear encoded rRNA 5S 70
4930511C11Rik 11 72281224 to 72281658 434 unclassified gene RIKEN cDNA 4930511C11 gene
Tssr102832 11 72301613 to 72301671 58 + TSS region transcription start site region 102832
Xaf1 11 72301629 to 72313733 12104 + protein coding gene XIAP associated factor 1
Tssr102833 11 72305459 to 72305474 15 + TSS region transcription start site region 102833
Tssr102834 11 72305501 to 72305517 16 + TSS region transcription start site region 102834
Tssr102835 11 72306560 to 72306575 15 + TSS region transcription start site region 102835
Tssr102836 11 72308608 to 72308629 21 + TSS region transcription start site region 102836
Cpgi3218 11 72314126 to 72314772 646 CpG island CpG island 3218
Tssr102837 11 72314438 to 72314455 17 + TSS region transcription start site region 102837
Fbxo39 11 72314444 to 72319416 4972 + protein coding gene F-box protein 39
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
D11Mit219 11 72318970 to 72319101 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 219
Gm23224 11 72340370 to 72340640 270 + unclassified non-coding RNA gene predicted gene, 23224
Tekt1 11 72344722 to 72362442 17720 - protein coding gene tektin 1
Cpgi3219 11 72361727 to 72362350 623 CpG island CpG island 3219
Tssr109083 11 72361837 to 72361899 62 - TSS region transcription start site region 109083
Tssr102838 11 72361911 to 72361926 15 + TSS region transcription start site region 102838
Gm34317 11 72361928 to 72370855 8927 + lncRNA gene predicted gene, 34317
Mir6338 11 72388756 to 72388864 108 + miRNA gene microRNA 6338
Smtnl2 11 72389164 to 72411713 22549 - protein coding gene smoothelin-like 2
Tssr109084 11 72410307 to 72410320 13 - TSS region transcription start site region 109084
Cpgi3220 11 72410608 to 72412016 1408 CpG island CpG island 3220
Tssr109085 11 72411695 to 72411718 23 - TSS region transcription start site region 109085
Tssr109086 11 72411721 to 72411733 12 - TSS region transcription start site region 109086
Tssr102839 11 72435234 to 72435302 68 + TSS region transcription start site region 102839
Tssr102840 11 72435511 to 72435529 18 + TSS region transcription start site region 102840
Ggt6 11 72435526 to 72438400 2874 + protein coding gene gamma-glutamyltransferase 6
Tssr102841 11 72435536 to 72435558 22 + TSS region transcription start site region 102841
Tssr102842 11 72435565 to 72435578 13 + TSS region transcription start site region 102842
Tssr102843 11 72438651 to 72438689 38 + TSS region transcription start site region 102843
Cpgi3221 11 72440976 to 72441888 912 CpG island CpG island 3221
Tssr109087 11 72441219 to 72441276 57 - TSS region transcription start site region 109087
Tssr102844 11 72441341 to 72441386 45 + TSS region transcription start site region 102844
Mybbp1a 11 72441378 to 72451550 10172 + protein coding gene MYB binding protein (P160) 1a
Tssr102845 11 72450703 to 72450707 4 + TSS region transcription start site region 102845
Tssr102846 11 72451158 to 72451178 20 + TSS region transcription start site region 102846
Spns2 11 72451638 to 72489904 38266 - protein coding gene spinster homolog 2
Tssr109088 11 72454439 to 72454474 35 - TSS region transcription start site region 109088
Gm40194 11 72457917 to 72461817 3900 + lncRNA gene predicted gene, 40194
Tssr102847 11 72458155 to 72458171 16 + TSS region transcription start site region 102847
Tssr109089 11 72475008 to 72475032 24 - TSS region transcription start site region 109089
Tssr109090 11 72475042 to 72475070 28 - TSS region transcription start site region 109090
Cpgi3222 11 72488719 to 72490596 1877 CpG island CpG island 3222
Tssr109091 11 72489953 to 72489979 26 - TSS region transcription start site region 109091
Spns3 11 72498153 to 72550509 52356 - protein coding gene spinster homolog 3
Tssr109092 11 72502409 to 72502427 18 - TSS region transcription start site region 109092
Tssr109093 11 72502436 to 72502451 15 - TSS region transcription start site region 109093
Tssr3572 11 72540551 to 72540558 7 - TSS region transcription start site region 3572
Tssr109094 11 72550195 to 72550206 11 - TSS region transcription start site region 109094
Tssr109095 11 72550230 to 72550244 14 - TSS region transcription start site region 109095
Tssr109096 11 72550255 to 72550264 9 - TSS region transcription start site region 109096
Cpgi3223 11 72570576 to 72570850 274 CpG island CpG island 3223
Gm12712 11 72572530 to 72573330 800 - pseudogene predicted gene 12712
Cpgi3224 11 72606809 to 72608673 1864 CpG island CpG island 3224
Tssr109097 11 72607075 to 72607089 14 - TSS region transcription start site region 109097
Tssr102848 11 72607221 to 72607307 86 + TSS region transcription start site region 102848
Ube2g1 11 72607283 to 72686481 79198 + protein coding gene ubiquitin-conjugating enzyme E2G 1
Tssr102849 11 72607313 to 72607324 11 + TSS region transcription start site region 102849
Tssr102850 11 72607363 to 72607435 72 + TSS region transcription start site region 102850
Tssr109098 11 72607757 to 72607805 48 - TSS region transcription start site region 109098
Tssr109099 11 72608448 to 72608475 27 - TSS region transcription start site region 109099
Gm24143 11 72616006 to 72616150 144 - snoRNA gene predicted gene, 24143
Gm25678 11 72648925 to 72648997 72 + miRNA gene predicted gene, 25678
D11Jcs1 11 72663389 to 72663560 171 DNA segment DNA segment, Chr 11, John C. Schimenti 1
Tssr102851 11 72671205 to 72671208 3 + TSS region transcription start site region 102851
Cpgi3225 11 72689728 to 72690542 814 CpG island CpG island 3225
Tssr102852 11 72689983 to 72689994 11 + TSS region transcription start site region 102852
Tssr102853 11 72689997 to 72690015 18 + TSS region transcription start site region 102853
Ankfy1 11 72690006 to 72772146 82140 + protein coding gene ankyrin repeat and FYVE domain containing 1
Tssr102854 11 72699157 to 72699159 2 + TSS region transcription start site region 102854
Tssr102855 11 72713725 to 72713736 11 + TSS region transcription start site region 102855
Tssr102856 11 72742313 to 72742318 5 + TSS region transcription start site region 102856
Gm46287 11 72764874 to 72767506 2632 + lncRNA gene predicted gene, 46287
Cyb5d2 11 72777232 to 72795839 18607 - protein coding gene cytochrome b5 domain containing 2
Cpgi3226 11 72795244 to 72796881 1637 CpG island CpG island 3226
Tssr109100 11 72795801 to 72795847 46 - TSS region transcription start site region 109100
Tssr109101 11 72796028 to 72796074 46 - TSS region transcription start site region 109101
Tssr102857 11 72796164 to 72796246 82 + TSS region transcription start site region 102857
Zzef1 11 72796226 to 72927120 130894 + protein coding gene zinc finger, ZZ-type with EF hand domain 1
Tssr102858 11 72796257 to 72796268 11 + TSS region transcription start site region 102858
Tssr109102 11 72796757 to 72796766 9 - TSS region transcription start site region 109102
Tssr109103 11 72796946 to 72796989 43 - TSS region transcription start site region 109103
Gm22075 11 72800287 to 72800478 191 - unclassified non-coding RNA gene predicted gene, 22075
Gm6733 11 72833461 to 72835380 1919 + pseudogene predicted gene 6733
Tssr102859 11 72881791 to 72881792 1 + TSS region transcription start site region 102859
Gm26121 11 72881792 to 72881953 161 + snRNA gene predicted gene, 26121
Gm34704 11 72931334 to 72940554 9220 - lncRNA gene predicted gene, 34704
Gm34793 11 72946569 to 72948743 2174 + lncRNA gene predicted gene, 34793
Tssr102860 11 72946586 to 72946601 15 + TSS region transcription start site region 102860
Gm44467 11 72953107 to 72953196 89 + miRNA gene predicted gene, 44467
Tssr102861 11 72960288 to 72960295 7 + TSS region transcription start site region 102861
Cpgi3227 11 72960758 to 72961902 1144 CpG island CpG island 3227
Tssr102862 11 72961163 to 72961179 16 + TSS region transcription start site region 102862
Atp2a3 11 72961169 to 72993043 31874 + protein coding gene ATPase, Ca++ transporting, ubiquitous
Tssr102863 11 72961180 to 72961228 48 + TSS region transcription start site region 102863
Tssr102864 11 72991967 to 72991979 12 + TSS region transcription start site region 102864
Tssr102865 11 72992638 to 72992649 11 + TSS region transcription start site region 102865
Tssr102866 11 72992681 to 72992694 13 + TSS region transcription start site region 102866
Tssr102867 11 72997013 to 72997014 1 + TSS region transcription start site region 102867
Tssr102868 11 72999069 to 72999092 23 + TSS region transcription start site region 102868
P2rx1 11 72999103 to 73015200 16097 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 1
Tssr102869 11 72999128 to 72999137 9 + TSS region transcription start site region 102869
Tssr102870 11 73009104 to 73009117 13 + TSS region transcription start site region 102870
Tssr102871 11 73009680 to 73009691 11 + TSS region transcription start site region 102871
Tssr102872 11 73009720 to 73009737 17 + TSS region transcription start site region 102872
Tssr102873 11 73009749 to 73009798 49 + TSS region transcription start site region 102873
Tssr102874 11 73009800 to 73009820 20 + TSS region transcription start site region 102874
4732414G09Rik 11 73015856 to 73018841 2985 - lincRNA gene RIKEN cDNA 4732414G09 gene
Cpgi3228 11 73018495 to 73019895 1400 CpG island CpG island 3228
Tssr102875 11 73018986 to 73019047 61 + TSS region transcription start site region 102875
Camkk1 11 73019008 to 73042073 23065 + protein coding gene calcium/calmodulin-dependent protein kinase kinase 1, alpha
Cpgi3229 11 73047662 to 73048679 1017 CpG island CpG island 3229
Tssr102876 11 73047854 to 73047902 48 + TSS region transcription start site region 102876
Ncbp3 11 73047867 to 73083579 35712 + protein coding gene nuclear cap binding subunit 3
Tssr3573 11 73085289 to 73085297 8 + TSS region transcription start site region 3573
Tssr102877 11 73090554 to 73090603 49 + TSS region transcription start site region 102877
Itgae 11 73090583 to 73147446 56863 + protein coding gene integrin alpha E, epithelial-associated
Tssr109104 11 73094324 to 73094342 18 - TSS region transcription start site region 109104
Tssr102878 11 73111747 to 73111790 43 + TSS region transcription start site region 102878
D11Jcs2 11 73119933 to 73120165 232 DNA segment DNA segment, Chr 11, John C. Schimenti 2
Tssr102879 11 73126754 to 73126777 23 + TSS region transcription start site region 102879