Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:71748600-72158783

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr102813 11 71749914 to 71749937 23 + TSS region transcription start site region 102813
Wscd1 11 71749923 to 71789649 39726 + protein coding gene WSC domain containing 1
Cpgi3209 11 71750418 to 71751855 1437 CpG island CpG island 3209
Tssr102814 11 71750680 to 71750691 11 + TSS region transcription start site region 102814
Tssr102815 11 71750982 to 71750995 13 + TSS region transcription start site region 102815
Tssr102816 11 71750998 to 71751039 41 + TSS region transcription start site region 102816
Tssr102817 11 71751056 to 71751059 3 + TSS region transcription start site region 102817
Gm34127 11 71818078 to 71821717 3639 - lncRNA gene predicted gene, 34127
Gm22927 11 71848076 to 71848206 130 - snoRNA gene predicted gene, 22927
Gm46285 11 71891680 to 71897422 5742 + lncRNA gene predicted gene, 46285
4930401O10Rik 11 71928471 to 71940122 11651 - lincRNA gene RIKEN cDNA 4930401O10 gene
Cpgi3210 11 71953600 to 71953783 183 CpG island CpG island 3210
Gm46262 11 71963584 to 71970519 6935 - lncRNA gene predicted gene, 46262
Gm23226 11 72022755 to 72022857 102 + snRNA gene predicted gene, 23226
Aipl1 11 72027963 to 72037509 9546 - protein coding gene aryl hydrocarbon receptor-interacting protein-like 1
Cpgi3211 11 72029139 to 72029525 386 CpG island CpG island 3211
Tssr109063 11 72037452 to 72037459 7 - TSS region transcription start site region 109063
Tssr109064 11 72037474 to 72037495 21 - TSS region transcription start site region 109064
Tssr109065 11 72037503 to 72037512 9 - TSS region transcription start site region 109065
Tssr109066 11 72037513 to 72037525 12 - TSS region transcription start site region 109066
Tssr109067 11 72037551 to 72037558 7 - TSS region transcription start site region 109067
Cpgi3212 11 72041965 to 72043048 1083 CpG island CpG island 3212
Pimreg 11 72042427 to 72047372 4945 + protein coding gene PICALM interacting mitotic regulator
Tssr102818 11 72042461 to 72042481 20 + TSS region transcription start site region 102818
Tssr102819 11 72042492 to 72042508 16 + TSS region transcription start site region 102819
Pitpnm3 11 72047528 to 72135778 88250 - protein coding gene PITPNM family member 3
Cpgi3213 11 72050676 to 72051488 812 CpG island CpG island 3213
Gm46286 11 72051331 to 72055601 4270 + lncRNA gene predicted gene, 46286
Cpgi3214 11 72134999 to 72136440 1441 CpG island CpG island 3214
Tssr109068 11 72135737 to 72135775 38 - TSS region transcription start site region 109068
Tssr109069 11 72135805 to 72135836 31 - TSS region transcription start site region 109069
Tssr109070 11 72135988 to 72136009 21 - TSS region transcription start site region 109070
4933427D14Rik 11 72154097 to 72207470 53373 - protein coding gene RIKEN cDNA 4933427D14 gene